Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,6730AT24.1% 148.3 / 32.9 168R629R (CGT→CGA) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base A (52/58);  new base T (3/32);  total (69/99)
Fisher's exact test for biased strand distribution p-value = 1.84e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 171 total aligned reads displayed.

TGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAAT‑AGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGG  >  DH1/2169524‑2169822
                                                                                                                                                       |                                                                                                                                                       
cgctctgcgggCCCCGCATTAGCCGGTTGCTTTTCCCGTTCGCGCGCTTTGGCTCGGGCTAC‑TGCGGCTTCTCCGGAGGGTTTCCGCGGCGCGACCTGATGTTCTGGGTCCGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCAc                                                                                                                                                        <  5:829742/142‑1 (MQ=14)
 ggtgttctGCCTCCTCTTTACCCTGGTGCTGTGCGCGTTTGCTGGCGTTCGCTCGGGCAAT‑AGCCGCTTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCa                                                                                                                                                         <  1:544572/145‑1 (MQ=14)
 gTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTGCCCGTTTGCGCGCTTTGGCTCGGGCAAT‑AGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACg                                                                                                                                                       <  7:97759/151‑1 (MQ=255)
 cttcttcTGGCTCCGCATTAGCCGTTTGCGTTCCCCCCGTGCGTGCGTTCGCGCGGGCAAT‑AGCCGCTTCCACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCa                                                                                                                                                         <  6:1814781/148‑1 (MQ=14)
     ttagggctcggtttgaGCCTGTTGCTGGGCCGGTTTGGTGGCGGTGGCGCGGGCAAT‑AGCGGCGTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGc                                                                                                                                                    <  4:809466/135‑1 (MQ=11)
      tctGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAAT‑ACGGTCTTAGCCGGCCCCGTATCGCGGCGCGTCCGGTAGTGGTGGCTCGGCATTAGGCTTTTGCTGGTAAAGA‑TTGCGTGCGTTGgggcgggcgg                                                                                                                                                  >  7:1499337/1‑149 (MQ=255)
        ggcctcgggaatAGCCTGCTGCTGGTCCCCTTTGCTGGCGTTGGCGCGGGCAAT‑AGCCGCTGCCACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATa                                                                                                                                                <  1:646670/140‑1 (MQ=14)
         ggCTCCGCATTTGAGTGTTGCTGTTCCCGGTTGCGGGCTTTGGCTCTGGCCAT‑AGCCGCTTCGACGGCTGCTTTTCGCTGATCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAg                                                                                                                                               <  5:1400641/151‑1 (MQ=14)
         ggCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAAT‑AGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAg                                                                                                                                               <  8:1298619/151‑1 (MQ=255)
         ggCTCCGCATCACCCTGCTGCTGGTCCCGTTTGCGCGCGTTGGCGCGGGCAAT‑AGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATa                                                                                                                                                <  3:295401/150‑1 (MQ=14)
            gccGCATTTGCCGGCTTCTGCTCCGGTGTGCGGTCGTTGGCGCGGGCAAT‑AGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑Cgg                                                                                                                                           <  2:742380/150‑1 (MQ=14)
             cgcccttcggcGGTTGCTGGTCGGGTTTGCTGGCTTTTGCGCGGGCAAT‑AGCGGCTGCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑Cg                                                                                                                                            <  6:1388946/139‑1 (MQ=14)
              cGCAGTAGCCGGGGGCGGTTCCCGTTTTCTTCCTTTGGCTCGGGCAAT‑AGCCGCTTCGACTGCGTCTTTGCTCGTATCTAGGTTTCTTTCTGGCTCTGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCt                                                                                                                                         <  5:350182/151‑1 (MQ=9)
               gCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAAT‑AGCGTCTTATCAGGCGGCTTAGCCCGTCGAGACCGGAAGTGCTGGCTCGGAATTAGGCTGTTGCTGTTAAATA‑TTGCGGGCTTTGGCGCGGGcggtaggggggg                                                                                                                                         >  7:1958040/1‑140 (MQ=255)
               ccATTAGACTTTTTCTGTTCCCTAGTGAGTGCTTTGGTTCTGGAATT‑TGTTGCTTTGTCTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCt‑t                                                                                                                                       <  4:494296/150‑1 (MQ=9)
                cATTAGCCGGTGGCTGCTGCCGATTGAGGGATTGGGGTCTGGCCTTCCGCGG‑TGCGACGTCCGCTTTGCGCGGATCAACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCt‑t                                                                                                                                       <  7:2148136/150‑1 (MQ=2)
                 attatccttgtGCTGGTCGCGTTTGATGGCTTTTGCGCGGGCAAT‑AGCCGCGTCCACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑Tc                                                                                                                                      <  8:1969515/140‑1 (MQ=14)
                    aGCCTGCTGCTGGTCGCGTTTGGGGGCGTGCGCGCGGGCAAT‑AGCCGCGGCCACGGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGAcg                                                                                                                                  <  1:2135218/151‑1 (MQ=11)
                    aGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGCCAAT‑AGCGCCTTCGACGGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGGTCGGCATTAGCCTGTTGCAGTTCTAGC‑TTGCGTCCTTGTGAACGCGCCTTAG‑GGGCT‑TGGAcg                                                                                                                                  >  3:791214/1‑151 (MQ=14)
                     gcctgctGCTGGTCGGGTTTGTTCGCGTTAGCGCGGGCAAT‑AGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGAcgg                                                                                                                                 <  7:2283058/145‑1 (MQ=11)
                     ccctggtGCTGTTCGGGTTTGCGCGCGTGGGCGCGGGCAAT‑AGCGGCGTCGACGGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGAcgg                                                                                                                                 <  1:2280216/145‑1 (MQ=11)
                     ccctgctGCTGTTCCCGGTTGCGGGCGTTCGCGCGGGCAAT‑AGCCGCGGCTACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGAcgg                                                                                                                                 <  3:521688/145‑1 (MQ=14)
                      tcttgagaggTTCCCGATGGAGAGCTTTTGCTGGGTCTAT‑AGTGTTTGCGTCGTCGTCTTTGTTCGGATCTACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGCGCTTTGGCGCGGGCGATAG‑CTGCT‑TCAAcgg                                                                                                                                 <  6:1049270/141‑1 (MQ=2)
                         ggtGCTGTTCCGGTTTGCTGGCTTTCGCGCGGGCAAT‑AGCGGCTGCTACTGCGGCTTTGCGCGGATCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGAcggcg                                                                                                                               <  6:52766/147‑1 (MQ=11)
                            gCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAAT‑AGCGGCGTCGACGGCTGCTTTGCGCGGAGCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCtt                                                                                                                           <  1:1553741/150‑1 (MQ=11)
                             cTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAAT‑AGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTGGGGAGCGGGCAAGTG‑TGGCG‑TCGAGTGCGGCTTTg                                                                                                                         >  5:454236/1‑151 (MQ=11)
                               ggtggcgatttctctcTTTGGCTCGTGGAAT‑CGCTTCTTCGATTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCTCGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTgc                                                                                                                        <  4:2136213/135‑1 (MQ=14)
                                ttCCCGTTTGCGCGCTTTGGCTCGGGCAAT‑AGCTGCTTCGACGGCGGGTTTGCGAGGATCGCCATGGGGTGCTGGGTCAGAGGTACCCTGTTGCGGGTAGAGC‑TTGAGTGCTTTGGCGCGGGCCGTAG‑GGGGG‑TGGACTGCAGTTTTgcgg                                                                                                                      >  3:1808838/1‑150 (MQ=255)
                                gtCCCGTTTGCGCGCTTGGGCTCGGGCAAT‑AGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTGCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTgcgc                                                                                                                      <  7:2039069/150‑1 (MQ=255)
                                 gcgggTTTGAGGGCGTTCGCGCGGGCAAT‑AGCCGCTTCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCTCGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTgcgc                                                                                                                      <  2:2048762/146‑1 (MQ=14)
                                  cgagTTTGCTGGCGTTCGCGCGTGCAAT‑AGCCGCTGCTACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGCTGCTGTTCCCGT‑TTGCGCGCTTTGGCTCGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCgg                                                                                                                    <  7:2095777/148‑1 (MQ=17)
                                  cccGTTTGCGCGCTTTGGCTCGGGCAAT‑AGCTGCTTCGACGGCGGGTTTGCGGGGATCGGCAACTTGTGCTGGGTGCGCATTAGCCTCTTGCTGATCACGC‑GTGCGGCCTTGGGCTCGGGGTATAG‑CTGGT‑GCGCCGGCAGATTTACGCgg                                                                                                                    >  7:953992/1‑151 (MQ=255)
                                  cccGCTGGCGCGCTGTGGCTCGTGCAAT‑ATCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGCCTCCGCATTAGCCGGGTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCgg                                                                                                                    <  7:757035/151‑1 (MQ=14)
                                   ccGTTTGCGCGCTTTGGCTCGGGCAAT‑AGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCCCGGGCAATAG‑CGGCT‑TCGACGGCCGGTTTGCGAggc                                                                                                                   >  3:724742/1‑150 (MQ=255)
                                    ggTTTTCGCGCATTAGCGCGGGCAAT‑AGCGGCGTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGGTGCTGTTCCCGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGAt                                                                                                                  <  1:558078/150‑1 (MQ=14)
                                    ccttttgtggcTTTCGCGCGGGCAAT‑AGCCGCGGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCTCGGGCAATAG‑CGGCT‑TCTACGGCGGCTTTGCGCGGAt                                                                                                                  <  6:2185922/142‑1 (MQ=11)
                                     gggggccagcgttGGCTCCCGCCCT‑AGCGGGGTCGCCTGCCGCTTTGCGCGGATCGACGTGTTGTTCTGGCCCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGAGCTTGGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATc                                                                                                                 <  2:494892/140‑1 (MQ=11)
                                     ccgcgcgtccgttctcTCGGGCAAT‑AGCGGCTTCTACGGCTTCTTTTCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTTTTGCTTTTCCAGC‑TTGCTTGCTTTGTCTCGGGCTATAG‑CTGCT‑TCAACGGCAGTTTTACGTGGATc                                                                                                                 <  8:1559296/136‑1 (MQ=14)
                                       ttGCTCGCCTTAGCTCGGGCAAT‑AGCCGCGTCTACTGCTGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGTCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTTGCTCGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCg                                                                                                                <  2:1288724/150‑1 (MQ=14)
                                       ttGCGCGCTTTGGCTCGGGCAAT‑AGCGGCTTCGACGGCGGGTTTGCGGGGGTAGACCAGTGGTGGTGGCTCCACATTAGACTGATTCTGTTCAATC‑TGGCGTGCTTTTGGAAGGGAAATAG‑CGGCT‑TCGCCGGCGGGTTTggggggggcgg                                                                                                               >  3:2141837/1‑141 (MQ=9)
                                        tgtgggcgtttgCTCGTTCAAT‑AGCCGCGTCAACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGT‑TTGCGTGCTTTGGCTCGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGa                                                                                                               <  8:2062815/139‑1 (MQ=11)
                                            ggcgttagCTCGGGCTAT‑ATCGGCTTCTATTGCCGCTTTGCGCGGATCTAGCTGTTGTTCTGGCTCGTCTTTATCCTGTTGCTGTTCCTGG‑TTTCTTGCTTTGGCTCGGGCAATAG‑CGGCT‑TCTACTGCGGCTTTGCGCGGATCGACCTGt                                                                                                          <  4:2167662/144‑1 (MQ=9)
                                            cgcTTTGGCTCGGGCAAT‑AGCCGCTGCGACGGCTGCTTTGCGGGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGt                                                                                                          <  7:1249910/151‑1 (MQ=255)
                                              ccttGGCTCGGGCAAT‑AGGGGCGTCTACTGCGGCGTTGCGCGGATCTTCCTGGTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCGAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGttc                                                                                                        <  2:703399/149‑1 (MQ=14)
                                              cctgcgCTCGTGCAAT‑AGCGGCGTCGACGGCCTCTTTGCGCGGATCTAGCTGGTGTTCTGCATCCGCATTAGCCTGGTGCTGTTCCCGG‑TTGCGTGCTTTGGCTCGGGCAATAG‑CCGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGttc                                                                                                        <  1:1617589/146‑1 (MQ=11)
                                               gtcggCGCGGGCAAT‑AGCGGCTGCAACGGGGGCTTTGCGCGGATCCACCTGTTCTTCTGGCCCGGCATTAGCCTGGTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGttct                                                                                                       <  7:2012369/148‑1 (MQ=11)
                                                 tGGCGCGGGCAAT‑AGCGGCTTCTACTGCTGCTTTGCGCGGATCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCTCGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGttctt                                                                                                      <  4:2283833/150‑1 (MQ=11)
                                                   gggcGGGCAAT‑AGCCGCGTCCAGGGCTGCTTTGCGCTGAGCGAACTGCTGTTGTGGCTCCTGATTAGCCTGCTGCTGTTCCTGC‑TTTCTGGCTTTCGCTCGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTg                                                                                                   <  7:1401918/148‑1 (MQ=2)
                                                   gCTCGTGTAAT‑AGCCGCTTCTACGTCGTCTTTGCGCTGATGTACTTGTTGTTCTGGCTCGTCATTATCCTGTTGCTGTTCGAGC‑TTTCTTGCTTTTGCTCGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGTtcttct                                                                                                    <  8:810750/150‑1 (MQ=14)
                                                   gCTCGGGCAAT‑AGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTCCGTGCTTTGGCACGGGCAATAG‑CTGCT‑TCTACTGCAGGTTTTCGAGGATCGAccagagattctg                                                                                                   >  6:674958/1‑141 (MQ=14)
                                                    cTCGGGCAAT‑AGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGAGCTTTGGCTCGGGCGATAG‑ATGCT‑TCCACGGCGGCTTTGCGGGGAGCggcggggtggtgggg                                                                                                  >  7:1560122/1‑137 (MQ=11)
                                                               cgccgcggccaCGGCCGCTTTGCTCTTATCTACCTGTTCTTCTGGCACCGCATTAGCCTGTTGCTGTTCCTGC‑TTGAGTGCTGTGGCACTGGCAATAG‑CGGCG‑GCGACGGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTa                                                                                        <  5:1825242/141‑1 (MQ=11)
                                                                gCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCAGCTTTTCGCGGATCGCCCTGTGGTTCGCGTTCCggagt                                                                                         >  1:4439/1‑145 (MQ=11)
                                                                        caCGGCCGCGCTGCGCGGAGCCACCTGTGCTTCTGGTTCGTCATTCGCCTGGAGCTGTTCCCCG‑ATCCGTGCTTTTGCCCGGGGTTCAG‑CCGCT‑TGCTCTTCAGATCTGCGCGGATCCACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGc                                                                               <  5:997131/150‑1 (MQ=2)
                                                                              ggcGTTGCGCGTATCCACCTGTTGTTATGGCTCGGTATTAGTAGTTTTCTGTCCTCGG‑TTGCGTGCTTTGGCTCGTGCAATAG‑CGGCT‑TCGACGGCTGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTcc                                                                         <  8:668747/151‑1 (MQ=11)
                                                                               gcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTCGTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTcc                                                                         >  3:1879446/1‑150 (MQ=255)
                                                                               ccttggcgatgATCAACGTGTTGTTCTGTCTTTGCATAACCGTGGTGCT‑TTGGATCTTTGCGTGCTTTGGCTCGTGCAATAG‑CGGCT‑TCGACGGCTGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCa                                                                        <  6:808663/141‑1 (MQ=2)
                                                                                cTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGAGCTTTGGCACGGGCAATAG‑CTGCT‑TCAACGGCAGGTTTCCGGGGATCACCCACTTTTTCTGCGTCCGCAGTATCCTgaagatctgcc                                                                         >  5:1451317/1‑139 (MQ=2)
                                                                                      gcgGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGAGCTTTGGCGCGGGCGATAG‑CGGCG‑GAGGCGGGGGCTGTGGGGGGATCGAGGGGTTGGGATGGTTCCGCAGTAGCGTGGTGGTGttagtgattgc                                                                  >  6:2269642/1‑141 (MQ=2)
                                                                                      gcgGATCGACCTGTTCTTCTGGCTCGGCAGTAGCCTGGTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTgcg                                                                 <  7:1293731/151‑1 (MQ=255)
                                                                                      ccgGAGCGACCTGTTGTTCTCGCTCAGCAGGAGCCTGGAGCTCCGCCATC‑TTGAGTGCGTTCAGACGTGCCATCT‑CCGGA‑TCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTgcg                                                                 <  3:293932/150‑1 (MQ=2)
                                                                                        ggATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGA‑TATCGGGATATGGCACGGCTCATAG‑CCACTGACCAC‑TAGGGTTTGCGCGTGTCGACGTGTTCTTCTGCTTACGCATTAGCCTGTTGCTGTTCCGGCGTgcggg                                                               >  3:1106519/1‑149 (MQ=9)
                                                                                           tCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCAAGG‑TAGCG‑GCCGAGGTCAGGGCGAAAGTCGCCA‑TGTACGGCGGCGTTGCGCGGATGGAGCTTGTAAAATGGTTCCGCATTAGGGTGGTGCTGttgctgggtgggggcgg                                                            >  7:1084630/1‑136 (MQ=255)
                                                                                             gACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGAGCTTTGGCCCGGGCGATAG‑CTGCT‑TCGACGGCGGTTTTACGTGGATCCGCAACTGTTTCTGGTTCGTAATTATCCTGATGTTGTTACATCttaagagcacac                                                          >  3:220814/1‑141 (MQ=2)
                                                                                              aCCTGTTGTGCTGCCTCCGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCTGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTgg                                                         <  8:891393/151‑1 (MQ=255)
                                                                                                 tgttgtTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCGCGGGCAATAG‑CGGCT‑TCGACGGCGGGTTTGCGGGGATCGCCCAGTTGTTCTGGGTCCGCATTTGCCTGTTGCTGTTCCTGCTTgccggctgtgtccc                                                      >  3:2100608/1‑139 (MQ=11)
                                                                                                 cgggcttCTGGTTCTTCAATAGCCTCTTGCTGCTCCAGC‑TAGCGGCCTTCGGCACTGGACATCC‑GCGCT‑TCGCCCTCCGGTTCGCGCGGATCAACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCAc                                                      <  3:639098/146‑1 (MQ=2)
                                                                                                   ttgttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGAGCTTTGGCACGGGCAATAG‑CTGCT‑TCAACGGCAGGTTTCCGAGGATCGACAACGTTTTCTGCTTCCTAATTATCCTGTTGATCTTCCAGATTGCGACATTTGGCagcg                                                    >  8:750031/1‑148 (MQ=2)
                                                                                                   ggcatccgggacGGCAGTAGCCTGGTGCTCTCCGCCC‑TTGGGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCTGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACgg                                                    <  7:1255494/140‑1 (MQ=11)
                                                                                                    agtccTGACTCGACATGAGCCGGGTGCTCTTCCCCG‑CTGCGTGCTTTGGCCCGGGCAATAG‑CGGCT‑TCGACGGCTGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACggg                                                   <  1:2176411/147‑1 (MQ=11)
                                                                                                      ttttgtttactcATTTGCGTGTTGCTGTTCGTGT‑TTTTTTGCTTTTGCTCGGGCAATAG‑CCGCT‑TCTACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGc                                                  <  6:1115694/139‑1 (MQ=11)
                                                                                                      ttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCCCGGGCAATAG‑CTGCT‑TCGACGGCGGCTTTGCGGGGATCGCCCAGTTGTTCTGGGTCCGGATTATCCTGTAGCTGTTCCAGATTGCGAGCttagtcccggta                                                  >  5:2280114/1‑140 (MQ=11)
                                                                                                      ttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCCCGGGCAATAG‑CGGCT‑TCGACGGCGGGTTTGCGCGGATCGCCATGTGGTTCTGCGTCCGCATTAGCCTGTTGCTCTTCCAGCTTccggcagtagtcccgggg                                                  >  1:849433/1‑135 (MQ=11)
                                                                                                        cTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGGTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGGATTATCCTGTTGCTGTTCCAGCTTGCGAGAtttttcccggtaaat                                               >  3:1485401/1‑139 (MQ=11)
                                                                                                              cGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGGTTTGCGCGGATCGCCCTCTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGGTGTTGCCCGGCCAATCGCAGc                                         >  1:433957/1‑151 (MQ=11)
                                                                                                                   ttAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTCTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCg                                     >  3:1901866/1‑150 (MQ=255)
                                                                                                                    tAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CTGCT‑TACACGGCGGCTTTGAGAGGATCGAGCTGTTCTTCTGGTTGCGCATTATCCTGTTGCTGTTGCAGCTTGAGAGCTTTGGCGCGGGCGATAGCGGcgtgggg                                   >  4:1118756/1‑145 (MQ=11)
                                                                                                                     ccccTCTTGCTGTTCCAGC‑TTGCGTTCTTTGTAACGGTCAATAG‑CCGCT‑TCGACGGCTGCTTTGCGCTGATCTACCTGTGCTTCTTGGTCGGTATTAGGATGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAc                                   <  2:1908071/148‑1 (MQ=14)
                                                                                                                     acgctcttccgctcccAGC‑TTGCGTGCTTTGGCTCTTGCAATAG‑CTGCT‑TCGACGGCGGCTTTGCTCGGATCGACATGTTCTTCTTGCTCCGCATTAGCCTGTTGCTTTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAcg                                  <  2:689287/137‑1 (MQ=11)
                                                                                                                     aGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCTCGTGCAATAG‑CCGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTa                                                                                        <  4:872720/97‑1 (MQ=255)
                                                                                                                     aGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CTGCT‑TCGACGGCGGCTTTGCGAGGATCGACAACGTGTTCTGCTTCCGGAGTATCCTGATGATCTTCCAGATTCCCAGATTTTTCACGGGGGATAACGGGTTCGa                                    >  2:768251/1‑149 (MQ=2)
                                                                                                                       ccTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCTCGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGTTCATCTGGTTCCTCAGTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                                <  3:1128355/151‑1 (MQ=255)
                                                                                                                         tGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGCCATGTTCTTCTGGTTCCGCATTATCCTGTTGCTGTTCCAGCTTCCGATCTTTGGAACGGGCAATAGGAGCTTAAAcggctg                              >  2:387591/1‑149 (MQ=11)
                                                                                                                               tGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGGGGATCGCCCTCTGGTTCTGGGTCCGAATTATCCTGTTGCAGTTCCAGCATGCTCCCCTTCCCTCGCGCAATAGCTGCTTCTACGGCGGCttttg                        >  3:1912707/1‑149 (MQ=2)
                                                                                                                               tGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgc                        >  5:265476/1‑151 (MQ=255)
                                                                                                                               gttttcgtgtttttttGCTTTAGCTGGTGCAATAG‑CGGCT‑TCTACTGCTGCTTTGCGCGGATCTACCTGTTGTTCTGGATCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg                         <  2:1337230/136‑1 (MQ=11)
                                                                                                                                gtgcccgc‑ttgcttTCTTTGGCTCGGGCAATAG‑CCGCA‑GCGACGCCTGCTTTCCGCGCCTGCACCTGTGCTCGCGTCGCCGCTTTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                       <  7:658658/145‑1 (MQ=2)
                                                                                                                                gTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGGTTTGCGCGGATCGCCCTGGTCTTCTGGTTCCGCATTAGCCTGTTGGTGTGCCAGCTTGCGCGGTTTGGCCCGGTGAATAGCGGCTTCTAcggctggatttcg                       >  7:1707208/1‑142 (MQ=14)
                                                                                                                                   ccAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGGCCTGGTCTGCTGCTTCCGGAGTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCTATAGCGGCTTCGAcggcgggggtgcgggg                    >  8:1984099/1‑141 (MQ=11)
                                                                                                                                     cgC‑TTGCGTGCTTTTGCTCGGTCAATAG‑CCGCT‑TCGACTGCTGCTTTGCGCTGATCTACCTGTCCTTCTTGGTCGGGATTAGGCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                  <  4:1498490/150‑1 (MQ=11)
                                                                                                                                     aGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCTACGGCAGGTTTTCGCggct                  >  1:683950/1‑149 (MQ=11)
                                                                                                                                      gc‑ttgcttgcttATGCCCGTGCAATAC‑CTGCT‑TCGTCGGCTGCGTTGCGCGGAGCGACCTCTTGTGCTGGTTCGTTATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATc                 <  7:860728/151‑1 (MQ=11)
                                                                                                                                       c‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCTCATTATCCTGATGCTGTTCCAGCTTGCGCGCTTGGGCCCGGGGAATAGCTGCTTCGAGGGCAGGTTTGCGCGGATct                >  5:190519/1‑150 (MQ=11)
                                                                                                                                       c‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGCCCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATcc                >  7:27360/1‑150 (MQ=255)
                                                                                                                                           gCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCCGCTTTGCGAGGATCGACATGTTGTTCTGGTTCCGGAGTAGCCTGTTGGTGTTCCTGGTTGAGCTCTTTGGCGCGGGCTATAGGGGCTTCGTCGGCTGCTGTGTGGGGATctcgc             >  6:745065/1‑147 (MQ=2)
                                                                                                                                              tGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgg          >  3:2274927/1‑150 (MQ=255)
                                                                                                                                              tGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCCCCCTGTTGTTCTGGTTCCGAATTATCCTGTTGCTGTTCCAGATTGCGCCGTTTTTCCCGGGGAATAGCTGATTACACGCCAGCTTACCTCGGATctccaggg          >  1:1867393/1‑144 (MQ=2)
                                                                                                                                              tGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTCCGCGGATCCACCAGTTCTTCTGGTTCCGCATTAGCCTGTTGCTCTTCCAGCTTGCGCCCTTAGGCACCGGCAATAGCGGCATCGACGGCAGCTTTGCGCCGATCAACCtcg          >  4:1885937/1‑149 (MQ=14)
                                                                                                                                                cTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGGTTTGCGCGGATCCACCGGTTGTTCGGGTTCTGCATTAGACTGTTGCTGTTCCAGCTTGAGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTGTGCggggggggcccggtgg        >  7:2063820/1‑139 (MQ=11)
                                                                                                                                                    ggCTCGTGCAATAG‑CCGCT‑TCGACGGCTGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCa                                                                        <  4:1693441/83‑1 (MQ=11)
                                                                                                                                                       |                                                                                                                                                       
TGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAAT‑AGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGC‑TTGCGTGCTTTGGCACGGGCAATAG‑CGGCT‑TCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGG  >  DH1/2169524‑2169822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑