| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 2,169,720 | 0 | C | G | 26.3% | 208.2 / 59.6 | 205 | E614Q (GAA→CAA) | rsxC | electron transporter RsxC |
| Reads supporting (aligned to +/- strand): ref base C (92/54); new base G (46/6); total (143/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.16e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 214 total aligned reads displayed.
TGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGG > DH1/2169573‑2169869 | gcgcgcGGGCAATAGCGGCGTCGACGGCCGCTTTGCGCGGATCGACCTGGTCTTCTGGCACGGCAGTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGttct < 1:707742/144‑1 (MQ=11) gcgcggtcaacaggcgCTTCGACGGCTGCTTTGCTCGTAGCGATGTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTCTTCTg < 8:278133/136‑1 (MQ=14) cttgCAATAGCCGCTTCGACCGCGTGTTTTCGCGGATCGACCTGAGGTTCTGGCTCGCCATTTGCCTGTTGATGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTg < 6:1051247/145‑1 (MQ=14) cGGGCAATAGCCGCGGCTACGGCCGCTTTGCGCGGATCGACGTGTTGTTGTGGTTCGGGTTTAGCCTGTTGCTGTTCCTGGTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTgg < 6:1279934/149‑1 (MQ=11) ggaaTAGCCTCGTCAACGGCGGCTGTGCGCGGATCGACCTGGTCTTCTTGCTCGGCATTAGCCTGCTGCTGTTCGCGCTTGCTTGCTTTGGCGCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCg < 5:1838333/149‑1 (MQ=11) cAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCCGATTTGCGCGGATCGACCTGTTGTACTGGATCCGc > 7:507211/1‑151 (MQ=255) aaTAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCa < 8:1281994/151‑1 (MQ=25) ggCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCTGTTTTGCGCGGATCGTCCTGGGGTTCTGCGTCCGGAttttcc > 5:349641/1‑147 (MQ=11) gCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCTGCTTAGACGGCGGCTTTGCGCGGATCTCCCTCTTGTTCTGGGTCGGGATTatgct > 7:1245112/1‑147 (MQ=11) ggtcctctctGCGCGGATCAACCTCTCGTCCTAGATCTGCATTCCCGTGTTGCTGTTCCTGTTTCGGTCTTTTGGCTCGTGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCt < 7:767730/141‑1 (MQ=2) cggcggCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGACCTGTTGTGCTGGTTCCGGATTTGCCTGTTGGTg > 5:2209244/1‑151 (MQ=11) ggtcTTTGCGTGGTTGGACTTGTTGTTCTGGCTCGGGATTAGGCTGTTGCTGTGCGTGGTTTCGTGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTc < 8:866618/148‑1 (MQ=14) cggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTAGAGGGCGGCTTGGCGCGTCTCGACGTGTTCGTCTCGTTCGGCATTAGCCTGTTGCTGTTc > 1:2275603/1‑151 (MQ=14) gtcTTTGCGAGGATATACCTGTTTTTCTGTATACGAATTTGTTTGTTGCTGTTCGTGTTTTTTTGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTca < 6:1576156/149‑2 (MQ=2) gcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCCACGGCAGTTTTACGAGGATCAGCATCTTGTGCTGGTTCCTTATTAGGCTGTAGGTGTGcc > 2:884660/1‑150 (MQ=11) gcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCGGCTTCCACGGCAGATTTGCGAGGATCACCAACTTATTCTGGTTCCTAATTTTCCTGGTGATCTTcc > 8:208394/1‑150 (MQ=11) gtttGCGGTGATGGAGCTGTTGTTCTGGCTCGGCATTAGCCTGTTTTTGTTCTTTTTTGCGTTCTTTGGATAGGTCAATAGGGGATTCGACGGTTGCTTTGAGGTGATCGATCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAg < 4:1873802/150‑1 (MQ=9) cTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCTGCTTCGACGGCGGCTTTGCGCGGATCGCCCAGTGGTTCTGGTTCCGGATTATGCTGTTGGTGTTcc > 7:1025080/1‑149 (MQ=11) gtcgcgcgcAGCCACCTGTGCGTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGGACGGTCAATAGCGCCTTCTCCGGCGGCTTGTCGCGGAGACACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGc < 3:373720/148‑1 (MQ=11) cgcgcgcGGATCCACCTGTTCTTCTGGCTCGTCATTAGCCTGTTGCTGTGCCAGCTTGCGGGGTTTTTCTCGGGCTATAGCCGATTCGAGGGCTGCCTATCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGc < 7:1839754/148‑1 (MQ=11) gggttgtttgACTTGTTGTTCTGGCTCGTTATTATCCTGTTGCTGTTCGTGTTTGCTGGCTTGTGCTCGGGCAATAGCGGCTGCTACTGCGGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCtt < 6:736825/141‑1 (MQ=14) cgGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGAGGATCGCCCAGGGGTTCTGGGTCCGGATTAGCCTGTTGGTGTTCCAGCTTgcgg > 4:1073216/1‑150 (MQ=11) tcttctttttgttCTGGCGACGAATTAGACGTTTTCTGTTGAAGATTGCGTTCTTTTTCACGTGGATTTTCGGATGTGACGGCTGCTTTGCGCGGATCTACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCt < 6:468212/142‑1 (MQ=2) cccaCCTGTTGTTCTGGCTCGTCATTAGCCTGTGGCTCTTCGAGGTTGCTCCGTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCtt < 8:1991782/148‑1 (MQ=11) gACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGTCAATGGCGGCTTCGACGTCGGCTTTGCGCGGAGCGAACTGTTGTTCTTGTTCCGCATTAGCCTGTTGATTTTACAGCTTGCGCGCTTTg > 5:726148/1‑151 (MQ=11) tgttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATCGCCATGTGGTGCTGGTTCCGGATTTTCCTGATGGTGTGCCAGGTTgcggcttgtttgcggtt > 1:2116446/1‑137 (MQ=11) tgttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCCCCCTGTGGTTCTGGGTCGGCAGTTTCCTGATGCTGTTCCTGGTTGCGCCGGTTGGCACgcc > 3:789233/1‑149 (MQ=11) gttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCTGGTTTTCGGGGATCGCCCTGTGGTGCTGGTTCCTGATTTTCCTGTTGGTGTTCCAGCTTgcgcgggttttccgcgtt > 3:1596068/1‑138 (MQ=11) atGGCTCCTCATTATCCTTTTGCTGTTCCTGTTTTTTGGCTTTTGCTCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAAt < 4:1830277/150‑1 (MQ=11) gggCTCGGCATTAGCGTTTTGGTGGTCGAGGTTTCGTGCGTTGGGACGGTGTTTAGGGTCTTCTTCGGCGGCTTTGTGCGGTTCGACCTGTTCTTCTGGTTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATa < 5:1262350/150‑1 (MQ=9) ggCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGGATTTGCCTGTTGGTGTTCCAGCTTGCGCGCTTTGGCCCGGTCAAtcg > 7:438300/1‑149 (MQ=11) cgccccgCAGTAGCCGGTTGCTGTTGGTGCTTGCGGGCGTTGGCGCGTGCACGAGCGGCTTGTACGGCCTCTTGGGGAGGCTCGAGCTCTTCCGCTCTTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAg < 5:64087/145‑1 (MQ=2) gCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGATTGCGCGCTTTGGCCGGGGCAATCGc > 7:1065966/1‑151 (MQ=11) cccccaccctcttccgCTCTTCCAGCTTGCGTGCTTTGGTTTTTTTAATTTTTGCTTCTACGGCTTCTTTTCGCGGTGCTACCTGTTTTTTTGGATCCTCTTTAGCCTTTTGATGTTCCAGCTTGCGGGCTTTGGCACGGGCAATAGCgg < 8:1436766/135‑1 (MQ=2) gCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCGATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGGCCTCTTGTTCTGGTTCGGGATTTGCCTGTTGCTGTTCCAGCTTGCGCGCGGTGTGCCGGGTAATAGcttc > 1:908175/1‑146 (MQ=1) aTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCGGCATTAGCCTGTTGGTGTTCCAGCTTGCGCGCTGTGGCCCGGGTAATAGCTGCTTCg > 1:548283/1‑151 (MQ=11) tAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGAc > 3:355982/1‑151 (MQ=255) acccTTTTGCTGTTCGTGTTTTCTGGCCTTGGCTCGGGCAATAGCGGCGTCTACGGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAcg < 8:1798812/149‑1 (MQ=11) aGCTTGTTGGTGTTAGAGATTGTGTGCTTTGTCGAGGGTATTCGGCTCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAcg < 2:2240434/151‑1 (MQ=14) aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGCTTCCGCATTATCCTGTTGATGTTCCAGCTTGCGAGCTTTGTCCCGGGAAATAGCTGCTTCGAcc > 8:787187/1‑150 (MQ=11) aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGAGCCGTTGAGCGGAGCGCGCTGTTCTTCAGTGACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGAACGGGCGATAGCGGCTTCGCcg > 1:392660/1‑151 (MQ=11) gCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGACCTGTTGTTGTGGGTCCGCATTAGCCTGTTGCTGTTACAGCTTGCGCGCGTTGGCGCGGGCCATAGCGGCTTCGAcgg > 3:700169/1‑151 (MQ=11) ccTGTTGCTGTTCCAGCTTGCGTGCGTTGCCTCGGGCAATAGCCGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 7:1667766/151‑1 (MQ=255) tGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGtt > 4:1569188/1‑106 (MQ=35) tGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGtt < 7:1548485/106‑1 (MQ=35) tGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTCCGCGGATCGCCCTGTTGTTCTGGGTCCTGATTAGCCTGATGGTGTTCCAGATAGCGCGCTTTGGCACGTGAGATCTCGGCTTCCAAGGCCGCtt > 1:1142769/1‑151 (MQ=11) cAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATCGGCATGATCTTATGATTCCGCATGTGCAGTTTACTCTAAAAGCTTCAGCGCTTTGGCCCGGGCGATAGCGGCTTAAACGGCTGGTTTGCggggt > 5:868931/1‑150 (MQ=2) gCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGGTGTTCCAGCTTGCGCGCTTTGGCCCGGGGAATAGCTGCTTCGACGGCATTTTTGAGCGGATc > 1:1678661/1‑151 (MQ=11) ccctcccggCTTCGGCCCGGGCAATAGCGGCTTCTACCCCAGCTTTCCGCCTATCTACCTGCTCATAAGTGTCTGCATTAGACACGTGCTCTGAAACCTTCCGCGCTTTGGCTCGTGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 1:1441591/143‑1 (MQ=2) gctcctcccctcggCGCGGGCCCTAGCCGCTGCTTCTGCCGCTTTTCGCGGAGCTACCTGTTCTTCTGCGTCCTATTTAGCCTTTGGCTGTTCGAGCTTGATCGCTTTTGCTCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCg < 2:54055/139‑1 (MQ=2) cTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGAGGATCCACAAGTTGTTCTGGTTCCGAATTATCCTGTTGATGTTAAAGGATGCGAGATTTGTAACGGGCAATAGCGCCTTCTACGGCTCGTTTGCGGGGATc > 2:683419/1‑150 (MQ=2) ttGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGGTGTTCTGGTTCCGCAGTAGCCTGTTGCTGTTCCAGCTTGCGCCCTTTGGCCCGGTCAATCGCTGCGTCGACGGCCGGTTTGCGAGGCTCgt > 6:208190/1‑150 (MQ=11) ttcttGCTTCGCCACGGGCAATCTCGTCTGCGTCCGCGTCTCTTCGCGTACAGTACTGTCTTCCTTGGTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCTGCTTCAACGGCAGTTTTACGTGGATcag < 8:1571153/146‑3 (MQ=12) cGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCTGATTTTCGAGAAACGAACAGTTAATATGTTTCATAATTAGACTTTTGCTGTTAAAGATTGCGAGCTTTGGCTATGGATATAGATAATTCGACGGCGGGTTTGCGAggtgggacgt > 4:319878/1‑143 (MQ=2) tttGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCCAGCTTTGGCCCGGGCAATAGCTGCTTCGACGGCCGTTTTTCGAGGATCCTCCtggggt > 7:1032774/1‑147 (MQ=11) cgcgcGGGCACTAGGGGGTTCGTCGGCCGCTTGGCGCGGAGCGAGCTGCGCTTGTGGGACCGCATTAGCGTGGTGGTGTTACCGGTTGCGCGCTTTGGCTCGTGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTc < 3:1770314/146‑1 (MQ=2) agcgcGGGCAATAGCCGCGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCGCGGGCAATAGCGGCTTCTCCGCCGCCGTTGCGGGGGTCCTCCtgttagtat > 1:2071179/5‑146 (MQ=14) cACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCAGTTGTTCTGGTTCCGGATTTGCCTGTAGCTGTTCAAGCTTGCGCGCTGTGGCACGGGCAATAGCGGCTTCCACGGCCGGTTTCCTAGGATcacccacgggtgctgg > 7:1492475/1‑136 (MQ=11) aCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTGCTggg > 7:114124/1‑150 (MQ=255) cAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGTTTTGCGCGGATCCCCATGGGGTTCTGCTTCGGc > 3:2164767/1‑151 (MQ=14) cAATAGCCGCGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCGCAGAGAATAACCGCGTCGACGACGGATATACTCTGATCGCCAtgttataaatcgtcggc > 6:494245/1‑138 (MQ=12) aaTAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGACCTCGTGTTCTgcgtcggg > 5:389865/1‑143 (MQ=14) aaTAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACATGTTGTTCTGGGTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCGCGGGCTATAGCGGCTTCGACGGCTGGTTTGCGAGGATCTCCCAGGTGTGCTGCTTcgta > 8:1909014/1‑147 (MQ=11) aaTAGCCGCTTCGACGGCTGAGTTGCTCGGCTCGACCTGTTCTCGTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCa < 7:887382/151‑1 (MQ=11) tAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCTGCTTCTACGGCAGTTTTTCGAGGATCTTCCTCGGGTTCTGCTTcctgatt > 1:46404/1‑146 (MQ=11) aGCGGCTTCGACGGCGGCTTTCCGCGGATCGCCCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTCCGCGCTTTGGCACGGGCAATAGCGGCTTCCACGGCACCATTTCGCGGATCCACCAGGGGTTCTGCGTCCgtagt > 4:1669147/1‑146 (MQ=14) gCTTCGACGGCGGCTTTGCGAGGATCGACCTGTTGTTCTGGTTCCTCATTATCCTGTTGCTGTTCCAGCTTGCGCGATTAGTCCCGGGAACTAGCTGCTGCGACGGCAGTTTTTCGAGGATCATCCAGGTGTTCTGCTTcgggagttggat > 4:849219/1‑140 (MQ=2) cccgcGACGGCCGCGGGGCGCGGATCTAGCTGCTCTTCTGGGTCCGCATTAGCCTGGCGCTGTAGCGCCTGGAGTTCTGAGGCGCGCGCATCCGAGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCt < 1:1792640/147‑1 (MQ=2) ttCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTGCGCGGATCGCCCTGTGGTGCTGCTTCGGGATTAGCCTGt > 5:1003719/1‑151 (MQ=14) tCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCCATAGCTGCTTCAACGGCAGATTTGCGAGGATCACCCTCTTTTTCTGCTTCCTGATTATCCTGt > 4:634026/1‑150 (MQ=11) tCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCCCGCTTTGGCACGGGCAATAGCTGCTTCAACGGCGGATTTCCGAGGATCATCCTGGGGTTCTGCGTCCGAAGTATCCTggt > 6:63769/1‑149 (MQ=11) gcGACGGCGGCTTTGCGCGGAGCGTCCTGTTCTTCTGGGTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGtt < 8:1673895/150‑1 (MQ=255) cGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCTGCTTCGACGGCAGATTTACGAGGATCCGCCAGTTGTTCTGGTTcgtaattttcctga > 6:309727/1‑136 (MQ=11) gACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTACGAGGATCGACCTGGTGTTCTGGTTCCGGATTATCCTGATgg > 2:1801344/1‑150 (MQ=14) gcggcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCCACGGCAGGTTTGCGAGGATCGACAAGTGTTTCTGCTTCCTAAGTAGCCTGATGATGtt > 2:341471/1‑151 (MQ=14) cagcTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGATTGCGCGCTTTGGCACGGGCAATAGCg > 6:383919/3‑86 (MQ=11) ggcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGGATTAGCCTGTTGCTGTTcc > 7:828349/1‑151 (MQ=255) gcTTTGCGCGGATCGACATGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCAACGGCAGATTTACGAGGATCACCAACTTTTTCTGCTTCCTAATTATCCTGATgatcttaa > 6:1868891/1‑143 (MQ=11) tGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCTGCTTCAACGGCGGATTTGCGGGGATCCGCCTCGTGTGCTGGTTCCTCAGTATCCTGGTGATGTTCCAGAtt > 2:210864/1‑151 (MQ=14) tGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCAACAAGTTGTTCTGGTTCCGCATTATCCTGAAGGTCTTCCAGCtt > 4:1207157/1‑151 (MQ=14) agcgcGGACCCACCTGCTCGGCTGGATGTGTATTATCCTGTTGGTGTGCCAGCTTGCGGGCTTTGCGTCCGTCAATTGCCGCCTAGTCCGCTGCCGATCTCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCtt < 1:1019473/150‑1 (MQ=0) cgGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGCCCTGTTGTTCTGGTTCCGCATTATCCTGTTGCTGTTCCAGATTgcgg > 7:973320/1‑150 (MQ=255) gATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGAGGATCGACCTGTTGTTCTGGTTCCGGATTAGCCTGTTGGTGTTCCAGATTgcgagc > 1:744413/1‑151 (MQ=14) aTCGCCCTCTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCt < 3:1889261/151‑1 (MQ=255) aTCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGGGGATCGCCCTGTTGTTCTGGTTCCGCATTATCCTGTTGCTGTTCCAGATTgcgcgat > 3:980600/1‑149 (MQ=14) aTCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCt > 3:1109791/1‑151 (MQ=255) tCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCCACGGCCGCTTTCCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTCTTCCAGCTTGCGCGCtt > 8:76134/1‑151 (MQ=255) cGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCCGCTTTGCGCGGATCGCCCAGTTGTGCTGGTTCCGCATTTGCCTGTTGGTGTTCCAGCTTgcgacattt > 3:890644/1‑145 (MQ=14) gACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGCCCTGTTGTTCTGGTTCCGGATTAGCCTGTTGCTGTTCCAGCTTGCGAGCttat > 7:2142118/1‑149 (MQ=255) gACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCCACCTGTTTTTCTGCTTCCGCATTTTCCTGTTGGTGTTCCAGCTTGCGCGCTTTg > 6:1370048/1‑151 (MQ=14) gACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGGTGTTCTGGTTCGGCATTAGCCTGTTGATGTTCCAGATTGCGCGCtttt > 6:681893/1‑150 (MQ=255) ccTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATCGGCAACTGGTGCTGGTTCCTGATTTTCCTGAAGATCTTCCAGATTgccgggtttttc > 5:1378562/1‑141 (MQ=2) ccTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCTGCTTCGACGGCTGGTTTGCGAGGATCGCCATCGTTTTCTGGTTCCGTATTATCCTGTTGGTGTTCCAGCTTGCGCGCttattg > 1:2023255/1‑147 (MQ=14) ccTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCTGCTTCGACGGCGGCTTTGCGAGGATCGCCCTGTTGTTCTGGTTCCGAATTAGGCTGTTGGTCTTCCAGCTTGCGGGCTTTgtc > 5:64500/1‑149 (MQ=14) cTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGAGGATCGCCCACGTTTTCTGGTTCGTCATTATCCTGTTGGTGTTCCAGCTTGCGCGAGTTgggc > 8:1383352/1‑149 (MQ=14) tGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCTGCTTCGACGGCGGCTTTGCGAGGATCGCCATGGTGTTCTGGTTCCGGAGTTTCCTGTAGGTGTTCCAGATTGCGCGAtttttcgg > 8:663504/1‑146 (MQ=14) gttgttCTGTTTTCGCTTTAGGTTGTTGTTGTGATCTCTTGCGTGCTTTGGCTCGTGCAATAGCTGCTTCGTCGGCTGCTTTGCGCGGATCTAGCTGTTGTTCTGGTTCCGCATTAGGCTGTTGCTGTTCCAGCTTGCGCGCTTTGgcac < 6:1146525/150‑3 (MQ=2) gTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGCCCTGTGTTTCTGGGTCCTGATTTTCCTGTTGGTGTTCCTGCTTCCGCCCTTTgtggcg > 5:2146478/1‑146 (MQ=14) ttcttcTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCgg > 7:1803371/1‑151 (MQ=255) ttcttcTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCCCCATGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGATTTGGCGCgg > 7:1927589/1‑151 (MQ=255) | TGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGG > DH1/2169573‑2169869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |