Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5770TG26.7% 311.3 / 75.1 272R661R (CGA→CGC) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base T (42/145);  new base G (8/60);  total (59/213)
Fisher's exact test for biased strand distribution p-value = 7.37e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 273 total aligned reads displayed.

CTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCT  >  DH1/2169427‑2169724
                                                                                                                                                      |                                                                                                                                                   
gtGTTCTTCTGGTACCGCATTAGCCTGGTGCTGTTCCCGCTTTCTTGCTTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCGGGTTGCTGTTCCCGTTTGCGCGCTTTGGCt                                                                                                                                                     <  5:264975/150‑1 (MQ=37)
  gTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTc                                                                                                                                                    <  5:881818/150‑1 (MQ=255)
     gttctGGGACCGCATTAGCCTGTTGCTGTTCGAGGTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCggg                                                                                                                                                 <  7:1938275/149‑1 (MQ=255)
          gggaCCTCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCaa                                                                                                                                              <  5:483292/145‑1 (MQ=255)
          ggTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCaa                                                                                                                                              <  2:1619162/148‑1 (MQ=255)
              ccGCATTAGCCTGCTGCTGGGCCAGCTTGCGTGCCTTGGCGCGGGCAATAGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCg                                                                                                                                         <  4:1682009/149‑1 (MQ=21)
               cGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCt                                                                                                                                      <  6:224003/151‑1 (MQ=255)
                gCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCtt                                                                                                                                     <  2:1231862/151‑1 (MQ=255)
                gCATTAGCCTGTTGCTGTTCCAGCTTGAGTGATTTGGCGCGTGCAATAGCAGCTTCGACGGCAGCTTTGCGCTGATCAACCTGTTCTTCTGGATAAGAATTAGCCGGTTGCTGTTCCCGGTTGGGCGATTTGGGTCGGGCAATTGCGGCtt                                                                                                                                     >  8:706450/1‑151 (MQ=14)
                 gatttcccttgtGCTGTTCCATCTTTAGTGCTTTGGCTCGTGCATTAGCTGTTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTc                                                                                                                                    <  6:1745668/140‑1 (MQ=18)
                  atgacccTGTTGCTGGTCCAGCTTGCGTGCTTGGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                                   <  1:1326711/146‑1 (MQ=255)
                  actAGCCTGGTGCTGTGCCTGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                                   <  2:1078542/149‑1 (MQ=255)
                  aTTAGCCTGGTGCTGTTCCAGCTTGCGTGCGTGCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                                   <  3:1143966/151‑1 (MQ=255)
                    tAGCCTGTTGCTGTTCGAGCTTGCTTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGa                                                                                                                                  <  3:698874/150‑1 (MQ=255)
                      gCCTGGTGCTGGTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcgg                                                                                                                               <  7:1493844/151‑1 (MQ=255)
                       ccTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTTTGCGAGCAGCGAAGTGGTCAGGTGGCTCCGCAATTGACGGTACGAGATCCCGTTTGCGGGCTTAGGCTCGTGCAATAGCGGCTTCGCcggg                                                                                                                              >  3:1685351/1‑150 (MQ=9)
                             gctcggcgcgCTTGCGGGCCTGCGCGCGGGCAATAGCCGCGGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCtt                                                                                                                         <  1:1050633/141‑1 (MQ=14)
                              gcggtCCAGCTTGCGGGCGTGGGCGCGGGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg                                                                                                                       <  2:1143734/147‑1 (MQ=17)
                                gTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc                                                                                                                      <  3:1607918/150‑1 (MQ=255)
                                gTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                                                                                     <  3:280272/151‑1 (MQ=255)
                                gTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                                                                                     <  7:808008/151‑1 (MQ=255)
                                 gtCCAGCGGGCGGGCGTTGGCGCGTGCAATAGCCGCGGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc                                                                                                                    <  1:1433666/150‑1 (MQ=17)
                                  tCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc                                                                                                                    <  1:1001714/150‑1 (MQ=255)
                                   ccAGCTTTCGTGCGTTCGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCgg                                                                                                                  <  7:594142/151‑1 (MQ=255)
                                    cAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                                                                                                                 <  5:1755059/151‑1 (MQ=255)
                                     cgCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                <  7:1083805/150‑1 (MQ=255)
                                     cgCTTGCGGGCTTTCGCGCGTGCAATAGCCGCTGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                <  4:909440/150‑1 (MQ=255)
                                      gCTTGTTTGCTTTCGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                               <  2:462061/151‑1 (MQ=255)
                                      gCTTGCGGGCTTTGGCGCGGGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                               <  6:484300/151‑1 (MQ=255)
                                       gttttttGCTTTTGCGCGTGCATTAGCCGGTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                               <  8:1289833/144‑1 (MQ=17)
                                         ttcttgcgtgcgcgcGGGCAATAGCCGCGTCAACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGa                                                                                                             <  5:1609744/139‑1 (MQ=17)
                                          gcggccttgtgctagTGCATTAGCGGCTGAGTCGTCCGCTTCGGGCCTATCCACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc                                                                                                            <  5:802381/136‑1 (MQ=1)
                                          gCGTGCTTTGGCGCGGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc                                                                                                            <  7:670669/150‑1 (MQ=255)
                                           cGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGAAGATATGTACAGCCTCCTCATTAGAATGATGCTGTTCCCCTTTGGGGGATTTGGCTCGGGCAATATCGGATTAGAAGGCGGCTTTGCGCGGATCGAcgt                                                                                                          >  4:1784284/1‑149 (MQ=9)
                                            tggccttcgcgcTTGCAATAGCCGCGTCTACGGCCGCTTTGCGCTGATCTACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCTGGCGTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                                          <  6:1134949/142‑1 (MQ=14)
                                            gTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCTCATAAAACAGTTCTTCTGGCTAAGCATTAGCAGGTTGCTGTTCCAGATTGAGCGCTTTGGCTCGGGAAATAAAAGCTTCGACGGCGGCTTTgagctcgtcggcggg                                                                                                         >  8:259243/1‑140 (MQ=255)
                                            gTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtg                                                                                                         >  7:81991/1‑151 (MQ=255)
                                              gcgttGGCGCGTGCAATAGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATGAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                       <  3:59884/148‑1 (MQ=255)
                                              gcctgcgcgcGTGCAATAGCCGCGTGCACTTCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCGCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                       <  4:723574/145‑1 (MQ=14)
                                              gCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                       <  7:1025462/151‑1 (MQ=255)
                                                  tGGCGCGTGCAATAGCCGCTTCGACGGCAGGTTTGCGCGGATCACCCTGTTGTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGCTTGCGCGCTTTGGCGCGGGCCATAGCGGCTTCCACGGCGGGTTTGCGGGGATCCAccaggggtgg                                                                                                   >  1:29207/1‑143 (MQ=17)
                                                    gcgcGGGCTATAGCCGCTTCTACGGCAGCTTTGCGCGGAGCTACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCGCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                  <  6:1041191/150‑1 (MQ=14)
                                                    gcgcGGGCAATAGCCGCGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGATAACGCATTAGCCTCTTGGTGTTAAAGATTGAGTGCTTATGAGCATGAAATAGCGGGTTCGACGGCAGAAATTCAAGAATCGACCTGTTGTtgtg                                                                                                 >  2:803808/1‑151 (MQ=16)
                                                     cgcgTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTGTTCTGGATCGGGGTTGGCCGGTGGGGGGTCCGCCAGGCGCGGTGTGCCAGGGGGTATGGCGGCTTCGCCTGCGTATTTGCGCGGCTCggggtggtgtggtgg                                                                                                >  1:513560/1‑137 (MQ=2)
                                                     cgcgGGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTgg                                                                                                <  1:1122370/151‑1 (MQ=255)
                                                        gTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTc                                                                                             <  4:1566692/151‑1 (MQ=255)
                                                         ggCAATAGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCg                                                                                            <  3:1794621/150‑1 (MQ=255)
                                                          gCACTAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCg                                                                                            <  4:303776/150‑1 (MQ=255)
                                                          gCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg                                                                                           <  7:1124743/151‑1 (MQ=255)
                                                          gCAATAGCCGCTGCTACTGCAGCTTTGCGAGGATCAACCTTTGCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGGGCTTTTGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg                                                                                           <  2:895515/151‑1 (MQ=14)
                                                           cAATACCCGCCTCCACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGc                                                                                          <  1:757519/151‑1 (MQ=255)
                                                             aTAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAt                                                                                        <  7:1384063/151‑1 (MQ=255)
                                                               agccgcggcttctgCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTCGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa                                                                                      <  6:584127/138‑1 (MQ=14)
                                                               aGCCGCGGCCACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa                                                                                      <  1:1168708/151‑1 (MQ=255)
                                                                gCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCGGTTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAg                                                                                     <  4:460608/151‑1 (MQ=255)
                                                                    ggtctactgCAGCGTTGCGCGGATCAACGTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCCGGTTTGCTCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTg                                                                                 <  5:333860/143‑1 (MQ=14)
                                                                    cgtctactgCAGCTTTGCTCGGATCAACGTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCCGTTTGCTCGCTTTTGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTg                                                                                 <  6:409930/143‑1 (MQ=14)
                                                                       cGACGGCAGCTTTGCGCTGATCAACGTGTGCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCGCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGtt                                                                               <  5:121861/150‑1 (MQ=17)
                                                                         acgggcgCTTTTCTCTGATGAACTTGTTGTTGTTGTTCCGATTTATCCTGGTGCTGGTCCGGTTTTCTGGCTTGTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCt                                                                            <  8:327209/145‑1 (MQ=2)
                                                                            gCAGCTTTGCGCGGATCAACCTGTGCTTCTGGCTCCGCATTAGCCGGGTGCTGTCCCCGTTTGCGCGCTTTGGCTCGTGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGtt                                                                         <  1:365758/151‑1 (MQ=255)
                                                                              aGCTTTGCGTTGATCTCTTTGTTCTTCTTGCTCGTGATTAGCCTGGTGCTGTTCGGGTTTTCTGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTcc                                                                       <  4:403850/151‑1 (MQ=2)
                                                                               gCTTTGCTCGGATCAACCTGTTCTTCTGGCTCCGCAATACCCTGGTGCTGTTCCCGTTTGCGCGCGTTGGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTcc                                                                       <  1:65067/150‑1 (MQ=14)
                                                                               gCTTTGCGCTGATCAACCTGTTCTTCTGGCTCCTCTTTAGCCGGTTGCTGTTCCCGTTTTCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                      <  3:254413/151‑1 (MQ=14)
                                                                                   tGCGCGGATCAACCTCTTCTTCTGTCTCCGGATTAGCCTGTTGCTGTTCCTGTTTTCTGGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCt                                                                   <  2:626972/150‑1 (MQ=14)
                                                                                    ccggtgATCTACCTCGTCTTATGGCTCCGCATTACCCTTGTGCTGTTCGCGTTTTCGGGCCTGCGCGCGGGCAATAGCGGCTGCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt                                                                  <  8:1149508/145‑1 (MQ=9)
                                                                                       cgGATCAACCTGTTCTTCTGGCTCGGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGt                                                              <  8:1720051/151‑1 (MQ=255)
                                                                                            ccaCCTGCTCTTCGGCCTCCGCATTAGCCTGCTGCTGTGCCCGTTTGCGCGCTTGCGCGCGGGCAATAGCGGCTGCCACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCttt                                                         <  2:319925/149‑1 (MQ=14)
                                                                                                  gTTCTTCTGGGACCGCATTAGCCTGGTGCTGTTCGCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACg                                                   <  1:1849620/151‑1 (MQ=14)
                                                                                                  gTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGCTTGCGCGCATAGGAACCGCCAAGAGCTGAAACGCAGGCCGCTTGGCCCGGATCGAACTCGTGGTCGGGCTCGGAATAAGACTGTTGCTGTTCCAGCTTGCgggggtgggccgg                                                   >  1:1503120/1‑139 (MQ=2)
                                                                                                   ttcttcTGGCTCCGCATTAGCCTATATCTGTTCACCTTAGAGAGCTTTGGCACGGTCAATAGCGGATTAGAAGGCGGCTTTGCGCGGATCGAAATGTTATTATGGATCGGCATTAGCCTGTAGCTGTTGCGGGTGGCGTGCGTTGGGACgg                                                  >  8:53655/1‑151 (MQ=2)
                                                                                                       tctGGCTCCGCAAGAGCCTGCTGCTGGTCCCGTTTGCTGGCGTGCGCGCGGGCAATAGCCGCTTCCACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACggg                                                 <  1:853052/148‑1 (MQ=14)
                                                                                                        ctGGATCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGATCGTAATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAAt                                             >  8:107135/1‑151 (MQ=255)
                                                                                                         ggcgtgcccaggaGCCGGGTGCGGATCCCGTTTGCGGGCCTGCGCGCGGGCAATAGCCGCGTCGACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa                                            <  7:309605/139‑1 (MQ=14)
                                                                                                           ggtcgttaTTAGCCTTTTGCTGTTCGGGTTTGTTGGCTTGTGCGCGGGCAATAGCGGCGTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGGTTGCGTGCTTTGGCACGGGCAATAGc                                          <  4:1122857/144‑1 (MQ=14)
                                                                                                            gtCCGGATGAGCCTGGTGCTGTTCGCGTTTGCGCGCGTTCGCTCGGGCAATAGCGGCGTCCACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg                                         <  3:925435/150‑1 (MQ=14)
                                                                                                            cTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTc                                                                                                                                    >  2:1875164/1‑60 (MQ=255)
                                                                                                             tCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                                          >  6:868810/1‑85 (MQ=255)
                                                                                                              cttcactAGCCGGATGCTGTTCCGGTTTTCTGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg                                         <  6:1407707/143‑1 (MQ=14)
                                                                                                                gCATTATCGGGTGGATCTGCCCGCTTGCGCGCTTTCTCTAGGGGAATCGAGGGGTGGCCGGGGGGCTTGCGCTGATCGACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt                                     <  5:1238856/151‑1 (MQ=9)
                                                                                                                gCATGAGCCTGTTGCTGGGCGCGTTTGCTCGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt                                     <  1:1311893/151‑1 (MQ=14)
                                                                                                                 cATGAGCCTGGTGCTGTTCCCGTTTGCTCGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                    <  5:980511/151‑1 (MQ=14)
                                                                                                                      gCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTACGAGGATCAACAAGTTGTTCTGGTTCCTCATTAGACAGTTACAGATCCATCTAGCGAGATATGGAACTGGCAATAgaagctaaaacgg                               >  8:1013931/1‑139 (MQ=255)
                                                                                                                       gctggtGCTGTTCCAGGGTGCGCGCTTTGGCTCATTCAATATCGGGTTCGCCGGCGGGCTCTCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                              <  1:144707/146‑1 (MQ=11)
                                                                                                                        gtggtGCTGTTCCGGTTTGAGGGCTTGTGCTCGGGCAATAGCGGCGTCTACTGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGATCGGCTTTAGCGTGTTGCTGTTCCAGCTTGCGTGGTTTGGCACGGGCAATAGCGGCTTCGTcggcg                             <  6:1303060/147‑1 (MQ=14)
                                                                                                                          gctGCTGTTCGGCTTTGCGGGCTTGGGCGCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc                           <  3:193017/149‑1 (MQ=14)
                                                                                                                          gctGCTGTTCGCGTTTGCGCGCTTTCGCGCGGGCAATAGCGGCGTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggcgg                            <  5:536140/148‑1 (MQ=14)
                                                                                                                            tGCTGGTCCCGGTAGCGCGGTGTGGCTCGGTCAATAGCTGCTTCCACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCt                          <  1:1657137/150‑1 (MQ=14)
                                                                                                                             gCTGTTCGGGTTTTCTCGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGTTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                        <  4:529482/151‑1 (MQ=14)
                                                                                                                             gCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCtt                                                                  <  6:722138/109‑1 (MQ=12)
                                                                                                                             gCTGTTCCAGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGAGCGACCTGGTGTTCTGGCTCGGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt                        <  7:714262/151‑1 (MQ=14)
                                                                                                                               tGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTACATCGCCAGCGCCTGTGCGCGGATAGACCTGTTTTTCTGGGTCGGCATTAGCCTGTTGCTCTTAAAACTTTAAAGATTTGGCGCGGGCGATAGCGGGTTcggcggcgggtgggg                      >  4:880331/1‑145 (MQ=255)
                                                                                                                                 ttCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGGTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTgcgg                    >  5:1858048/1‑150 (MQ=255)
                                                                                                                                    gtgTTTTCGGGCTTTCGCTCGGGCAATAGCGGATTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                 <  7:922912/149‑1 (MQ=14)
                                                                                                                                     cGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGGTCGGCATTAGCCTGTTGCTGAGCGCGGTTGCGGGCAGTGGGGCGCTCCAGAGCGGGTGAGACGGCGGGTTTGCggggtt                >  5:1060082/1‑149 (MQ=2)
                                                                                                                                      gattGCGCGCGTTGGCGCGGGCAATAGCGGCGGCCACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATc               <  3:1263840/149‑1 (MQ=14)
                                                                                                                                      gTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACATGTTGTTCTGGGTCGGCATTATCCTGTTGCTGTTCCAGATTCCGTGCTTTGGCGCGGGCGATAGCTGCTTCGACGGAAGCTTTTCGAGGAt                >  8:85658/1‑150 (MQ=11)
                                                                                                                                       tttGCGCGCTTTGGCTCGGGCAATAGCCGCTTCGCCGGCGGCTTTGCGCGCATCCACCTTTTGTTCTGGCTCGGCATTAGCGTGTTGATGTTCCAGCTTGCGGGCTTTGGCGCGGGCACTGGCGGGTTGGGcggcgggggggcggggcgcg              >  7:348453/1‑137 (MQ=255)
                                                                                                                                             cgcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTggt                                                                                               <  5:1832696/64‑2 (MQ=17)
                                                                                                                                                   ggCTCGTGCAATAGCGGCTGCGCCCCCAGCAGTGCGCGGATCGTGCGGGTCGTGTCGAGGGGCACTCTCCGGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTtcttct  <  5:595682/151‑1 (MQ=2)
                                                                                                                                                   ggCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGGTCGGCATTAGCCTGTTGCTGTTACAGCTGGCGAGCTGTGGACAGGGCTATAGCGGCTTCCACGGCTGTTTTACGCGGATctcacacttattct  >  3:991626/1‑138 (MQ=11)
                                                                                                                                                      |                                                                                                                                                   
CTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCT  >  DH1/2169427‑2169724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑