| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | DH1 | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 3,668,919 | 1 | . | T | 96.0% | 1433.6 / 39.4 | 397 | pseudogene (358/455 nt) | lpxA | hydroxymyristoyl‑ACP dehydratase |
| Reads supporting (aligned to +/- strand): ref base . (14/2); new base T (175/206); total (189/208) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.34e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 437 total aligned reads displayed.
CCCTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑G‑T‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCTGT > DH1/3668769‑3669064 | cccTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGcg‑c‑g > 5:1033195/1‑151 (MQ=255) tctTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑G‑t‑tt > 5:722835/1‑151 (MQ=255) tCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGTGTCAGGCCGCGGCG‑C‑G‑t‑tt < 4:484995/148‑1 (MQ=255) ccACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑G‑t‑tttttc > 6:204791/1‑149 (MQ=255) ccACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑G‑t‑tttttc < 3:561098/151‑3 (MQ=255) ccACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑G‑t‑ttttt < 3:1105855/150‑2 (MQ=255) caATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑G‑t‑tttttcgaa < 7:1840646/151‑6 (MQ=255) caATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑G‑t‑tttttcgaa < 7:1372782/151‑6 (MQ=255) caATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑G‑t‑tttttcga > 7:1672474/1‑146 (MQ=255) aaTGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGaaa < 1:1036322/151‑1 (MQ=255) aTGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAg < 3:663591/151‑1 (MQ=255) cGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑CGG‑T‑TTTTCGAAAGTGAc > 6:97984/1‑151 (MQ=255) ttGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTc > 7:1909976/1‑151 (MQ=255) ggATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCa < 8:823063/151‑1 (MQ=255) aTGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGCCTTCCATg > 7:1059442/1‑151 (MQ=255) gCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGa < 1:728413/150‑1 (MQ=255) cacaAAGGCGGATTTATCAATCACGTATCANGCCTCCCGGCTACGAGNACACATCNNCGTTGCTNCGCAAANNACTTTNACATCNACCAGAGCAACCNCTTTANANCGGGTCAGNCCGCGGCG‑C‑G‑TNTNTTCGNAAGTGACTTCCATGAt > 2:1404941/1‑150 (MQ=255) acaAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATc > 8:1742432/1‑150 (MQ=255) aaaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCAtt < 2:1697994/151‑1 (MQ=255) aaaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCAtt < 6:1662816/151‑1 (MQ=255) aaaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCAtt > 7:607130/1‑151 (MQ=255) aaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCAttt > 4:1406551/1‑151 (MQ=255) aaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCAttt < 5:1229430/151‑1 (MQ=255) aaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTCCTACGCAAACTACTTTACCATCCACCAGACCACCCCCTGTACAACGGGTCACGACGCGGCG‑CGG‑T‑ATGTCGCAACGGACATCCCTGATCAatt > 1:1669979/1‑151 (MQ=255) cggCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTg < 6:1392144/150‑1 (MQ=255) ggCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCACCCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGAACATTTg > 6:1214149/1‑150 (MQ=255) ggCGGATTTATCAATCACGTATCAGGCCACCCGGCTACGAGCACACATCATCGTTGCGTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGa < 3:927915/151‑1 (MQ=255) cGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATc < 5:576720/151‑1 (MQ=255) cGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATc < 8:113775/151‑1 (MQ=255) ggATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑CGG‑T‑TTTTGGAAAGTGCCTTCCCTGATCATTTGATCg > 8:750069/1‑151 (MQ=255) ggATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCg > 4:361373/1‑151 (MQ=255) ttATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCa < 6:422487/150‑1 (MQ=255) ttATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTAATTTACAATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGcc > 2:1117187/1‑149 (MQ=255) tATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAgg > 1:1735831/1‑151 (MQ=255) tATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAgg > 6:50284/1‑151 (MQ=255) atcaatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGc < 4:1768991/151‑1 (MQ=255) atcaatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCATCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAgg < 4:779269/150‑1 (MQ=255) caatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCa < 5:1812444/150‑1 (MQ=255) caatcaCGTATCAGGCCTCCAGGCTACGAGCACAGATCATCGTTGCTTCGCAAACTACTTTACCATCGTCCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATTATCATTTGATCGCCAGGCa < 5:1315256/150‑1 (MQ=255) atcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGa < 2:942313/151‑1 (MQ=255) caCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGAcc > 3:822835/1‑151 (MQ=255) aCGTATCAGGCCTCCCGGCTACGATCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGCC‑T‑T‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGAc > 5:1701346/1‑149 (MQ=255) aCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCg > 8:1417150/1‑151 (MQ=255) tATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTGGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGCCCGGgc > 5:99762/1‑151 (MQ=255) tATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGgc > 2:128460/1‑151 (MQ=255) aTCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGgc < 6:109281/150‑1 (MQ=255) aTCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGgc < 3:1689715/150‑1 (MQ=255) cAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCt > 1:1202828/1‑151 (MQ=255) gCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTg > 4:891831/1‑150 (MQ=255) ccTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGaa < 4:303746/151‑1 (MQ=255) cccGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgc < 2:215341/150‑1 (MQ=255) cccGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAg < 8:345975/149‑1 (MQ=255) ggCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgcgcgc > 3:751235/1‑151 (MQ=255) cTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCtt > 3:1753117/1‑151 (MQ=255) gCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCa > 8:310342/1‑150 (MQ=255) gacagttcttagTTGCTTCTCATACTACTTTACCATCGTCCATAGCATCCCCTTTATAACGTGTCTGGCGGGGTCG‑A‑GTT‑TTTTCGAAAGTGACTTGCATGATCATTTGATCGCCAGGCACGTGCGGGGGCTTGAAGCGCGCTTCTTCat < 8:1294966/139‑2 (MQ=255) acacaTCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAAt > 4:1179059/1‑150 (MQ=255) acaTCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATAcc > 2:1632177/1‑151 (MQ=255) catcatCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCa < 1:1573455/151‑1 (MQ=255) catcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCACTTTAAAACGGGTCAGGCCGCGGCG‑CGG‑T‑TTTTCGAAAGTGACTTCAATGATCATTTGATCGCCAGGGACGCCCCGGCGCTTGACGCGCGCTACGTCAATAcccccc > 8:1597226/1‑147 (MQ=255) cGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGaa < 5:942791/150‑1 (MQ=255) cGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGaa < 7:768831/150‑1 (MQ=255) ttGCTTCTCAAACTTCTTTACCTTCGACCAGAGCAACCCCTTTAAAACTGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCTCCAGGCACGACCGGGCGCTTTAAGCGCGATTCGTCAATACCAGCGAagt < 3:1616025/150‑1 (MQ=255) ttGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagt > 7:861597/1‑150 (MQ=255) tGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagta < 5:1399278/150‑1 (MQ=255) tGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagt > 7:336315/1‑149 (MQ=255) gCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagtagt > 4:659004/1‑151 (MQ=255) gCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagtag < 1:317443/150‑1 (MQ=255) cTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagtagt > 5:187330/1‑150 (MQ=255) tCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAgtagta < 2:558294/149‑1 (MQ=255) gCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGc < 2:71954/151‑1 (MQ=255) cAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCt > 3:1531440/1‑151 (MQ=255) aaaCTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTc > 5:251141/1‑151 (MQ=255) aaaCTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTc < 3:207600/151‑1 (MQ=255) aaaCTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTc > 6:302479/1‑151 (MQ=255) aaCTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTcc > 4:125359/1‑150 (MQ=255) ctactTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCAcc > 8:517053/1‑151 (MQ=255) actTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCAccc < 7:398689/150‑1 (MQ=255) tACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGtt < 1:1405621/150‑1 (MQ=255) tACCATCGACCAGAGCAACCACTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCTCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTAACCCGGTTc > 1:239741/1‑151 (MQ=255) ccATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCa < 2:34056/151‑1 (MQ=255) ccATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCa < 3:1834023/151‑1 (MQ=255) aTCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCCAAAGTGACTTCCATGATCATTTGATCGGCAGGCACGACCGGGCGCTTGAAGCGCGCTTCCTCAAAACCAGCGAAGTAGTACACCTCCCCCGCGTCCAGt > 3:1167442/1‑151 (MQ=255) cGACCAGAGCAACCCCTTTAACACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACGTCCATGAGCATTTGATCGCCAGGCCCTACCGGGCGCTTGAAGCGCGCTTCGTCAATCCCAGCGAAGTAGTACAGCTCCCCCGGTTCCAGttt > 5:460711/1‑151 (MQ=255) cGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGtt < 6:606439/150‑1 (MQ=255) gACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGtttt < 8:1002768/151‑1 (MQ=255) gACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGtttt > 3:1398217/1‑151 (MQ=255) aCCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTc < 7:1538572/151‑1 (MQ=255) agagCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCACGCACGACCCGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCt > 1:885866/1‑150 (MQ=255) aaCCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCtt > 4:158132/1‑151 (MQ=255) aCCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCttt < 2:1561141/151‑1 (MQ=255) ttAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTaaa < 8:228816/149‑1 (MQ=255) ttAAAACGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTaaa < 7:1219337/149‑1 (MQ=255) aaaCGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCa < 8:641656/151‑1 (MQ=255) cGGGTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGaa < 3:280674/151‑1 (MQ=255) gggTCAGGCCGCGGCT‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAAt < 7:280078/151‑1 (MQ=255) gggTCAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAAt > 1:3990/1‑151 (MQ=255) cAGGCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCt > 6:856251/1‑151 (MQ=255) gCCGCGGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGtt < 4:1151346/151‑1 (MQ=255) cgcgGCG‑C‑GTT‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGc > 2:815393/1‑151 (MQ=255) | CCCTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCG‑C‑G‑T‑TTTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCTGT > DH1/3668769‑3669064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |