| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | DH1 | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 3,668,919 | 1 | . | T | 96.8% | 1380.1 / 29.6 | 380 | pseudogene (358/455 nt) | lpxA | hydroxymyristoyl‑ACP dehydratase |
| Reads supporting (aligned to +/- strand): ref base . (8/4); new base T (185/183); total (193/187) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 420 total aligned reads displayed.
CCCTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑T‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCTGT > DH1/3668769‑3669064 | cccTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGcgc‑g > 5:650950/1‑151 (MQ=255)cccTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGcgc‑g > 3:183403/1‑151 (MQ=255) ctTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGC‑ACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t‑tt < 8:483360/149‑1 (MQ=255) ccACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t‑tttttc < 2:1112084/151‑3 (MQ=255) cacaATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t‑tttttcg < 3:1662855/151‑4 (MQ=255) cacaATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t‑tttttcg > 7:806856/1‑148 (MQ=255) acaATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGCGG‑T‑TTTTCg > 7:291524/1‑150 (MQ=255) aTGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAg < 8:45260/151‑1 (MQ=255) ggCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTg > 5:1011749/1‑151 (MQ=255) ggCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAACACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGt < 4:1332541/150‑1 (MQ=255) ggATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTcc > 3:1376304/1‑150 (MQ=255) ggATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCa < 1:490759/151‑1 (MQ=255) ggATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCa < 2:941326/151‑1 (MQ=255) tGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATg > 4:652572/1‑150 (MQ=255) gCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGAt < 7:1134573/151‑1 (MQ=255) gCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACACCTTTAAAACGGGTCATGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGAt < 7:475889/151‑1 (MQ=255) aaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCAttt > 6:927605/1‑151 (MQ=255) aaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCAttt > 5:215379/1‑151 (MQ=255) aGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTg < 1:1606568/151‑1 (MQ=255) aGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTg < 8:831742/151‑1 (MQ=255) ggCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGa < 7:1401592/151‑1 (MQ=255) ggCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGa < 7:49911/151‑1 (MQ=255) cGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATc > 5:1631066/1‑151 (MQ=255) cGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATc > 3:1242799/1‑151 (MQ=255) cGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATc > 1:265373/1‑151 (MQ=255) ggATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCACCCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCg > 6:224832/1‑151 (MQ=255) ggATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACAGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATcc > 3:60472/1‑150 (MQ=255) ttATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCa < 7:983740/150‑1 (MQ=255) caatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCAc > 5:1140448/1‑151 (MQ=255) aatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACg > 7:720879/1‑151 (MQ=255) caCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCGTTTGATCGCCAGGCACGAc < 7:1463870/150‑1 (MQ=255) caCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGAcc > 1:1439888/1‑151 (MQ=255) gTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCggg < 3:438911/151‑1 (MQ=255) tATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGCCCGGgc > 8:1625067/1‑151 (MQ=255) tATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGgc > 4:1534971/1‑151 (MQ=255) cAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGCTCAGGCCGCGGCGC‑GTT‑TTTTCGAAACTGACTTCCAAGATCATTTTATAGCCAGCCACGACCGCGCGCt > 7:1494254/1‑151 (MQ=255) aGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCtt < 6:1019797/151‑1 (MQ=255) gCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGa < 4:850623/151‑1 (MQ=255) ccTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGaa < 7:1268114/151‑1 (MQ=255) cccGGCTACTAGCACACATCATCGTTGCTTCTCATACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCTTGCGCTTGAAgcg < 6:404611/151‑1 (MQ=255) ccGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTGGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgcgc > 5:79123/1‑151 (MQ=255) cGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgcgcg > 4:567628/1‑151 (MQ=255) cGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgcgcg > 3:1126480/1‑151 (MQ=255) cTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCtt > 3:982002/1‑151 (MQ=255) tACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGCCCGGGCGCTTGAAGCGCGCTTc > 4:445261/1‑151 (MQ=255) gAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTc < 1:583409/151‑1 (MQ=255) cacacaTCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAAt < 2:301033/151‑1 (MQ=255) cacaTCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCGTCGTCAATAc > 7:942861/1‑151 (MQ=255) catcatCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATAccc > 3:83771/1‑150 (MQ=255) catcatCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCa < 7:418432/151‑1 (MQ=255) atcatcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAg < 7:1599269/151‑1 (MQ=255) agcggtGCTTCGCAAACTACTTTACCATCGACCAGATGAACGCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATGATTTGATCGCGAGGCACGACAGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGa < 6:191960/146‑1 (MQ=255) cGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGaa < 5:1595211/150‑1 (MQ=255) cGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAag < 6:80791/151‑1 (MQ=255) tGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTTCATGATCATTTGATCGCCAGGCACGCCCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagt > 2:1337610/1‑149 (MQ=255) gCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagtagt < 1:771886/151‑1 (MQ=255) ttCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCCCCAGGCACGACCGGGCGCTTGAAGCGCGCATCGTCAATACCAGCCAAgtagta > 8:331025/1‑150 (MQ=255) tCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTAc > 5:960425/1‑150 (MQ=255) cGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGTGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACa < 8:1392657/150‑1 (MQ=255) actactTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTACATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATAACAGCGAAGTAGTACAGCTCAc > 5:1444745/1‑151 (MQ=255) tactTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTGGAAAGTGACTTCCATGATCATTTGATCGCCCGGCCCCCCCGGGCGCTTGAAGCGCGCGGGGTCAATACCAGCGCAGTAGTACAGCTCcccc > 8:1515795/1‑151 (MQ=255) actTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCg < 6:1178583/151‑1 (MQ=255) tttACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGt > 8:1071468/1‑151 (MQ=255) tACCATCGACCAGATCAACAACTTTAAAACGGGGCAGGCCGCGTCGC‑T‑TGTTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCTAAGTAGTACAGCTCACCCGGtt < 2:750380/150‑1 (MQ=255) tACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGttg > 4:1488672/1‑150 (MQ=255) ccATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTccn < 4:165579/151‑2 (MQ=255) cATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTcc > 1:43121/1‑149 (MQ=255) cATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTcc > 5:1261311/1‑149 (MQ=255) aTCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGt < 1:994310/151‑1 (MQ=255) gACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGtttt > 4:765519/1‑151 (MQ=255) aCCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGCTCGCCAGGCACGCCCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGGTCCCGTTTTc > 6:520214/1‑151 (MQ=255) aCCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTc > 5:286816/1‑151 (MQ=255) agagCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCt > 6:126317/1‑150 (MQ=255) agagCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCt > 1:1332889/1‑150 (MQ=255) gagCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTAc > 4:333726/1‑151 (MQ=255) ccccTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCtttt > 3:27642/1‑151 (MQ=255) ccccTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCtttt < 5:462702/151‑1 (MQ=255) ccccTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCtttt < 4:35752/151‑1 (MQ=255) cccTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCCCCCGGTTCCAGTTTTCCTACGCtttt > 3:721837/1‑150 (MQ=255) cccTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCtttt > 1:367817/1‑150 (MQ=255) cccTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTa < 6:1617146/151‑1 (MQ=255) tAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGc > 1:843908/1‑151 (MQ=255) aaaaCGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGcc < 6:1473246/151‑1 (MQ=255) aaaaCGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGcc < 8:1478439/151‑1 (MQ=255) aaaaCGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGcc < 2:1620647/151‑1 (MQ=255) aaaCGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAATCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCCGTTCCACTTTTACTACGCTtatataggaa > 8:571765/1‑144 (MQ=255) aaaCGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCtt < 7:572340/141‑1 (MQ=255) aaaCGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGcc > 3:1495816/1‑150 (MQ=255) aaCGGGTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGcc > 5:385666/1‑149 (MQ=255) gggTCAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAAt > 2:1223666/1‑151 (MQ=255) cAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACCGCTCACCCGGTTGCAGTTTTCCTACGCTTTTAAACGCCAGGATACCt > 4:1632180/1‑151 (MQ=255) cAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCt > 1:101024/1‑151 (MQ=255) cAGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCCCTTCCTCAATACCAGCGAAGTAGTACAGCTCCCCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCt > 8:1257556/1‑151 (MQ=255) aGGCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGTCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTg > 3:1435385/1‑151 (MQ=255) ggCCGCGGCGC‑GTT‑TTTTCGAAACTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGCCGCTTGAAGCGCCCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACCCCAGAATACCTGt > 5:543438/1‑151 (MQ=255) gCCGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGtt < 7:261532/151‑1 (MQ=255) ccgcgccgc‑gtT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTg < 4:1151600/151‑1 (MQ=255) ccGCGGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTg > 3:1032302/1‑151 (MQ=255) cgcgGCGC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCCCGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGc > 6:673099/1‑151 (MQ=255) cggcgC‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCt < 3:1560929/151‑1 (MQ=255) | CCCTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑T‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCTGT > DH1/3668769‑3669064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |