| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 2,169,720 | 0 | C | G | 25.2% | 154.5 / 26.9 | 136 | E614Q (GAA→CAA) | rsxC | electron transporter RsxC |
| Reads supporting (aligned to +/- strand): ref base C (61/37); new base G (28/5); total (94/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.78e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 146 total aligned reads displayed.
TGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGC > DH1/2169573‑2169870 | gcgcgcGGGCAATAGCCGCGTCTACTGCGGCTTTGCGCGGAGCGACCTGTTGTTCTGGAGCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGttctt < 3:785155/145‑1 (MQ=14) gCTCGGGCAATAGCGGCTTCGACTGCGGCTGTGCGCGGATCAACCTGTTGTTCTGGGTCGGCATTAGCCTGTTGCTGTTCCCGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTg < 5:485822/151‑1 (MQ=14) aTAGCGGCTTCGACGTGCGCTTCGCGCGGATGGACCTGTTCTTGTTGCTCGTCAGTAGGCTTTTGCTGGTCGTGCTTGCTTGCTTTCGCTCGGGCAATAGCCGCTTCCACTGCCGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGc < 3:403936/149‑1 (MQ=255) aTAGCGGCTTCGACGGGCGCTTTGCGCGGATGGACCTGCTGTTGTGGCTCTTCATTAGGCTGCTGCTGTGCGTGGTTGCTGGCTTTCGCTCGGGCAATAGCGGCTTCGACTGGCGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGc < 3:396177/149‑1 (MQ=9) aGCGGCGTCGACGGCTGCTTTGCGCGGATCGCCCTGGTGTGGTGGCTCGGGATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTa < 7:341651/151‑1 (MQ=14) cgccgcgcccgccgcTTTGCGCGGATCTATTTGTTCTTCTGGCTCCGCATTAGCCTGTTTCTGTTCCCGATTGCTTGCTTTGGCTCGTGCAATAGCTTCGGAGACTGCCGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGcc < 2:757129/138‑1 (MQ=2) gtCGACGGCCTCGTTGCGCGGATCACGCTGCTGTTCTGGCGCCGGATTAGCGTGCTGGTGGTCGAGGTTGTTTGCGTGTGCGCGGGCAATAGCCGCTTCCACTGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGt < 5:1183137/150‑1 (MQ=2) gcgcccgcgccTTCGCGCGGCTCCACCTCCGCTGCTGGCACCGCATTAGCCTGTTGCTGTTGCAGCTTGCGTTCTTTGGCACGGGCAATAGCGGCTTCGTCGGCGGCT‑TTGCGCGGATCGACGTGTTCTTCTGGTTCCGCATTAGCCTGtt < 1:594149/145‑1 (MQ=11) gcggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCAACGGCAGGT‑TTACGAGGATCAGCAACTTATTCTGCTTCGTCATTATCCTGATgatctt > 6:1651249/1‑146 (MQ=11) cggcTTTGCGCGGATCGACCTGTTGTTCTGGATCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCTGCTTCAACGGCAGAT‑ATCCGAAGATCGACCTGTTCTGAAAGATACTCATTAGCCTGTTTCttatc > 8:250818/1‑147 (MQ=2) gATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCTGCTTCGACGGCAGGT‑TTCCGAGGATCGCCATCTGGTTCTGCTTCCTGAGTATCCTGATGGTCTTCCAGGTTccgact > 7:1168051/1‑148 (MQ=2) aTCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCTGCTTCGACGGCGGGT‑TTCCGCGGATCACCATGGGGTGCTGGTTCGGAATTTGGCTGTTCCTCTGCCAGCTAgcgagt > 5:1053865/1‑147 (MQ=2) tCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCTATAGCTGCTTCGACGGCGGCT‑TTGCGAGGATCGACCTGGTGTTCTGGTTCCGCATTAGCCTGTTGATCTTCCAGCTTGCGCGGtt > 5:316247/1‑151 (MQ=11) aCCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCCGGT‑TTACGAGGATCGGCATCTTGTTCTGGTTCGTAATTATCCTGAAGATGTTCCAGAttacaacctatgg > 1:261973/1‑140 (MQ=2) cgcgtggtCTGGCGCGGCATTTCCCTGCTGCTGTTCCAGCTTGCGCGCTTTGGCTCGTGCAATAGCGGCTTCGACGGCTGCT‑TTGCGCGGATGCAGCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCa < 7:79566/144‑1 (MQ=11) cTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCAACGGCAGGT‑TTACGAGGATCACCAACTTATTCTGCTTCCGAATTATCCTGAAGATGTGCCAGAttcccggattattcc > 4:4249/1‑138 (MQ=2) tgttgtTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCGATAGCTGCTTCGACGGCAGCT‑TTACGCGGATCAGCATGGTGTTCTGCTTCGTAATTTTCCTGAAGGTCTTCCAGCTTccgagagttttga > 1:777936/1‑140 (MQ=2) gttgttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGGT‑TTACGAGGATCGCCCTGGGGTTCTGCGTCCTGATTATGCTGATGATCTTCCAGGTTgcggcgttgttgcgg > 8:1322368/1‑139 (MQ=2) gttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCCACGGCGGAT‑TTGCGAGGATCGACCACTGGTTCTGGTTCCGAATTAGCCTGAAGGTCTTCCAGATTgcgagagtagtccgcgtg > 6:334756/1‑136 (MQ=11) ttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCTGCTTCGACGGCGGGT‑TTGCGAGGATCGGCCTGTGGTTCTGGTTCCTTATTTTCCTGTTGGTGTTCCAGGTTGCGCGGTTTCGcggtggcc > 3:146911/1‑144 (MQ=11) tCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCT‑TTGCGGGGATCGACCTGTGGTTCTGGTTCCGCATTAGGCTGGTGGTGTTCCAGCTTGCGAGCTTTgtccgggtca > 1:1147229/1‑141 (MQ=11) tCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGT‑TTGCGGGGATCGGCAACGGGTGCTGCTTCCGAAATAGGATGATGGTCTTCGAGCTTAAGCGCTTTGGCGCGGGcg > 8:145243/1‑149 (MQ=2) tCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCT‑GAGCCCCGATCGACGGCAGGCCCGGCTGCAGAAGTAGCCTCTTGCTGGTCCAGCTTGCGCGCATTGCCCCgggggg > 3:1547191/1‑148 (MQ=2) cgctcttcATTTGGCTGTTGCTGTTCCGGTTTTCTGGCTTTGGCGCGGGCAATAGCGGCTGCGACTGCGGCT‑TTGCGCGGATCTACCTGTTGTTCTGGATCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa < 6:297752/143‑1 (MQ=11) cgtgttcaGCCTGCTGCTGTTCGTGTTTGTTGGCGTTCGCTCGGGCAATAGCGGCTTCTACGGCGGCT‑TTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCg < 4:758837/142‑1 (MQ=11) ggCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCAATATCGTATTCGAGTACAAGATTGCTAGATTTGGCACGGGCAATATCGGCt > 8:528203/1‑151 (MQ=14) cATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCGCGGACATAAGAAGAGACTCCTGCAGCT‑AAACACTGAGCTACCAGTTCTACAGGATCCGCATTAGCCTGTTAATGTAAAAAATTGCGGGCTTTGGCTCggggatgggggggggg > 6:1214373/1‑138 (MQ=2) tAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAc > 1:279608/1‑151 (MQ=255) aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCCATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGCCCAGGGCTTCTGGGTCCGGAGTAGCCTGATGCTGTTCCAGGTTGCGCGCGTAGTGCCGGGGAAGAGCGGCTGCGCcg > 2:1616510/1‑151 (MQ=11) gCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCAAGCTTGCGCGCTTTGGCGCGGGCAATAGCTGCTTCGAcgg > 8:654492/1‑151 (MQ=16) cccgggggctgctCCAGCTTTAGCGCTGTGGCGAGGGCATACGCGCCTGCTTCCGCTGCG‑TGGCGCGGAGCCCGCTGTTCTTCCGCTGCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAcgg < 3:751726/144‑1 (MQ=2) tGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTTCGAGGATCGACCTGTTATTCTGGTTCCGCATTATGCTGATGGTCTTCCAGCTTGCGAGCTTATGCCCCGGAAATAGCTGCTACTAcggca > 6:628173/1‑149 (MQ=11) gTTGCTGTTCCAGCTTGCGTGATATGGCAAGGGCAAGAGCGGCTTCGACGGCGGCT‑TTGCGCGGATAGACCTGTTCTTCTGGATCAGCATTAGCAATATGCTGTTCCAGCTTgcgcg > 2:1370053/1‑117 (MQ=11) tGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTCTTCCAGCTTGCGCGCTTTGTCACGGGCAATAGCTGCTTCGAcggcgcgtt > 8:1485903/1‑147 (MQ=255) gCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGT‑TTGCGAGGATCGGCAAGTGGTTCTGGTTCCTGATTATCCTGGTGGTGTAGCAGCTTGCGCTCTTTGACGCGGGCAATAGCTTCTGCGACGGAGGtttt > 8:475093/1‑151 (MQ=12) cccgctCCCGCTTGCGTTCTTTTTAACTGTCAATCGCTGCATCGACCGCTCCA‑TTGCGCTTTTCTATCTTTTCTTCTAGGTCGGTCTTACGATGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt < 4:789676/146‑1 (MQ=2) cTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGAT‑TTGCGCGGATCGACAACTTGTTCTGGTTCCGGATTATCCTGTTGATGTTCAAGATTTCGCGATTTGTCTCGTGCCATAGCTGCTTCTACGTCGGCTTTg > 6:1164900/1‑151 (MQ=11) tGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCTACGGCAGGTTTgc > 7:190184/1‑151 (MQ=255) tCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTCCGAGGATCGACATGTTTTTCTGCTTCCTGATTATCCTGTTGATGTTCCAGGTTCCGGCATTTGGCCCGTTAAATAGCTCCTTAGAccgacgtgttgcg > 4:675310/1‑137 (MQ=2) tCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑GTGCGCGGATCGCCGGGGTCGTCTGGTGCCGGGTTAGGCTGTTGGTGTGCCAGCTTGCGGGGTTTGGCTCGGGCGATAGCGGCTTCGCcggggggggggcggg > 3:1200337/1‑142 (MQ=2) ccAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGCCATGTTGTTCTGGTTCCGCATTATCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGTGCAATAGCGGCTTCGACGCCGGCTTTACTCgg > 7:21471/1‑151 (MQ=14) ttGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCCGCTTCTACGGCCGATTTACGTGCATCgc > 5:1673505/1‑150 (MQ=11) ggccggcgccggCACGGCCCACCGCGGCTCCGCCGCCCGCT‑TTGCGCGGATCCACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGTGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc < 1:994599/141‑1 (MQ=11) gcgtgctggcgaaCGGGCAATAGCCGCTTCGAGGCCGGCT‑CTGCTCGGATCAAGCGGGCCCTCGGGATCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc < 7:389166/138‑1 (MQ=11) cGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGAGAGCGGCTGCGCGGGGGGGTTTGCGAGGGTCGaggg > 2:299061/1‑148 (MQ=11) cTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGTCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGTCCtgttg > 5:1323132/1‑151 (MQ=255) tagcgaCGGGCAACAGCAGCTGCGACGGCGGCTCTTCCGC‑GATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttg < 3:506820/144‑1 (MQ=11) tGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGATTTTCGAGGATCGACCTGTTGTTc > 6:1607669/1‑151 (MQ=255) ggCACGGGCACTACCGGCATCGCGTGCGGGG‑TGGCGCGTTGCGACCTGTGCTGCTGCGTGCTCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt < 1:1172127/151‑1 (MQ=14) gCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCTGCTTCGACGGCTGATTTTCGCGGATctgcatggggtgctg > 3:1424234/1‑137 (MQ=11) cGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGATTGCGCGCTTTGGCACGGTCAATAGCTGCTTCTACGGCAGATTTTCGAGGATCAACATGGAGTTCTGCtt > 6:281240/1‑151 (MQ=11) gcccaccccgCTTCGACGGCCGCT‑TTGCGCGGATCTAGCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGTTTGCGCGCTTTGGGATGTTCATTAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCg < 8:624835/142‑1 (MQ=11) gCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCCATAGCTGCTTCGACGGCTGGTTTGCGGGGATCTCCATGGTTTTCTGGTTcct > 3:204815/1‑150 (MQ=11) gCAATAGCGGATTAGTAGTCTTCT‑TTGCGGGGATCGTCGTTTGCTTCTGGTTACTGATTAGCATGTTGGTGATCAAGCTTTCTGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCg < 7:644968/151‑1 (MQ=9) aaTAGCGGCTTGGTGGGGGTCT‑GTGCGCGGATGGAGGTGGTCTTCAGGTGCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCa < 7:528729/151‑1 (MQ=14) aTAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCTACGGCGGATTTGCGTGGATCAGCATCTGTTTCTGGTTCCGGAt > 8:735069/1‑151 (MQ=11) aTAGCGGCTTCGACGGCGGCT‑TTGCGAGGATCGACCTGTTGTTATGGATAGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGAACGGGCAATAGCTGCTTCGACGGCGGGTTTTGGGGGGTCGAGCGGGGGGTCTGGTTcgggtt > 4:383168/1‑146 (MQ=11) tAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCTGCGTCGACGGCAGGTTTTCGCGGCTCCACCAGGTGTGCTGCGTCCGCagt > 5:1007467/1‑149 (MQ=11) aGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGCCCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCTGCTTAGACGGCCGATTTGCGAGGATCGGCATgtggttgtggttagggagtt > 6:1288370/1‑143 (MQ=14) aGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGATTTGGCCCGGGCAATAGCTGCTTCGACGGCAGATTTTCGAGGATCATCCTGGGGTTCTgcgtcgtgagtt > 2:1141698/1‑140 (MQ=11) gCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGGAGTATCCt > 3:1310466/1‑151 (MQ=14) ttCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGCCCTGGTGTTCTGGTTCCGCATTTGCCTGt > 7:1448041/1‑151 (MQ=255) ggcggcT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCAGGTTTACGAGGATCAGCAACTTTTGCTGGTTCCTGATTATCCTGATgatct > 2:1495707/1‑147 (MQ=11) cggcT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCCACGGCGGCTTTGCGAGGATCGACCTCTGTTTCTGCTTCCTCATTATCCTGTTGATCTTc > 8:851214/1‑151 (MQ=14) cggcT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCGGCATTAGCCTGTTGCTGTTc > 3:817414/1‑151 (MQ=255) gcT‑TTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCt > 1:1018669/1‑66 (MQ=255) cgcagaccgcgGCGCGACCGCTCCTGCTGGCACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCCGCTTCGACGGCTGCTTTGCGCGGATCGACCTCTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTcc < 7:346590/144‑1 (MQ=11) ttGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTCCGGGGATCGACCTCTTGTTCTGGTTCCGCAGTTGCCTGTTGGTGTTCCAGCt > 3:1459591/1‑151 (MQ=14) gcgcGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTg > 4:527473/1‑151 (MQ=40) cgcgGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCTGCTTCGACGGCGGGTTTGCGCGGATCGACATGTTTTTCTGCTTCCTGATTATGCTGATGATGTTCCAGATTgc > 3:914294/1‑151 (MQ=14) cgcgGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACATGTTGTTCTGGTTCCTCATTATCCTGTTGCTGTTCCAGATTgc > 1:356787/1‑151 (MQ=255) cgcgGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGCGGATCGACCTCTTGTTCTGGTTCCGCATTAGCCTGTTGCTCTTCCAGCTTgc > 3:1249641/1‑151 (MQ=255) cgcgGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTgc > 5:227936/1‑151 (MQ=255) agcgtttagACCTGTTCTTCTGGTTCAGCTTTATCATGTTGCTGTTACATCTTTGTTGCTTTGTCTCGGTCAATAGCTGCTTCTACTTCGGCTTTGTGCGTATCGACCTGTTGTTCTGTTTCCGCATTAGCCTGTTGCTGTTCCAGCTTg < 6:472813/142‑1 (MQ=2) cgGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTCCGCGGATCCCCCTCTTGTTCTGGTTCCGCATTTTGCTGTTGGTGTTCCAGCTTccgc > 1:88371/1‑151 (MQ=14) gATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTGCGGGGATCGACCTGGTGTTCTGGTTCCGCATTATCCTGTTGGTGTTCCAGCTTgcgggg > 4:217962/1‑148 (MQ=14) gATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCAGCTTTGCGAGGATCACCCACGTGTTCTGGTTCCTGATTATCCTGATGATCTTCCAGCTTgcgagg > 8:1565320/1‑148 (MQ=14) aTCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGGCATCTTGTTCTGGTTCCGCATTATCCTGTTGCTGTTCCAGCTTccgcgat > 1:1264461/1‑149 (MQ=14) aTCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTCTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCAACGGCAGATTTGCGAGGATCAACAACTTGTTCTGCTTCCTAATTATCCTGTAGATGTTCCAGAttcccaca > 6:778366/1‑144 (MQ=14) tCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCCATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGGCATCTTGTGCTGGTTCCGGATTTGCCTGTTGCTCTTCCAGATTGCGCGAtt > 7:430933/1‑151 (MQ=14) tCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATCGCCCTGTTGTTCTGGTTCCTCATTTTCCTGTTGCTGTTCCAGCTTGCGCGGtt > 1:462031/1‑151 (MQ=14) cGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCTGCTTCGACGGCAGCTTTTCGCGGATCGACCACATGTTCTGCTTCCTAATTTTCCTGAAGATCTTCCAGGTTCCCCGCtgt > 8:269872/1‑149 (MQ=2) cGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCTACGGCCGATTTGCGCGGATCGACATGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTCCGCGCttt > 5:1645538/1‑151 (MQ=14) atacgtGTTCTTCTGTGTGCTAATTAGCCTCTTTCTGTTTTAGCTTTCTCGAGTGTGTTCGGTTATTAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCtt < 8:1569500/145‑1 (MQ=2) gACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCTGCTTCGACGGCGGGTTTCCGGGGATCGCCCACTTGTTCTGGTTCGGCATTATCCTGTTGATGTTCCAGCttcccccgtttt > 3:704065/1‑141 (MQ=14) aCCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTATCCTGTTGCTGTTCCAGCTTGCGCGCTTTgg > 7:939289/1‑151 (MQ=255) aCCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTgg > 7:87113/1‑151 (MQ=40) aCCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGCCCTCTTGTTCTGCTTCCGCATTATCCTGTTGATGTTCCAGCTTGCGCGCTTTgg > 3:435632/1‑151 (MQ=14) ccTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGGCCTGGTGTTCTGGTTCCGCATTTGGCTGTTGGTGTTCCAGGTTGCGCGGttttgg > 2:51835/1‑148 (MQ=14) cTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCTGCTTCGACGGCGGGTTTGCGCGGATCGCCCTCTTTTTCTGGTTCCGGAGTATCCTGTTGTTGTTCCAGCTTGCCCGCTTTTgcc > 5:380084/1‑150 (MQ=14) cTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGgcg > 3:269874/1‑151 (MQ=40) tGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCAACGGCGGATTTGCGCGGATCGCCCTCGTGTTCTGGTTCCGGATTATCCTGTTGGTGTTCCTGCTTccgacagtggtcgg > 6:1506085/1‑140 (MQ=14) gTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGATTTCCGCGGATCGACCTCTTTTTCTGGTTCCTGATTATCCTGATGATCTTCCAGATTCCCAGCTTTGTcgcg > 6:444508/1‑151 (MQ=14) ttcttcTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCAACGGCAGCTTTACGAGGATCGCCCACTTTTTCTGGTTCCTGATTATCCTGTAGATCTTCCAGAttcccacattagaaccg > 4:1518296/1‑135 (MQ=9) tcttctGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCTGCTTCGACGGCGGGTTTGCGAGGATCAGCCTCTTGTTCTGGTTCCGGATTATCCTGTAGATGTTCCAGATTccgccgtttttcggctt > 6:980452/1‑138 (MQ=14) cttctGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCCCGGATCGCCCTGGTGTTCTGGGTCCGCATTAGCCTGTTGATGTTCCAGCTTCCCCGATTTGtcgccgt > 8:1002858/1‑147 (MQ=14) cttctGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCTATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTATCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCgggg > 7:205490/1‑150 (MQ=255) cttctGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTGCGCGGATCGCCATGTTGTTCTGGTTCCGCATTATCCTGATGCTGTTCCAGCTTGCGGCCTTTGGCGCggg > 1:1288445/1‑150 (MQ=14) cttctGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGAGTTGGCGCGGGc > 5:636311/1‑151 (MQ=255) cttctGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCttt < 6:1072517/46‑1 (MQ=9) | TGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCT‑TTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGC > DH1/2169573‑2169870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |