| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 613,597 | 0 | G | C | 25.8% | 395.2 / 49.9 | 266 | intergenic (+458/+565) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| Reads supporting (aligned to +/- strand): ref base G (75/92); new base C (6/52); total (86/180) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.07e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 271 total aligned reads displayed.
GCCCGTACTGAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAA > DH1/613447‑613745 | ccccGGACTGACCCCGGGTATGCTGGTTGAGCCAGCCCCATCTTGATTGCCTAGACCACACACTATACACCACAGAACGCGGCTTATCGGTCAGTTTCACCTGTTTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTACTTTTG‑GAGGGGCAg < 3:1007530/150‑1 (MQ=2) cccGTACTGAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGa < 8:1362074/151‑1 (MQ=255) ccGTACTGAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGaa < 6:513731/151‑1 (MQ=255) ccGTACTGAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTCGTTGTG‑TAGGGGCAgcc > 1:482160/1‑149 (MQ=255) cGTACTGAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGATTATCGGTCAGTTTCCCCTGATTTACGTAAAA‑ACACGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGaa > 3:167231/1‑150 (MQ=255) gTACTGAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAg < 6:730823/151‑1 (MQ=255) aCTGAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGaa > 7:1542674/1‑147 (MQ=255) aCTGAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGa < 3:1586983/150‑1 (MQ=255) aCTGAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGa < 2:1197986/150‑1 (MQ=255) cTGAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGCTCAGAATCACCTAATTTACGTAAAA‑ACCCCCTTAGTCGGTATTTTGCTTTTG‑GACTGGCAGAAAGatg > 4:755042/1‑151 (MQ=255) tGAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGatg > 5:1149463/1‑150 (MQ=255) gAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGatg‑a > 3:358158/1‑150 (MQ=255) aCCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACACAAGCCGCATGATCGGAAACGTTCACGTCATTTAGCTAAAA‑ACGCCCGACCACGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGatg‑aatg > 7:943915/1‑151 (MQ=25) cccGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGatg‑aatga < 1:1623600/151‑1 (MQ=255) gggttttggtgctTGAGCCTGTGTGCGGATGCTTGCCTAGATTATTGACTTTCCACGACAGAACGCGGCTTATCGGTCAGTTTCACCTGTTTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTTCTTTTG‑GAGGGGCAGAAAGATG‑AATGACt < 6:8009/142‑1 (MQ=14) cGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACt < 1:214538/151‑1 (MQ=255) ggTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGt < 2:868896/151‑1 (MQ=255) gTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTc < 7:1740237/151‑1 (MQ=255) tAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTcc > 5:1489152/1‑151 (MQ=255) aGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTcc < 2:512143/150‑1 (MQ=255) gctgctTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCacg < 7:545774/151‑1 (MQ=255) ctgctTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTAATCTGTCAGTTTCACCTGATTTACGTAAAA‑ACCAGCTTCAGCGGGATTTTAGATAAG‑AAGAGACAGAAAGAGG‑AATAACTGtaaacg > 6:1761152/1‑145 (MQ=25) ctgctTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACACAAACCCCAAAATCATACAGATACACAAGATTTACGTAAAA‑AACAGATTCGTAGGGTTTTTGATTTTG‑GAGGGGCAGAAAGATT‑AATGAATGTCCacg > 6:383013/1‑150 (MQ=16) ggctGGAGCGAGTGATCTATTGCTGGCGTAGATGAATGACTGTCCACGACAGAACCAGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑AGCCGCTTCGGCGGGTTTTTGGTTTTG‑GAGGCGCTGAAAGATG‑AATGACTGTCCacgac < 6:1558067/150‑1 (MQ=18) gctTGAGCGATTGTTCGATTGCTGGCCTAGATGTATGACTGTCCACGACTGTACTAGTGTTAGCGGTCAGTTGCTCCTGATTTACGGAAAA‑ACCCGCTTCTGCGGGTTTTTGCTTTTG‑GTGGCGCAGAAAGATG‑AATGACTGTCCacgag < 2:1081077/150‑2 (MQ=17) gctTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCacgac < 8:1843402/150‑1 (MQ=255) gagtGAGCGTGTGCGCGATTGCTGGCCTAGTTGAATGACTTTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAT‑ACGCGCTTCGGCGGGTTTTTGCTTTTG‑GAGTGGCAGAAAGATG‑AATGACTGTCCacgac < 6:110157/147‑1 (MQ=18) gttGAGCCAGTGAGCGTTTGCTGGCCTAGTTGAATGAGTGTCCACGACAGAACCCTGCTTATCGGTCAGTTTCACGTTATTTACGTAAAA‑ACCGGCTTGGGCGGTTTTTTGCTTTTG‑GAGGGGCAGAATGATG‑AATGACTGTCCACGAGGc < 4:325393/150‑1 (MQ=18) gttGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGc < 5:1013611/150‑1 (MQ=255) ttGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGCGGGTTTGCTGTTG‑CGGCTGCAGAAACCTG‑ACTCCCTGTCCACGCCGCt > 1:955236/1‑151 (MQ=25) tGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCGCATGCGTTACGTAAAA‑ACACGCGTCGGACGGTATTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACCCt > 3:994327/1‑150 (MQ=21) tGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGc < 7:1187325/149‑1 (MQ=255) gAGCCAGTGTTCGATTGCTGGCCTACTTTAATCACTTCCCCCGACATAACCCGGCTTTTCGGTCTGTTTCACGTGATTTACTTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑TTGGGGCAGAAACATG‑AATGACTGTCCACGACGCtat < 8:921311/151‑1 (MQ=17) gAGCCAGTGAGCGATGGCTGGCCTAGATTAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGGGGGTTTTTGCTTTTG‑GAGGGGCATAAAGATG‑AATGACTGTCCACGACGCta < 7:1645419/150‑1 (MQ=255) aGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACACAACACCCAATATAAATCAGATTCAAATAATTTACGTAAAA‑ACAAGCTTCTTAAGGTTTTTGCTTTTG‑TAGGTGCACAAAGATT‑AATTAAAATAAACGACACTATAccc > 4:639416/1‑150 (MQ=255) gTGAGCTATTGCGGGCCTAGATGAATGACTGCCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGCTATACCCaa < 2:392311/151‑1 (MQ=255) ggagagaTTGCTGGCCTATATTAATGACTGGCCACGACAGAACCCGGCTTATCGGTCATTTTCACCTGATTTAGTTAAAA‑ACCCGCTTCGGGGGTTTTTTGTTTTTG‑TAGGTGAACAAATATG‑AATTACTGTCCACGACGCTATACCCaaa < 2:578808/150‑1 (MQ=255) gAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACACAAACCCCCTTATCGGAAACTATAACATTATTTACATAAAA‑AAAAGCTTAGTCGAGATTTTACTTTTG‑GAGGTTAAGAAAAATA‑AATGACTGTCCACGACACTATACCCa > 8:1088565/1‑148 (MQ=12) cGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTGCACCTGATTTACTTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGCTATACCCAaaagaa < 4:193861/151‑1 (MQ=255) cGATTGCTGGCCTAGATGAATGACTGTCCACGACACAAAACCCAATATAAATCAATATCACCTGATTAAAGTAAAA‑AAACACTTATAAGATTTTTTTATATTT‑CAGTGGAAGAAAGATG‑AATTAATATAAAAGACACTATACCCaaaaca > 4:1170050/1‑148 (MQ=255) gtgcgggcatatctgaatcaCTGTCCACGACACAACCCGGGTTTGCGGTCTTTTTCACCTGATTTACTTAAAA‑ACCCGCTGCGGGGGGTTTTTGGTTTTG‑GAGGGGCACAAATATT‑AATGACTGCCCACGACGCTATACCCAaaagaaag < 5:714958/137‑1 (MQ=255) gtGCTGGCGCAGAGCACTGACTCGCCACCACAGACCCCGGCTTATCGGTCAGTTTCACCTGATTTACTTTAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GCGGGGCAGAAATATT‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGc < 2:176383/150‑1 (MQ=14) tGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACAAGCTTAGGCGGCTGTTTTCTTTTG‑CAGTCGCAGATACATG‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCg > 5:423763/1‑151 (MQ=18) cTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTACTTTTG‑GAGGGACATAAAAATA‑AATTACTGTACACAAAGAtataaaaaaaaaaaataga > 2:1380664/1‑135 (MQ=17) ggcttagtttaagtaCTGTCCAGTACAGAACGCGGGTTATGTGTCAGTTTCACCTGATTTACTTAAAA‑ACCCGCTTGGGGGGGTTTTTGTTTTTG‑GTGGGGCAGAAATATT‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCt < 8:625751/136‑1 (MQ=14) ggcgttgATGAATGCCTGGCCACGACTTAAGCGGGCTTAGCGGGCAGTTGCACCTGATTTCCGTAAAA‑ACCCGCTTGGGGGGGTTTTTGGTTTTG‑GAGGGGCAGAAAGATT‑ATTGACTGCCCACGACGCTATACCCAAAAGAAAGCGGCtt < 2:144530/145‑1 (MQ=14) ggCCTAGATTAATGACTGTCCACGACAGAACCCGGCTTATGGGGCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCtt < 1:805531/151‑1 (MQ=255) ggCCTACTTTAACGACTCGCCACCACACAACCCGGCTTCTGGGTCAGTTTCACCTGATTTACGTAAAA‑CCCCGCGTCGGCGGGTTTTTGTTTTTG‑TTGGGGCACAAAGATC‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCtt < 6:1292967/151‑1 (MQ=14) ccaagagGAATGACTGGCCACCACAGAACCCGGCTTATCGGACAGTTTCACCTTATTTACGTAAAA‑ACCCGCTTCGGCGGTTTTTTGATTTTG‑GAGGGTCACAAAGATG‑AATTACGGTCCACGACGCTATACCCAAAAGAAAGCGGCTTAt < 4:1766898/148‑1 (MQ=17) cTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTCCTTTTG‑GAGGGGCAGAAAGATG‑AGTAACTGACCACGACGCAACACCCGAAAGAAAGCGGCTTAtg > 7:74103/1‑150 (MQ=18) aagagGAATGACGGGCCACGACAGACCCCGGCTTAGCGGTCAGTTTCACCTGATTTACTTAAAA‑ACCCGCTTCGGCGGTTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGGCCACGACGCTATACCCAAAAGAAAGCGGCTTATCg < 1:341106/150‑1 (MQ=14) ttatcaatgaCTTTCCACGACAGAACCGGGATTATCGGTCAGTTTCACCTGATTTAGTTAAAA‑CCCCGCTTCGGCGGTTTTTTGCTTTTG‑GAGGGGCAGAAAGATT‑AATGAGTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCg < 3:828510/145‑1 (MQ=17) ttttttttactttacACTACAGAACTCTGCTTATCTGTCATTTTCACCTGTTTTACTTAAAA‑ACCTGTTTCGGGTTGTTTTTGTTTTTG‑TTGGTGTTTAAATATT‑AATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCgg < 6:1489784/136‑1 (MQ=2) tgaatgaCTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCTCGGCACTAAACCCCAAAGAAATCCGCTTATccctc > 3:1482437/1‑146 (MQ=17) gaatgaCTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGGGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCAACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTc > 1:1370396/1‑149 (MQ=255) gaatgaCTGTCCACCACAGAACCCGTCTTATCGGTCATTTTCACCTGATTTACTTAAAA‑ACCCGCTTCGGCGGGTTTTTGGTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCa < 4:848414/150‑1 (MQ=255) cgcgggcactcaaGATCCCGGCTTTTCTGTCATTTTCACCTCATTTACGTAAAA‑CCCCGCTTGTGCGGTTTTTTGCTTTTG‑GTGGGGCCTAAACATG‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCa < 5:154938/139‑1 (MQ=11) cggcccaccaCAGAACCCGGCTTATCGGTCAGTTGCACCTGATTTACGTAAAA‑CCCCGCTGCGGCGGGTTTTTGCTTTTG‑GCGGGGCACAAAGATG‑AATGACTGGCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCAc < 3:1202002/147‑1 (MQ=14) cctgccACGACTGAACCCGGCTTATCGGGAAGTTGCAGGTGATTT‑CGTAAAACCCCCGCTGCGGCGGTTTTTTGGTTTTG‑GTGGCGCCCAATCATG‑ATTGACTCGCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCAc < 1:1723760/147‑1 (MQ=9) cTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCtt > 5:1586740/1‑136 (MQ=255) tCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCacgaca > 5:1433391/1‑109 (MQ=255) ccacacAACCCGGCTTAGCGGTCATTTTCACCTCAGTCACGTCAAA‑CCCCCCGCCGGGGGGTTTTGCCTTGTG‑TTCTGAC‑TTAAGCTGTACGGACGTGCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGtttt < 3:1421135/149‑1 (MQ=2) aCATAACCCGGCTTATGGGGCATTTGCCCGTGATTTCCTTAAAA‑CCCCGCTTCGGGGGGTTTTTGTTTTTG‑TTGGGGCACAATGATG‑AATGACTGGCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGttt < 1:596301/149‑1 (MQ=14) cAGAACCCGGATTATCGCGAAGTTTCACCTGATTTCCGTAAAA‑ACCCGCTGCGGCGGTTTTTTGGTTTTG‑GCGGGGCCCAAACATG‑AATGACTGGCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACg < 5:823979/151‑1 (MQ=14) acaaCCCGGCTTATGGGTCATTTTCACCTGATTTACGAAAAA‑CCCGGCTTCGGCGGGTTTTTGTTTTTG‑CTGGTGCACAATTTTG‑AAGGACTTTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGt < 2:1756131/149‑1 (MQ=14) aGAACCCGGCTTATGGGGAAGTTTCACCTGATTTACGTAAAA‑CCCCGCTGCGGCGGGTTTTTGCTTTTG‑TAGGGGCCCAAAGATG‑AATGACTGGCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGt < 3:1518664/151‑1 (MQ=14) aCCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACCCTATACCCAaaagaa > 1:1047699/1‑114 (MQ=25) cccGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCTGTGTGACGTGCTGTACGTaca > 7:591389/1‑148 (MQ=11) ccggggtctcgtgacgTTTCACCTGATTTAGGAAAAA‑CCCCGCTTCGGCGGGTTTTTGGTTTTG‑CCGGGGCGCCAAGATG‑AAGGCCTGGCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTaaaaa < 1:772875/136‑1 (MQ=11) ccGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGa > 5:65000/1‑78 (MQ=35) ccGGCTTATCGGGCAGTTTCACCTGATTTACTTAACA‑CCCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAACGATG‑ATTGACTCTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTaaaaa < 3:1094717/151‑1 (MQ=11) ggCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATAGATCAGAATCGCCTCGTTTACGTAAAAAc > 6:982772/1‑150 (MQ=11) gCTAATCGGCAAGTTGCCCGTGATTACCGTACAA‑CCGCTCTGCGGCGGGTTTTTGCTTTTG‑CCGGGGCCCAATCTTG‑ATTGACTTGCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAAccc < 4:462329/151‑1 (MQ=2) aTCGGTAATTTTCACGTGATTTACTTAAAA‑ACCCTCTTCGGCGGGTTTTTGGTTTTG‑CAGGGGCTCAAATATT‑AATGACTTTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCtt < 3:132893/151‑1 (MQ=11) tCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCCGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACCCTATACCCAAAAGAAAGCGGCTAAAACGTAAGATACACCTGATTTAAATaaaaaaaaacat > 8:1245189/1‑143 (MQ=11) attttccggtGATTTAGTTAAAA‑ACGTGCTGCTGCGGGTTTTTGCTTTTG‑CTGGGGTCTAATCATG‑ATTGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCggg < 6:142790/142‑1 (MQ=11) attcccACCTGTTTTAGCTAAAC‑ACCTTCTTCTGCGGTTTTTTGTTTTTG‑TTGGGGTTAAATTTTG‑ATTGACTTTCCACGACGCTATACACAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCggg < 8:1541549/146‑1 (MQ=2) aGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCGCGTGGATTACGTAAAAACTCGCCTCGCCggg > 3:424786/1‑151 (MQ=11) gTTTCCCCTGATTGCCGTACAA‑ACCCGCTGCGGCGGGTTTTTGTTTTTG‑GCGGCGCCGAACGATG‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGt < 3:1684302/151‑1 (MQ=11) ttCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGACAGATTAACAGGGGTAACCTTAAAACCAGCCACTGCGGGgtt > 5:283684/1‑151 (MQ=11) tCACCTGATTTACTTAAAA‑ACCGGCTGCGGGGGGTTTTTGGTTTTG‑GCGGCGCCCAAACATG‑AATGACTGGCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGttt < 8:692632/150‑1 (MQ=11) cACTTGATTTAGTTATAA‑ACGCTCTGCTGCGGGTTTTTGGTTTTG‑TTGGTGCTTAATTTTG‑ATTGACTTTCCACTACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGttttt < 4:1416467/151‑1 (MQ=2) cTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTAGCTTTTG‑GAGGGGGAGAAAGATG‑AATGACTGTCCACGACCAGTTACCCAAAAGAAAGCGGCTTATCGGTCAGTTTGACCTGATTTACCTAATAACCCGTTGCGGGGCGTTTTTgat > 5:1767530/1‑149 (MQ=11) aTTTACGTTAAT‑ACGAGCTGCGGCGGGTTTTTGTTTTTG‑TTGGTGTTCAATTATG‑ATTGACTTTCCACGTCGCTATACACAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCtttt < 4:358933/151‑1 (MQ=11) ttACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTGACCTGGTGTACGTAATAACCCGCTGCGGCGGGTTTGTGCTTGTgg > 1:1216826/1‑151 (MQ=11) aCGTAAAA‑CCCCGCTTCGGCGGGTTTTTGTTTTTG‑CTGGGGATTAAAGATG‑AATTCCTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGa < 8:224430/150‑1 (MQ=11) cgaaaac‑aCCCGCTGCGGCGGGTTTTTGGTTTTG‑GAGGCGCACAACGATC‑AATGACTCGCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAgg < 7:309908/148‑1 (MQ=11) cctaacacccgcGCTGCTGCGGGTTTTTGTTTTTG‑CCGGGGACACACCTTG‑CATGCCTCTCCACGACTCTCTACCCAAAAGAACGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAg < 1:1173023/140‑1 (MQ=2) taata‑aCCGTCTGCGCCGGGTTTTTGTTTTTG‑TCGGTGCTTTAATTTG‑ATTGCCTTTCTACTAGGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAggg < 6:1040363/150‑1 (MQ=2) aa‑aCCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTGACCTGTTTTACGTAAAAACCCGGTTCGGCGGGTTTGAGATTTTTGAGTGGCat > 8:600221/1‑150 (MQ=11) a‑aCCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGAAGAAAGATG‑AAGGACTGTCCAAGACGCTATAACAAAAAGAAAGAGGCTTATCGGTCAGTTTAACCTTATTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAgggggcgg > 8:52380/1‑147 (MQ=11) ccgtacTTCGGGGGGTTTTTGTTTTTGCGGGGGGCA‑AATCTTG‑ATTGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAgta < 7:1338982/146‑3 (MQ=11) cggctgccgcggGTTTTTGGTTTTG‑GGGGGGCCCAAACATG‑CATGACTCGCCACGACGCTCTACCCAACAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAg < 5:457934/143‑1 (MQ=11) gtcTTCTGGGGGTTTTTGTTTTTG‑TCGGTGCTTTAACTTG‑ATTGACTTTCCTCTTCGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGa < 4:1686385/149‑1 (MQ=11) cGCTGCGGCGGGTTTTGCCTGTTG‑CTCGCGCCCAACGATG‑AATGACTCGCCCCGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGa < 5:198735/151‑1 (MQ=11) gCTTCGGCGGGTTTTTGCTTTTT‑GAGGGGCATAAAGATG‑AAAGACTTTCCCCGACCCTATAACCAAAAGAAAGAGGCTTATCGCTCACTTTTACCTGCTGTACGTAAAAACCCGATTCGGCGGGTTTGAGCTTGTGGAGTGGGAGaaata > 7:76190/1‑148 (MQ=2) gctgcggGTTTTTGCTTTTG‑TAGGTGGACAATTATG‑AATGACTCTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGatg < 4:1445707/146‑1 (MQ=11) ggcggGTTTTTGGTTTTG‑ATGGCGCCCAACTTTG‑CTTGACTCGCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGatgaatg < 5:1187795/151‑1 (MQ=11) gtttttgtttttG‑CGGGGGAAGAACATTG‑ATTGCCTTGCCACGACGCTATCCCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGt < 7:363283/151‑1 (MQ=11) tttGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTGACCTGATTTACGTAAAAAACCGGTTCGGCGGGTTTTAGATTTTTGAGTGGGATAAatatcagccggtttcgt > 3:18046/1‑138 (MQ=11) | GCCCGTACTGAACCCGGGTAGGCTGCTTGAGCCAGTGAGCGATTGCTGGCCTAGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAA‑ACCCGCTTCGGCGGGTTTTTGCTTTTG‑GAGGGGCAGAAAGATG‑AATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAA > DH1/613447‑613745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |