| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 2,169,577 | 0 | T | G | 33.0% | 180.9 / 71.6 | 221 | R661R (CGA→CGC) | rsxC | electron transporter RsxC |
| Reads supporting (aligned to +/- strand): ref base T (48/96); new base G (12/59); total (63/158) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.49e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 225 total aligned reads displayed.
CTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCT > DH1/2169427‑2169724 | ggtcttctGGGTCCGGAAGACCCTGTTGCTGGTCCCCCTTGGGGGCCTTTGCGCGTGCAATAGCCGCGTCCACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCt < 2:1320565/147‑1 (MQ=17) gTTCTTCTTGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCATGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCt < 4:499105/149‑1 (MQ=255) tcttctGGTACCGCTTTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCgg < 2:635410/150‑1 (MQ=255) cttctGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGTCGCGTTCAATATCCGCTTAGACGGAAGCTTTGCTCGGATCAACCTGTTCTTCTGTATAAGAATTAGCCTGTTGCTGT‑TCCCGTTTGCGGGGTGTGGCGCgggg > 8:1025013/1‑150 (MQ=17) tctGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATAGAACGGTTCATCTCCCTGCTGATCAGCAGGGTCGGCT‑GCGAGTGTGCGCGCTTTGGCTCGGGCat > 7:860112/1‑150 (MQ=9) gggaCCGCATTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTTGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAg < 8:878525/148‑1 (MQ=255) gggaCCGCATGAGCCTGGTGCTGTGCCCGCTTGCGGGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAg < 1:455395/148‑1 (MQ=21) ggTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAg < 1:1483299/151‑1 (MQ=255) ggTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAAt < 3:1241154/149‑1 (MQ=255) aCCGCATTAGCCTGGTGCTGTGCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCgg < 5:16804/151‑1 (MQ=255) ccGCATTAGCCTGCTGCTGTTCCAGCTTGCGGGCGTTAGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGc < 1:1045364/151‑1 (MQ=255) gCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGGTTTGCGCGGATCAACCTGTTATTCTGCCTCGTCATAACGCGCTTCCGTT‑TCCAGATTGCGCGCTTTGGCGCGGGCTATAGCTGCtt > 7:1261739/1‑151 (MQ=14) gaTTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTc < 8:765666/150‑1 (MQ=255) aTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGGAGGTGTGGCTCCGCAGTATCCCG‑TGCAGTGACGCCTTTGCGGGGGTTGGGTCGGGCAATAGCGGCTTCg > 5:489207/1‑151 (MQ=9) aTTAGCCTGTTGCTGGTCCCGCTTGCGGGCGTGGGCGCGGGCAATAGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTGCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg < 5:1380633/151‑1 (MQ=21) ttAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCCGATTTGCGCGGATCAGCCTGTTCTTCTGGCTCGGCATTAGCCGGTTGCTGT‑TCCCGGTTGCGAGCTTTGGCTCGGGCAATCGCGGCTTCgc > 3:269757/1‑150 (MQ=17) aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCGATAGCGGCTTCGACGGCAGGAGATCGCGGGACCACCGGTGGTACGTGCTCGCCATGAGCCGGTTGGTGT‑TCCCGGTTGCGCGCTTTGGCTCGGGCAATAGCGGCttgggcg > 1:481101/1‑146 (MQ=9) ccTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGATCCGCATTAGCCTGTTGCTGT‑TCCAGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc > 8:107750/1‑151 (MQ=255) ccccccccgccccgCTTCCGAGCTTTGGCCCGTGCAATAGCTTTTTCTAATTCTTCTTTGCGCGGATCGACCTGTTCTTATTGCTAATCATTATTCTGTTGCTGG‑TCGCTCTTGCGAGCTTTGGCTCGTGCAATAGCGGCTTCGAcggcgg < 2:1819762/138‑1 (MQ=2) ggtGCTGTTCCAGCTTGCGTGCGTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACggcggc < 4:1695093/149‑1 (MQ=255) gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACggcggc < 6:1817932/151‑1 (MQ=255) gCTGTTCGAGCTTGCTTGCGTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCttt < 1:1602331/151‑1 (MQ=255) gCTGTTCCTGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCtt < 4:1506108/150‑1 (MQ=255) gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGAGCGCTTTGGCACGGGCAATAGCGGCTTCGACggcggcggt > 7:393598/1‑148 (MQ=255) gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCGGTTGGTCTGGCTCGGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCGTCgcgggggggtgg > 7:732717/1‑140 (MQ=17) gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTCCGCGGATCAACATGTTGTTCTGGGTCCTGATTATCCTGTTGGTGT‑TCCTGTTTGCGCCGTTTTGGGCGTTAAATAGCTGCTTCTAcggcactttt > 7:332884/1‑145 (MQ=9) gCTGTTCCAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt < 7:235680/151‑1 (MQ=255) aGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTCTTGTGGCTACGATGTAACCTCTTACGGT‑TAGTGTTTGCGGGGTTTGGGGCGGGGAGTAGCGGGTTCGACGGCGGCTTTGCGCGGAt > 5:380060/1‑151 (MQ=9) aGCTTGAGTGCGTTGGCGCGTGCAATAGCCGCGGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGAt < 4:198970/151‑1 (MQ=17) gCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCAGATTGCGCGCTTAGACACGAGCAATATCGTCTTCGCCTACGGAGTTGAGCGGAt > 4:1214655/1‑150 (MQ=11) cctcccccccctgcgcgcGGGCAATAGCGTCTTTTACTTCAGCTTTGCTCGTATCATCGTGTTCTTCTGGTTCCGAATTTGCCTGTTGCTGT‑TGCTGTTTGGTTGGTTTCGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATc < 6:1177785/137‑1 (MQ=0) ccTTGCGTGCTGGGGCGCGGGCAATAGCCGCGGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑GCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 5:525974/150‑1 (MQ=17) cTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTCTTGAGGAACCGCAATCGGCTGAAGCCGA‑TACAGTTAGCGCGCTTTGGCTCGGGCCCGTGCGGCGTCGACGGCCCCTTTGCGCGGAtgg > 1:556100/1‑149 (MQ=255) tggggcctttgcgcGTGCAATAGCCGCGGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc < 4:657269/140‑1 (MQ=14) gcttGCTTGCGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAcc < 7:603222/148‑1 (MQ=255) cGTGCTTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAcc < 6:259793/150‑1 (MQ=255) gccttGGCGCGGGCAATAGCCGCTGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGT‑GCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt < 3:113826/148‑1 (MQ=14) gcatttgcgcGTGCACTAGCCGCGGCCACCGCCGCTTTGCGCGGATCAACCTGGTCTTCTGGCTCCGCATTAGCCTGTTGCTGG‑TCCCGGTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt < 5:1033744/145‑1 (MQ=14) gCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTCATCTGGCTAGACCTTAGGGGGTTGATGT‑TCGCGTTTGAGATCTTTAGCTCGGGCTATAGCGGCTTAGAATTCGGATATGCGCGGATCGAGCtggt > 6:982829/1‑149 (MQ=255) cTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTGGTCAGGCTCCGCCGTATCCACTGGCGGA‑ACGCCGTTGAGGGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCggggctggcccggggg > 7:253873/1‑139 (MQ=9) ttcgcgcGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCGGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttgt < 8:1691374/147‑1 (MQ=255) gcgcGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGGTCTTCTGGCTCCGCATTAGCCGGGTGCTGG‑TCGCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg < 7:130187/151‑1 (MQ=17) cgcgTGCAATAGCCGCGTCTACTGCAGCTTTGCGCTGATCAACCTGTTCTTCTGGCTCCGCTTTAGCCGGTTGCTGT‑TCGCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTgg < 2:1745761/151‑1 (MQ=17) gcgTGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGGTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGc < 7:942538/151‑1 (MQ=255) gTGCAATATCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCCACGGCTGCTTTGCGGGGATCTGCCTGGGGTTCTGGGTc > 3:876593/1‑151 (MQ=18) gCAATAGCCTCTGATACTGCAGCTTTTCTAGGATTAACCTGTTCTTCTGGCTCCGCATTAGCCTTTTGCTGT‑TCCCGTTTGAGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCg < 6:880083/150‑1 (MQ=14) cgaGCCGCGGCCACGGCAGCTTTGCTATTATCAACCTGTTCTTCTGGATCCTCATTAGCAGTTTGCTTT‑TCCCTTTTTCGCTCTTTGTCGCTGTCAATAGCTGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAt < 8:1116001/149‑1 (MQ=9) aGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa < 5:503300/151‑1 (MQ=255) aGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTATGGCTCCGCATTAGCCTGTTGCTGT‑TCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa < 6:1440861/151‑1 (MQ=255) ggCTTCTACTGGAGGTTTGCGCGTATCTACCTGTTATTCTTGCTCCTCATTATCCTGTTGCTGG‑TCGCGTTTGCTGGCTTTGGCGCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGcc < 8:499164/150‑1 (MQ=14) cgcgTCTACTGCAGCTTTGCGCTGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCCGTTTGCGGGCTTTTGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGcc < 4:1743350/151‑1 (MQ=14) gtgatactgCAGCTTTGCGCGGATTAACCTGTTCTTCTGGCTCCGCATTAGCCGTTTGCTGT‑TCCCGTTTGCGGGCTTTCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTg < 6:604377/143‑1 (MQ=17) ggtctaCGGCAGCTTTGCGCTGATCAACGTGCTCTTCTGGCTCCGCATTAGCCTGGTGCTGT‑TCGCGTTTTCTCGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTg < 3:1325925/146‑1 (MQ=14) tctactgCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGt < 8:55136/144‑1 (MQ=255) tccactgCAGCTGTTGGCGTAGCAACCTGGTCTTCTGGCTCCGCATTAGCCTGTTGCTGG‑TCCGGTTTGCTCGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTg < 5:294601/143‑1 (MQ=14) gcGACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGT‑TCCCGGTTGCTCGATTTCGCACGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGtt < 7:28941/150‑1 (MQ=11) ccaCGTCAGCTTTGCTCGGATCAACATGTTCTTCTGGCTCGGCTTTAGCCTTTTGCTGT‑TCGGGTTTGCTGGCTTTTGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg < 4:154871/149‑1 (MQ=14) cGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg < 7:1452479/151‑1 (MQ=255) actggaGCTTTGCGCTGATGAACCTGCTCTTCTGGCTCCGCATTAGCCTGGTGCTGG‑TCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc < 7:1808428/145‑1 (MQ=14) actgCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc < 8:56646/147‑1 (MQ=255) accggagcgatGCGCGTTTCAACCTCTTCTTCGGCCTCGGGATGAGCCTGATGCTGG‑GCCCCTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCt < 3:799258/141‑1 (MQ=9) ggCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCAGATTGCGCGCTTTGGATATCGCAATAGCGTCTTCGACGGATACTTTGCTAAGATATAACTGTTGTTCTGGGTCCGCCTTatcattttaatgt > 8:63853/1‑139 (MQ=2) ccgCTTTGCGCGGAGGAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGT‑GCCCGTTTGCGGGCTTGGGCGCGGGCAATAGCGGCTTCGACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTc < 2:1484433/149‑1 (MQ=14) cAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCAGGTTGCGCGCTTTGGCTCGGGCAATATCCGCTGCGACCGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGATCCGCATTAGCCTGTTGCTGttg > 1:618841/1‑150 (MQ=11) gctttgcgttgtgccaCCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCGGGTTTGTTGGCGTTTGCTCGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa < 6:385633/136‑1 (MQ=14) gcgcTGATCAACCTGCTCTTCTGGCTCGGCAATAGCCTGGTGCTGT‑TCGCGTTTTCGCGCGTTGGCGCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt < 5:1831154/150‑1 (MQ=14) gcgGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGT‑TCGCGTTTGCGCGCGTTGGCGCGGGCAATAGCGGCTGCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCg < 5:715779/151‑1 (MQ=14) cgGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGAGGATCCGCCAGGGTTGCTGGGTCGGCAGTATGCTGTAGATGTGCCAGGttccct > 1:1705623/1‑147 (MQ=14) tagcAACCTGGACTTCTGGCTCGGCAAGACCCTGCTGCTGG‑GCCGCTTTGCTCGCGTTCGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGt < 5:658079/146‑1 (MQ=11) agggaCCTGGTGTTCTGGCTCCTCTTTAGCCTGGTGCTGT‑TCCCGTTTTCGCGCTTGCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCCGTTCCAGCTTGCGTGCt < 1:91729/147‑1 (MQ=14) cgaccgcgccgccgcgCTCCGCATTAGCCGGTTGCTGT‑TCCAGTTTGCGCGCTTTGGCACGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTGGTGCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCttt < 1:336812/136‑1 (MQ=11) gTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg > 3:1538366/1‑83 (MQ=255) ttctGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCGATAGCGGCTTCCACGGCGGTTTTACGGGGATCCGCATCTGTTTCTGCGTCGGTAGTATCCTGTTGCTCTTCCTGATTCCGTgagtattgcggtta > 1:965023/1‑137 (MQ=255) ggCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCGATAGCTGCTTCCACGGCAGTTTTacgtg > 3:702468/1‑77 (MQ=255) ccGGATGAGCCTGGTGCTGT‑GCCAGTTTGCGCGCGTTGGCGCGGGCAATAGCCGCGGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCgg < 1:832480/150‑1 (MQ=14) ccGCATTAGCCGGTTGCTGT‑TCCCGATTGCGCGCTTTGGCTCGGGCGATAGCAGATGCGAAGCGCGCTATGCTCGCCTCCACGCACTCCGCAGCATCGGCATTAGCCTGTTGCTGTTGCAGCTTTAAAGCTTTGgggcgggcgctggcggg > 3:1343447/1‑142 (MQ=255) ccGCATTAGCCGGGTGCTGT‑TCCCGGTTGCGCGCTTTGGCGCGGGCACTCGCGCCTTCGCCGGCGGCGTGGCGCGGACCCACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGc < 7:460137/151‑1 (MQ=14) ccGCATGAGCCTGGTGCTGG‑GCCCGTTTGCTGGCGTTCGCGCGGGCAATAGCGGCGGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCgg < 7:921134/150‑1 (MQ=14) ggtttaccctggtGCTGG‑TCGGGTTTGAGGGCGTGGGCGCGGGCAATAGCGGCGTCTACTGCGGCTTTGCGCGGATCTACCTGTTCTTCTGGGTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt < 6:159142/139‑1 (MQ=11) gCACTAGCCGGCTGCTGT‑TCCCGGTTGCGCGCTTTGGCTCGTGCAATAGCGGCTTCGACGGCGTCTTTTAGCGTATCGACCTGTTCTTCTGGCTCGGCTTTAGCGTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt < 8:731919/151‑1 (MQ=14) cctcgCCGGATGCTGG‑GCCCGTTTGCTGGCCTGCGCGCGGGCAATAGCCGCTTCCACGGCCGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg < 1:1644675/147‑1 (MQ=11) agccttctGCTGG‑TCGCCTTTGATCGCGTTCGCGCGGGCAATAGCGGCTTCCACTGCCGCTTTGCGCGGTTCCACCTGTTCTTCTGGGTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc < 5:966814/143‑1 (MQ=1) aGCCTGTTGCTGG‑TCGCGTTTGCGCGCTTTCGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg < 8:1563390/151‑1 (MQ=255) gctggtGCTGG‑TCGCGTTTGCTGGCTTTTGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 8:1594075/146‑1 (MQ=14) cctgTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGTGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 8:709571/148‑1 (MQ=255) ggtGCTGT‑TCCGGTTTGCGGGCTTTGGCGCGGGCAATAGCCGCGTCCACTGCCGCNTTGCGCGGATCNNCCTGTTNTTCTGGCTCGGCATTNNCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggcg < 2:593252/147‑1 (MQ=14) ggtGCTGT‑TCCCGTGTTGGGGCCTTGGCGCGGGCAATAGCCGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc < 1:1388222/149‑1 (MQ=14) cccgT‑TCCCGCTTGCGCGCTTTTTCTTTTTCAATAGCGGCTTCGACGGCAGATTTGCTCTTATCTAACTGTTGTTCTGGATCTGGATTAGCTTGTTTCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt < 6:510113/148‑1 (MQ=9) gctgctccggagtGCGTGCTGTGGCGCGGGCACTTGCGGCGTGGACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt < 7:229792/139‑1 (MQ=11) gggcccGTTTGCGGGCGTGGGCGCGGGCAATAGCCGCTTCGACGGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTg < 1:117197/146‑1 (MQ=14) ggcgcGTTTGCGCGCGTGGGCGCGGGCAATAGCCGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc < 7:1142124/147‑1 (MQ=14) gTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGCCCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCTGCTTCCACGGCTGCTTTCCGGGGATc > 3:894281/1‑151 (MQ=14) cgtttctggcTTTCGCGCGGGCAATAGCCGCGGCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 8:1801430/143‑1 (MQ=14) cgtGCGCGCTGGGGCTCGTGCAATAGCCGCGGCGACGGCGGCGTTGCGCGGATCGCCGTGGTGTCCGGCCTGCGCATTAGCGCGCTGCTGTTCGAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg < 1:1462635/149‑1 (MQ=9) tctcgcgtgagCTCGGTCAATAGCCGCTTCAACTTCCGCTTTGCGCGGATCTACCTGTTGTTCTGGATCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc < 2:71097/140‑1 (MQ=14) cgcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGACCTGTTGTTCTGGGTCGGGATTAGCCTGTTGCTGTTCCAGCTTGCGTCCTTTGTCCCGTGCAATAGCTGCGTCTACGGCACGTTTGCGAGGATccccctct > 3:382025/1‑144 (MQ=11) gcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGATTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCGCGGGCGATAGCGGCTTCGAGCGCGGGGGTGCGCGGGTCGGccgggg > 5:1274541/1‑147 (MQ=11) gcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGAATATCGCGAAACCAGCTGTTATTCTAAGTCGGAATAAGAATGTTGATCTTACAGATTTCGAGCTTTGAATAAGAAAATAGCTGCTTCGACGGCGGGTGTGCgggggtggggcgtgg > 2:755363/1‑140 (MQ=255) tGGCGCGGGCAATAGCCGCGTCCACTGCGGCTTTGCGCGTATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGttctt < 3:248508/150‑1 (MQ=14) ggCTCGGGCAATAGCGGCTGCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCGTTCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTtcttct < 5:1245444/151‑1 (MQ=14) | CTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGT‑TCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCT > DH1/2169427‑2169724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |