| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | DH1 | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 3,668,919 | 1 | . | T | 95.5% | 1903.6 / 63.2 | 539 | pseudogene (358/455 nt) | lpxA | hydroxymyristoyl‑ACP dehydratase |
| Reads supporting (aligned to +/- strand): ref base . (15/9); new base T (269/244); total (286/253) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 584 total aligned reads displayed.
CCCTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑TTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCTGT > DH1/3668769‑3669064 | ccTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t < 7:1016961/151‑1 (MQ=255) ctTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑tt < 7:1157551/149‑1 (MQ=255) ttCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑ttt‑tt > 4:794675/1‑151 (MQ=255) tCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑ttt‑ttt > 6:1738491/1‑150 (MQ=255) tCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑ttt < 3:1764957/148‑1 (MQ=255) tCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑ttt < 5:1960019/148‑1 (MQ=255) ccACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑ttt‑tttc > 5:296124/1‑149 (MQ=255) aTGGCTGTTGGATGCACAAAGGAGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAg < 2:2143067/151‑1 (MQ=255) ggCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTg < 1:791650/151‑1 (MQ=255) cGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGATCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGAc > 3:1925536/1‑151 (MQ=255) ggTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACt > 4:991076/1‑151 (MQ=255) ggATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGATCACACATCATCGTTGCTTCGCAAACTACTTTACCATCAACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGA‑GTTTT‑TTCGAAAGTGACTTcc < 1:266534/150‑1 (MQ=255) gATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCAt < 7:1919877/151‑1 (MQ=255) gATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCAt < 4:253306/151‑1 (MQ=255) aTGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATg > 6:895025/1‑151 (MQ=255) gCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGAt > 7:1295124/1‑151 (MQ=255) acaAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGCCCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATc > 2:676601/1‑150 (MQ=255) aaaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCAtt > 4:602707/1‑151 (MQ=255) aGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCAtttt > 1:1665018/1‑150 (MQ=255) aGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTg < 5:367783/151‑1 (MQ=255) ggCTGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTTCGATCGACCAGAGGTACCCCTTTAAAACGGGTGAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTg < 2:962966/150‑1 (MQ=255) ggCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTg > 3:237585/1‑150 (MQ=255) ggCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGa < 4:416240/151‑1 (MQ=255) ggCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGa < 3:1324971/151‑1 (MQ=255) gCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGAt > 2:1075511/1‑151 (MQ=255) cGGATATATCAATCACGTATCAGCCCACCCGGCTACTACCACACATCATCCTTCCTTAGCAAACTAGAATACAATCCACAAGACCAACCCCTATAAAACGGGTCAGGACGCCCCGC‑C‑TTTAATCGAAAGTGACTTCCATGATCATTTCATc > 4:1413077/1‑151 (MQ=255) ggATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGATGCTTCGCAAACTAATTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCg > 2:1591690/1‑151 (MQ=255) ttATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCa < 2:1387337/150‑1 (MQ=255) ttATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCa < 3:153466/150‑1 (MQ=255) ttATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACACCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAACTGACTTCCATGATCATTTTATCGCCac > 1:1504598/1‑150 (MQ=255) tATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAgg > 5:1464156/1‑151 (MQ=255) tcaatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGc > 8:2182317/1‑150 (MQ=255) aatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACg > 5:1819542/1‑151 (MQ=255) aatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACg > 5:825722/1‑151 (MQ=255) caCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGAcc < 6:2150499/151‑1 (MQ=255) caCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGAcc > 4:1835264/1‑151 (MQ=255) aCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCg < 3:513172/151‑1 (MQ=255) aCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCg > 4:1162776/1‑151 (MQ=255) aTCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGgcg > 5:2189790/1‑151 (MQ=255) aGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATGATTTGATCGCCAGGCACGACCGGGCGCtt > 6:763418/1‑151 (MQ=255) aGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGCCCGGGCGCtt > 4:2159947/1‑151 (MQ=255) ggCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTg > 7:537833/1‑151 (MQ=255) gCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGa < 4:1043837/151‑1 (MQ=255) cTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGCGG‑TTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGa > 6:1922747/1‑149 (MQ=255) cTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGa > 5:1684478/1‑149 (MQ=255) tCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgc > 1:963442/1‑151 (MQ=255) tCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgc > 6:149337/1‑151 (MQ=255) cGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgcgcg > 3:411679/1‑151 (MQ=255) cTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCtt > 5:140541/1‑151 (MQ=255) aCGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCtt < 5:1254081/149‑1 (MQ=255) aCGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCg > 7:1717221/1‑151 (MQ=255) aGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGCGG‑GTT‑TTCGGAAATGACGTACCTGATAATATTAAAGCCACGGACGACCGGGCCCGTGAAtcgccggtccggc > 8:2059091/1‑142 (MQ=255) gCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCa > 8:1118136/1‑150 (MQ=255) acacaTCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAAt > 8:1727043/1‑150 (MQ=255) catcatCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCa < 1:72968/151‑1 (MQ=255) catcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGc < 2:508556/150‑1 (MQ=255) catcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGc < 6:455168/150‑1 (MQ=255) catcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCg < 3:918233/151‑1 (MQ=255) cGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGaa < 7:2138291/150‑1 (MQ=255) gTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagt < 8:424521/151‑1 (MQ=255) ttGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagt > 1:1007481/1‑150 (MQ=255) tCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAgtagta < 1:2114748/149‑1 (MQ=255) cgcgAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTAc > 1:103632/1‑149 (MQ=255) ccAAACTACTTTACCATCGACCAGAGCTACCCCTTTAAAAGGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGc < 8:2286300/150‑1 (MQ=255) aaaCTACTTTACCATCGACCCGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTc < 8:1922987/151‑1 (MQ=255) aaaCTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTc > 6:261031/1‑151 (MQ=255) aaaCTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTc < 3:1157078/151‑1 (MQ=255) aaaCTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTc > 2:1981109/1‑151 (MQ=255) tACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGtt < 2:1698537/150‑1 (MQ=255) aCCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTcc < 1:457048/151‑1 (MQ=255) ccATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGTCGC‑GTTTT‑TTCGAAAGTGCCGTCGATGAACATTTGATCGCCAGGCACGCCCGGGCCCTTGAAGCGCGCGTCGTCAATACCAGCGCAGTAGTACCGCTCACCCGGTTccc > 6:559384/1‑150 (MQ=255) cGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGtt < 2:1889979/150‑1 (MQ=255) aCCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCCCGCCCGGGCGCTTGAAGCGCGCTTCGTCAATACCACCGCAGTAGTACAGCTCACCCGGTTCCAGttttg > 7:804597/1‑150 (MQ=255) aCCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGACAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATAAAAGCGAACTAGTACCGCTCACCCCGTTCCAGtttt > 8:1205957/1‑150 (MQ=255) gagCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTAc < 3:796554/151‑1 (MQ=255) cAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGCAAGTGACTTCCATGATCATTTGATCGCCAGGCACGCCCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTGCAGTTTTCCTACGCt > 7:342712/1‑151 (MQ=255) cAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCt > 4:1738433/1‑151 (MQ=255) cAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCt < 7:1585577/151‑1 (MQ=255) aCCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCttt > 6:1005847/1‑151 (MQ=255) cccTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTa < 1:678262/151‑1 (MQ=255) ccTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTGGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGCCCGGGCGCTTGAAGCGCGCGTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGGTTTCCTACGCTTTTa > 7:929617/1‑150 (MQ=255) cTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTGGAAAGTGACTTGCATGATCATTTGATCGCCAGGCACGCCCGGGCGCTTGAAGCGCGCTTGGGGAATACCAGCGAAGTAGTACAGCTCGCCCGGGTGGAGTTTTGCTACGCTTTTaa > 8:872321/1‑150 (MQ=255) ttAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTaaa < 3:610851/149‑1 (MQ=255) tAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACg < 8:545684/150‑1 (MQ=255) aaaaCGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGcc > 7:693831/1‑151 (MQ=255) aaaCGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCa < 1:1792196/151‑1 (MQ=255) aaCGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCac > 2:791430/1‑150 (MQ=255) aaCGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAg < 1:1961127/151‑1 (MQ=255) cGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGaa < 2:282913/151‑1 (MQ=255) cGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGaa < 5:602050/151‑1 (MQ=255) ggTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAAt > 2:1786960/1‑150 (MQ=255) ggTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAAt > 6:1312615/1‑150 (MQ=255) aGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACTGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTg > 6:1162037/1‑151 (MQ=255) ggCCGCGGCGCGG‑TTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGt < 4:1986580/151‑1 (MQ=255) ccGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTg < 5:1169716/151‑1 (MQ=255) ccGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTg < 7:1101226/151‑1 (MQ=255) cgcgGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGc > 4:1592182/1‑151 (MQ=255) gcggcgCGG‑TTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCCGCGAAGTAGTACAGCTCCCCCGGTTCCAGGTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGcc > 1:1356406/1‑151 (MQ=255) cggcgC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCt > 1:1254773/1‑151 (MQ=255) cggcgC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCt > 8:720628/1‑151 (MQ=255) | CCCTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑TTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCTGT > DH1/3668769‑3669064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |