| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 2,169,720 | 0 | C | G | 23.5% | 159.6 / 28.0 | 142 | E614Q (GAA→CAA) | rsxC | electron transporter RsxC |
| Reads supporting (aligned to +/- strand): ref base C (73/31); new base G (28/4); total (105/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.41e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 145 total aligned reads displayed.
GGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGC > DH1/2169574‑2169870 | ggCTCGTGCAATAGCGGCTGCGCCCCCAGCAGTGCGCGGATCGTGCGGGTCGTGTCGAGGGGCACTCTCCGGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTtcttct < 5:595682/151‑1 (MQ=2) tcAATATCGGCTTCGTCGTCCGCTTTGAGCTGATCTACCTTTTCTTCTGTCTCCGTATTCGACGGTTTCTGTACCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTCTTCTGGTTcc < 2:1314589/149‑1 (MQ=2) ccacgcgcgcCTCCGACCGCCGCTTCGCGCGGATCCACCTGTTGTTATGGCTCCGCATTAGCCTGTTGCTGTTCCATCTTTCTTTCTTTCGCTCGGTCAATAGCGGCTGCGAGGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCg < 3:604343/145‑1 (MQ=11) tAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGACCTCGTGTGCTGGTTCCGCAtt > 7:425533/1‑151 (MQ=11) gCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGGTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCACGGGCTATAGCGGCTTCCAAGGCAGATTTCCGGGGATCCCCCTGGTGTTCTGCTTCCTCAtt > 1:354265/1‑149 (MQ=11) cggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCAGGTTTCCGAGGATCCGCATCTTGTGCTGCTTCGGAATTAGCCTGATGATGtgc > 5:1703840/1‑149 (MQ=11) ggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCCATACCCTCTTAGCAGCCGGCTTTGCCCGTAGAGACCGCTTCTTAAGGTTCCTAATTAGCCTGTTGCTGtta > 3:920332/1‑149 (MQ=9) ggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCCATAGCTGCTTCGACGGCAGGTTTGCGGGGATCCACAAGGTGTGCTGGTTCGTGAGTAGGCTGTTGGTGTTcc > 7:872064/1‑151 (MQ=11) gcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCCATAGCTGCTTCGACGGCGGGTTTGCGAGGATCGGCCAGGTTTGCTGGTTCCGAAGTATCCTggagttcttcc > 5:1426045/1‑140 (MQ=11) cgacgcgcGGACCGACCTGTGCTCCGCCCACCGCATTAGCCTGTTGCTGGTCCAGCTTTCGTGCTTTGGCACGTGCAATACCGGCTTCGACGCATGCTTTGCGAGGATCGACCTGTTCTTCTGGTTCCTCATTAGCCTGTTGCTGTTCCAg < 1:1478113/147‑1 (MQ=2) ttcgcgtatctttcTGTTCTTGTGGCTCTTCATTTGTCTTTTGCTGTTCGTGTTTGTTGGCTTGTGCGCGGGCAATAGCCGCGTCTACGGCGGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCt < 2:1835812/137‑1 (MQ=2) gcgcGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGATTTGCGTGGATCCCCCAGTTGTTCTGCTTCCGAATTATCCTGTTGCTCTTCCAGATTg > 3:283299/1‑151 (MQ=11) acgcgGAGCGACGTGCTTTTCTGGCTCGGGATGAGCCTGCTGCTGTGCGCGTTTGCTTGCCTTAGCTCGGGCAATAGCCGCTTCAACTGCCGCTTTGCGCGGATCCACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTg < 5:1311865/150‑1 (MQ=9) gctgctCGAGCTGTTATTCTGACTGGGGTTTAGCCGGGTGCTGTTCCCCTGTTCTGGCCTTAGCGCGGGCAATAGCGGCGGCGACTGCGGCTTTGCGCGGATCCACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTgcg < 1:1354041/146‑1 (MQ=2) cgtaTCCACTTGTTCTTCTGGCTCGGCATTATCCTTTTGCTGTTCGTGTTTTCTTGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTgcg < 8:76711/147‑1 (MQ=11) ggATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTAGCGCGGATCGCCCTGGTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTgcgcg > 7:104618/1‑151 (MQ=255) gACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGATTTGCGGGGATCTCCCTGTTGTGCTGGTTCCGCATTAGCCTGATGGTCTTCCAGCTTCCGCGAtttt > 5:1771949/1‑150 (MQ=11) ataggttttCTGCCTCGTCATTATCCTGCTGCTGGTCGGGTTTTTTGGCGTGTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGc < 4:1484701/144‑1 (MQ=2) tgttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGTTTTGCGAGGATCAACAAGGTGTTCTGCTTCCTAATTTTCCTGTTGTTCTTCCAGATTCCGATCTTTAGCGCggc > 2:1463896/1‑150 (MQ=2) gttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGc > 3:307243/1‑151 (MQ=37) ttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCGATAGCTGCTTCGACGGCGGGTTTGCGGGGATCGCCCAGGGTTGCTGGTTCGGTAGTTTCCTGATGGTGTTCCTGGTTccgcggatttgcgccgcgc > 3:735123/1‑137 (MQ=2) tGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGATTTACGGGGATCAGCATCGTGTTCTGCTTCCGAATTATCCTGTAGGTGTTCCAGGTTCCGAGAtttttccccgtaaatt > 4:781054/1‑138 (MQ=2) tCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTGCTGGTTCCGCATTAGGCTGTTGGTGTTCCAGCTTGCGCGCTTTGGCCCGGGGAAGAGctg > 7:1028267/1‑149 (MQ=11) cgcccttAGCCTGTTGCTGTTCCAGTTTTATTTCTTTTTCTCGGTCAATAGAGTGTTAGACGGCCGATTTGCGCGTATCGATCTTTTCTTCTGTTTCGTTATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGc < 8:12443/146‑1 (MQ=2) cGGCATTAGCCGGTTTCTGTTCCAGGGTGCTTGCGTTGGCAGTGGACACATGTGCTGAGACGTCGTCTTTGCGCGGATCGACCTGTTCTTCTGGGTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCgg < 7:1699041/150‑1 (MQ=14) cgaGCCGGGTGCTGTTCCAGCTTGCGGGCTTCGGCACGGGCAATAGCGGCTTCGCCGGCGGCTTCGCTCGGATCGACCTGCGCTGCTGGGTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGa < 7:28271/149‑1 (MQ=14) tAGCCTGGTGATGATCCTGTTTGCGTGCTTGCGGATGTTCATTTGTGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGa < 8:892547/150‑1 (MQ=14) tAGACTGGTGATGTTCCTGTTTGCGTTCTTGTGGATGTTCATTTGTGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGa < 8:136174/150‑1 (MQ=14) aaGCCTCTTGCTGTTACTTCATGCTTTCTTTCGACCTGGCTATAGCGTCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGa < 8:1685320/149‑1 (MQ=14) ccgcTGTTGCTGTTCCAGGTTTTGTTCTTATGCTCTGGCAATAGAGGCTTCGACTGCCTCTTTTAGAGTATCTATCTGTTCATCTGGCTCTTCATATGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAcg < 6:894338/148‑1 (MQ=2) aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCTGCTTCCACGGCGGGTTTGCGGGGATCCCCCTGTGGTTCTGCGACCGCAATAGCCTCTTGCTGTTCCCCCGTGCGCGCGATGGCTCGCGCCATAGCGGCTTCGAcg > 7:1929352/1‑151 (MQ=2) gCCTGTTGCTGTTTTATATTGATTGCTTTCGCACGGTCATTTGCGGCGTCGAAGTCTGTTTTGCGCTGATCGACGTTTTTTTGTTGTTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAcgg < 6:1360494/151‑1 (MQ=9) gCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCTAcgg > 1:660335/1‑151 (MQ=16) ccTCTTGCTTTTTCATTTTGCTCGCTTTGCCTCGGTCAATACCCGCTTCGACGCCCGCTTTGCGCGCAGCGACGTGTTGCTGTTCCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 4:598763/151‑1 (MQ=9) tGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTGCGAGGATCGGCATGTTGTTCTGGTTGCGCATTAGCCGGTTGCTGTTCAAGCTTGCGAGCGTTGGCTCGGGCAATAGCTGCTTCGAcggcatatt > 1:1852553/1‑146 (MQ=14) tGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGACCTCTTCTGCTGGGTCCTCTGAAGTCGGTTGCGGTTCCCGCTTGCGCGCTTTCGCCCGGGCCATAGCTGCTTCGAcggcggggt > 5:1554272/1‑148 (MQ=11) tGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGTCCCGGGCAATAGCTGCTTCGAcggcaggtt > 5:244889/1‑146 (MQ=11) tGCTGTTCCAGCATGCGGGCTTTGGCTCGGGCAATAGCTGATTCGAAGGCGGCTTTGGGCGGATCCTCCTGTTCTGCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCt < 7:52333/150‑1 (MQ=11) cTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGCTTCCGCATTAGCCTGTTGCTCTTCCAGCTTGCGCGATTTGGCACGGGCAATAGCTGCTTCAACGGCAGAttt > 2:1626194/1‑150 (MQ=11) cTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGGTTTGGCCCGGGAAATAGCTGCTTCGACGGCAGGTTTGCGGGGATCg > 8:1032045/1‑151 (MQ=11) cTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTAGATCGGATGAGCCTCTTCTTCTGTTTCAGGATTATCCAGTTTCTTTTGCAGCTTGCTCGCGTTTTCACTTAAAATAGCGGCTTCGAGggcggcgt > 8:343354/1‑138 (MQ=9) cGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTGCTGGTTCCTCATTAGCCTGTTGGTCTTCCAGATTCCGGGATTTTGCACGGTAAATAGCTTCTTCGCCGGCAGGTTTTCGAGTATcatccg > 4:211545/1‑146 (MQ=2) gCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGACCTGTGGTGCTGGTTCCGGATTTGCCTGTTGGTGTGCCAGCTTGCGCGCTTTGGCGCGGGCCCTCGCTGCGGCGCCGGCGGGTTTGCGCGGCTCGGccgggg > 8:34114/1‑147 (MQ=2) aatGGCACGGGCCATCCCCCCTGCGCCCGCCGCATCGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttct < 3:1468941/149‑3 (MQ=11) tGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTgttgtt < 4:961068/150‑1 (MQ=255) tGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTGCGCGGATCGACCTgttgttg > 4:943444/1‑150 (MQ=255) tGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCAACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTc > 5:1849111/1‑151 (MQ=255) ggCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTc < 7:107290/150‑1 (MQ=255) gCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCCTCCTGGGGTTCTg > 5:1504303/1‑151 (MQ=11) cccctcgcacacgCGGCTCCGACCTCTGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCGGTTGCTGTTCCAGCTTGCTCTCTTTGGCACTGGCAATAGCTGCTTCGACGTCTGCTTTGCGCGGATCGACCTGTTGTTCTg < 8:1707779/139‑1 (MQ=14) cgcgtgCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGAGTGCGGCCGATGACACGGCGGATATCGGCTGAGAGGCAGGCATTGCGGGGGTCGTCGTGTTGTtgtgt > 5:412237/6‑150 (MQ=2) gCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCTGGTTTGCGCGGATCGACCTGGGGTTCTGGGTcgg > 3:584466/1‑149 (MQ=14) cAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCTGCTTCGCCGGCCGGTTTTCGAGGATCCGCCTGTGGTGCTGCTTcgg > 1:1120983/1‑148 (MQ=11) aaTAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGATTTGGCACGGGAAATAGCTGCTTCTACGGCAGATTTTCGAGGATCAACCTGGGGTTCTgcgtcgtt > 6:459694/1‑143 (MQ=11) aTAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAAGAGCTGCTTCTACGGCCGGTTTGCGCGGATCATCCAGGGGTTCTGCTTCCGGAt > 7:1202368/1‑151 (MQ=11) aTAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGTTTTTCGAGGATCAGCCTGGGGTTCTgcgtcgggat > 2:804326/1‑142 (MQ=11) aTAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGGCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCTATAGCGGCTTCGACGGCGGGTTTTCGCGGCTCGAGCtgtcgtcgggcgtccgc > 1:1900692/1‑138 (MQ=14) aTAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTTCGAGGATCGACCTGTGGTTCTGCTTCGGCAt > 7:62735/1‑151 (MQ=14) aTAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGATTTGCGAGGATCGACCTCTTGTTCTgcgtcctaat > 6:242753/1‑142 (MQ=14) aTAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGCTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCTGCTTCTACGGCAGATTTGCGCGGATCAACCTCGTGTTCTGCTTCCTCa > 3:1531593/1‑150 (MQ=11) aGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGAATTAGCCTGTTGATGTTCCAGATTGCGCGCTTTGGACCGGGCAATAGCGGCTTCTACGGCAGATTTTCGAGGATCACCATATTTTTCTGGTTCCgaagtt > 8:898977/1‑146 (MQ=11) cGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGACCTGTGGTTCTGGTTCGGCATTatc > 7:217185/1‑149 (MQ=255) gccgcGACGGCGGCCGTGCGCGGATCCCCCCGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCGTCGACGTCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCt < 7:53721/147‑1 (MQ=11) cTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGGTGTTCTGGTTCCGGATTAGCCTg > 7:973666/1‑151 (MQ=255) ttCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCGGCTTCGACGGCGGGTTTGCGGGGATCCGCATCTTTTTCTGGTTCCGCAGTATGCTGt > 5:1474214/1‑151 (MQ=14) gcagACGGCGGCTTAGGGCGGATCGGACTGTGAGTCGGGTTCAGCAGTGGGCTGTTGCGCTCCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGt < 1:1454521/148‑1 (MQ=11) tCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACCTGTGGTTCTGGTTCGGCATTAGCCTGtt > 4:639332/1‑151 (MQ=255) gACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCCATAGCGGCTTCCACGGCGGCTTTGCGCGGATCGCCATGGGGTTCTGGTTCCGCATTATGCTGTTgg > 5:104712/1‑150 (MQ=14) gACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCAGGTTTGCGAGGATCAGCATGTTTTTCTGGTTCGGAATTTTCCTGATgt > 2:1422534/1‑150 (MQ=11) aCGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCTGCTTTGCGAGGATCCACCTCTTGTTCTGCTTCCGAATTATCCTGt > 8:1825404/1‑147 (MQ=14) cggcggCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGCCCTGTTGTGCTGGTTCCGCATTATCCTGTTGCTg > 7:1444301/1‑151 (MQ=255) cggcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTGCCTCTTGTTCTGGTTCCTCATTAGCCTGTTGGTGTTc > 2:1258735/1‑151 (MQ=14) ggcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCTGCTTCGACGGCGGCTTTGCGGGGATCGCCCTGTGTTTCTGCTTCCGCATTATCCTGTTGCTCTTcc > 4:917501/1‑151 (MQ=14) ggcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATCGCCCTGTTGTTCTGGTTCCGCATTATCCTGTTGGTGTTcc > 7:1632895/1‑151 (MQ=14) ggcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCCCCCTGGTGTTCTGGGTCCGAATTAGCCTGTTGCTGTTcc > 7:849098/1‑151 (MQ=14) ggcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCCACGGCAGCTTTACGAGGATCGCCAACTTGTTCTGCTTCCTAATTATCCTGATGATCTTcc > 4:255459/1‑151 (MQ=14) gcTTTGCGCGGATCGACCTGGGCGTCTGGTTCCGCCTTAGGCTGTGGCTGTTCCAGCTTGCGCGCGTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCa < 1:1301799/151‑1 (MQ=14) cTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGACCTCTTGTGCTGGTTCCTGATTAGGCTGTTGCTGTTcc > 7:1195398/1‑149 (MQ=14) cTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGATTTGCGCGGATCGCCCTCTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTcc > 7:320322/1‑149 (MQ=255) tttGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGc < 2:1128420/69‑1 (MQ=21) tttGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATCGACCTGGTGTTCTGCTTCGGGATTTTGCTGTTGGTCTTcctgg > 1:813046/1‑148 (MQ=14) tttGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 3:42002/93‑1 (MQ=255) tGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCTACGGCAGATTTTCGAGGATCGCCATGTTTTTCTGGTTCGTCATTATCCTGGTGGTGTTCCAGCtt > 2:1813382/1‑151 (MQ=14) cgGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCTCCATGTTGTTCTGGTTCCTGATTAGCCTGTTGATGTTCCAGCTTgcgc > 4:965115/1‑151 (MQ=14) cgGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGAAATAGCTGCTTCGACGGCAGCTTTACGAGGATCAGCCACTGTTGCTGCTTCCGGATTATCCTGAAGGTCTTCCAGATTgcgc > 6:1435996/1‑151 (MQ=2) aTCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCCATAGCTGCTTCGACGGCGGCTTTGCGGGGATCGCCCAGGTGTTCTGGGTCCGGATTAGCCTGGTGCTGTTCCAGCTTgcgcgcg > 6:1192853/1‑150 (MQ=14) aTCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCCCCCTGGTGTTCTGGTTCCTCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCt > 7:183260/1‑151 (MQ=255) cGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCAGATTTACGAGGATCACCAACTTTTTCTGCTTCCGAATTATCCTGTAGATCTTCCAGCTTgccagatgt > 4:1016563/1‑144 (MQ=2) cGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTAGATCGAAAGAGCCTGTGCTAGGGTAAACCTGTAGTTCGGGTTCGTCATTTGCGTGTTGCTGTTAGAGATTgcaaacttt > 2:1320276/1‑144 (MQ=9) cGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCCACGGCTGCTTTGCGAGGATCCCCATCTTGTTCTGGTTCCGCAGTATCCTGTTGATGTTCCAGCTTGCGAGGttt > 1:380862/1‑151 (MQ=14) gACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGCCCTGTGGTGCTGGTTCCGGATTATGCTGTTGGTCTTCCAGCTTgcgcggtgtt > 2:730639/1‑146 (MQ=14) gACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTCTTGTTCTGGTTCCGCATTATCCTGTTGATGTTCCAGCTTGCGAGCTTTg > 7:453421/1‑151 (MQ=255) gACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCAGGTTTCCGCGGATCGACCTGTTTTTCTGGTTCGGGATTATGCTGATGGTGTTCCAGATTccggcatttg > 7:1224442/1‑144 (MQ=14) ccTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGAGGATCGACAAGTTGTTCTGGTTCCGCATTAGCCTGTTGCTCTTCCAGCTTGCGCCCTTTgtc > 1:1808256/1‑149 (MQ=14) ccTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCAACGGCAGATTTACGAGGATCAACAACTTTTTCTGCTTCCTAATTATCCTGAAGATCTTCCAGAttcccacgttaga > 4:1335475/1‑139 (MQ=2) cTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCAACGGCGGATTTGCGAGGATCAACAACTTGTTCTGGTTCCGAATTAGCCTGTTGCTGTTCAAGAttcccagtttcttgg > 4:16316/1‑138 (MQ=14) cTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTCTTGTGCTGGTTCCGGATTATCCTGTTGATGTTCCAGATTgcgaggttattcg > 8:390370/1‑141 (MQ=14) cTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGGTTGCGCGCTTTg > 5:92876/1‑52 (MQ=11) tGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCCCCCTGGTGTTCTGGTTCCGGATTAGCCTGTTGCTGTTCCAGATTGCGCGCTTTGgcgc > 1:1629761/1‑151 (MQ=255) cttctGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTGTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCgggg > 1:349921/1‑150 (MQ=255) | GGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGC > DH1/2169574‑2169870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |