Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | DH1 | 2,169,577 | 0 | T | G | 28.1% | 278.3 / 73.5 | 262 | R661R (CGA→CGC) | rsxC | electron transporter RsxC |
Reads supporting (aligned to +/- strand): ref base T (45/137); new base G (9/62); total (63/199) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.04e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 267 total aligned reads displayed.
GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGT > DH1/2169429‑2169727 | gTTCTTCTGGTACCTCATTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCt < 2:305101/149‑1 (MQ=255) gTTCTTCTGGTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCt < 4:1056434/149‑1 (MQ=255) gTTCTTCTGGGACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTc < 7:134144/150‑1 (MQ=255) tcttctGGTTCCGGATAAGCCTGCTGCTGTTCCTGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCgg < 4:336184/150‑1 (MQ=25) tcttctGGTACGGGATTAGCCTGTTGCTGTTCCCGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCgg < 7:501112/150‑1 (MQ=255) tcttctGGGACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCgg < 1:1001840/150‑1 (MQ=255) atGGTACGGCATTAGCCTGTTGCTGTTCGTGGTTGGGTGCTTTGGCGCGTGCAATAGGCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCaa < 1:1768040/149‑1 (MQ=17) ggTTCCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCaa < 4:475030/148‑1 (MQ=255) aCCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCg < 1:314719/150‑1 (MQ=255) aCCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCg < 5:1685034/150‑1 (MQ=255) ccGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCAGCTTAGACGCCCGCTTAGCCCCGCTAGACATCTTCGTCTCGCTCCTCATTAGCCGGGTGCTGTTCC‑ACATTGAGCGCTGTG‑gggcgggcgagaggggg > 7:1657025/1‑142 (MQ=2) cGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTGTTCTGGGTAGGCATTATCAGGTGGCGGGTCC‑AGTTGCCTCTCTTTG‑GCCCggggcgtatcgcct > 5:283320/1‑140 (MQ=9) cATTAGCCTTTTTCTTTTCCCGCTTGCGTGCGTTCGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTc < 4:710546/151‑1 (MQ=21) aTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTGATCGGAGATCCGGCGGGTATTCTAACACGGCTTTAGAGTGTTGATGTTGC‑CGTTTGCGCGCTTTG‑GGTAGGGAAATAGCGGCTTCg > 6:1535079/1‑151 (MQ=9) ttAGCCTGTTGCTGGGCCCGCTTGCGTGCTTGGGCGCGGGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCg < 6:1097337/150‑1 (MQ=25) tAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCAGCATTAGAAAGTTGATGTTCG‑CGATTGCGCGCTTTG‑GCTAGGGAAATAGAGGCTTCGAc > 6:857919/1‑151 (MQ=17) gCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGGATTGCGCGACTCCACGTGTTATGAGCGGTCAGCATAATCGGGTTGCTGTTCC‑CTCTTGCGCGGTTTG‑GAACGGGCGATAGCGGCTTCGCcgg > 5:1042589/1‑151 (MQ=9) ccTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTAATCTACTCGATCAGCGTTAGACTGTTTATGTTAC‑AGTTTGAGTGCTTTG‑GCTCGGGAAATatagtattagaaggc > 6:94029/1‑137 (MQ=9) ccTGTTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGAcggc < 3:707615/151‑1 (MQ=255) gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGAAAACACCAGAGCTTCTGGGTCGGCAATAGACTTTAGCTTTTAC‑ATGATGAGCGGTTTG‑GCACGGTCAATAAAACATTCGAcggcggg > 4:440914/1‑150 (MQ=2) tGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCAGCTGCGAAGGCCGGGTTGGGCGGATAGACGTGTTATTATTGATACGCATTAGCCGGTTGCTGTTAC‑ATTTTAAGAACTTTG‑GCTCGGGCAATAGCGGCtgggaggggggggg > 2:943594/1‑138 (MQ=2) tGCTGTTCCAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCt < 8:1431946/150‑1 (MQ=255) gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCttt < 8:1716747/151‑1 (MQ=255) gCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCttt < 3:433696/151‑1 (MQ=255) gttcgtgCTTTCTTGCTTTCGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg < 2:688728/145‑1 (MQ=17) gTTCCCGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg < 1:1479651/151‑1 (MQ=255) gTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg < 1:731968/149‑1 (MQ=255) ttCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCCACGGCAGCTTTCGGCCCAACGACCTGTTCATATGCATAGTCATTAGCCTCTTTCTGGTGC‑AGCTTGAGCCATATG‑TATCGGGGGATTGCGGCTTCGAcgggctcggtcggg > 1:1650822/1‑140 (MQ=2) gtCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc < 1:557375/150‑1 (MQ=255) cAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa < 8:78167/151‑1 (MQ=255) aGCTTTAGTGCGTTGGCGCGTGCAATAGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGCTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTC‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt < 3:1632222/151‑1 (MQ=17) aGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGCCGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGAGCTTTG‑GCTCGGGCAATAGCGGCGTCGCGGGGGGCTGTGGGCGGAt > 5:1403878/1‑151 (MQ=25) gcttttttGCTTTTGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt < 6:68498/143‑1 (MQ=255) ccTTGCGTGCCTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 3:816167/150‑1 (MQ=255) tGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGATTTGCGAGGATCAACCTATTCTTCTCGGTACGCATTAGCCTGTTGCTGTTCC‑AGATTGAGAGCTTTG‑GCGCGGGCAATATATGCATAAACGGCAGCTTTGCGGGGAtgcac > 4:593615/1‑147 (MQ=2) gctggccttcgcgcGTGCAATAGCCGCGGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc < 4:1791239/140‑1 (MQ=17) cccggcctgcgcgcGGGCAATAGCCGCTTGTACTGCCGCTTTGCGCGGCTCAACCTGTTCTTCTTCATGCGCATTAGGTTGTTCCTGTTCC‑CGTTTGCGCGCTTTT‑GCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGAcc < 1:257254/141‑1 (MQ=9) tGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCACCTTTGCGCGTATAGACCTGTTATTCTGTATACGGATTAGCAGGTTGCTGTTCA‑CGATTGAGCGCTTTG‑GCAAGGGCAATAGCGGCTTCGACGGCTCGGTTGCGCggctgggagggt > 2:383761/1‑141 (MQ=9) gCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt < 4:1572619/151‑1 (MQ=255) gttGGCGCGGGCAATAGCCGCTTCGAAGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttgt < 7:473597/150‑1 (MQ=255) tGGCGCGTGCAATAGCCGCGGCTACTGCAGATTTGCGCGGAGCAACGTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCG‑CGTTTGCGGGCTTTG‑GCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTgttgtt < 4:1456701/150‑1 (MQ=14) ggggcgTGGAATAGCCGCTTGTACTGCAGCTTTGCGCTGTTCTACCTGATCTTCTTGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTGG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt < 8:1549776/148‑1 (MQ=14) ggCGCGTGCAATAGCCGCTTCTACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt < 7:1832304/151‑1 (MQ=255) ggCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt < 5:1266727/151‑1 (MQ=255) ggCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGATCCGCATTAGCCGGATGCTGTTCC‑CGGTTGCGCGCTGTG‑CCTCGCGATATAGCGGCTTCGACGGCGGCGTTGCGCGGCTCGACCTgttgttgt > 3:192060/1‑149 (MQ=18) gcgcGTGCAATAGCCGCTTCTACGTCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGGGCTTTT‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg < 4:1199443/151‑1 (MQ=255) gcgcGTGCAATAGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg < 8:675976/151‑1 (MQ=255) gcgcGGGCAAGAGCCGCTTCTACTGGCGCTGAGCGCGGCTCATCCTCTTGTGCTTCATCGGCATTCCCCTCTGCCGGTTGC‑CG‑TTGCGCGGGGTGCGCGCGGGCAATAGCGGCGTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTg < 7:1777129/151‑1 (MQ=2) gCAATAGCCGCGGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg < 6:777331/151‑1 (MQ=255) aaTAGCCGCGGCTACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCa < 6:1122800/151‑1 (MQ=14) tAGCCGCGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCC‑AGCTTGCGTGCTTTG‑GCGCGGGCAATAGCAGCTTAGCCGGCCCCGTTGCCAGTCGCGACCGGTTATTCTCGCTCGGCttt > 3:1711094/1‑151 (MQ=17) gaggggcaactgccgCTTTGCGCTGATCTACCTGTTCTTATGGCTCGTCTTTATCCTGTTGCTGTTCG‑GGTTTTCGGGCTTTG‑GCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGc < 8:1872224/137‑1 (MQ=14) cgcgTCGTCTGCAGCTTCGGGCGGCCCCACCTGTCCTTCTGGCTCCTCACTAGCCTTCTGCTGCGGC‑CGCTTGCCCGCTGTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGcc < 4:193050/151‑1 (MQ=2) cGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑AGGTTGCGCGCTTTG‑GCGCGGGCGATAGctg > 5:1465049/1‑96 (MQ=11) gtgcatatggaGCTTTTCGCTTTTCTACGTGTTCTTCTGGCTCCTCATTAGCCTGTTGCTGTTCG‑CGTTTTCGGGCTTTG‑GCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGcc < 8:548424/139‑1 (MQ=14) ggctactgccgCTGTGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCG‑CGTTTGCTCGCTTTG‑GCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGt < 6:139902/141‑1 (MQ=14) ccactgccgCTTTGCGCTGAGCCACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGGTCC‑CGTTTGCGCGCTTTC‑GCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg < 1:984476/143‑1 (MQ=14) cGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg < 3:1775662/151‑1 (MQ=255) gACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc < 8:111340/151‑1 (MQ=255) aggcgaGCTGTGCGCTGCTCATCGTGTTCTTCGGGTGCCGGACTCGCGTGTTGC‑GTTCCGAGCTTGCTGGCCTTC‑GCTCGGGCAATAGCGGCTTCCACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCt < 3:1473072/146‑1 (MQ=2) ctttcgCTTTGCGCGGATCTTCCTCTGTTTCTTGCTCGTTTTTATCCTGGTGCTGGTCG‑GGTTTTTTGGCCTTT‑GCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc < 6:20630/144‑1 (MQ=2) gCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCAATAGCCGGGTGCTGTTCC‑CGATTGCGCCCTTTG‑GCTCGGGCAATAGAGGCTTCGACGGCGGCTTTCCTCGGATCGACCTGTTGTTCTGGGTCGGCTGTGGCGTGTTGCGGtg > 7:1047844/1‑150 (MQ=14) gcgtgccggggctccaCCTGTTCTGCTGGCTCCGCATGAGCCTGCTGCTGGGCC‑CGTTTTCGGGCGTTT‑GCTCGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa < 5:1651694/136‑1 (MQ=14) tttttcgagtatttcccTCTTCTTCTGTCTTCGGATTTTCCTGTTGCTGGGCG‑GGTTTTTTGGCTTTT‑GCGCGGGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa < 4:824380/135‑1 (MQ=2) gttttCGCGGATGATCCTGTTCTTGTGGCTCGTCATTAGCCTGTTGCTGTTCG‑GGTTTGAGGGCGTTG‑GCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa < 8:319719/149‑1 (MQ=14) tttGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGATCGGCATTAGCCTGTTGCTGTTCCAgg > 7:752338/1‑150 (MQ=255) gtGCGCGGAGCCACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTT‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAg < 5:652277/148‑1 (MQ=255) gcgTATCAACCTGTTCTTCTTGCTCCGCATTAGCCTGGTGCTGTTCG‑CGTTTTCGGGCTTTG‑GCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCg < 3:527831/151‑1 (MQ=14) gATCCAGCTGTTCATCTGGCTGCGCTTGCGCCGGGTGCTGGGCG‑GGTTTTGGGGCGTTC‑GCGCGGGCAATAGCGGCTGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc < 5:461335/151‑1 (MQ=9) gATCAACCTTTTCATCTGGATCCGCCCTACCCGGTTGCTGTTCG‑CGGTTTCGAGCTCTG‑GCGCGTGCAATAGCGGCGTCGACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc < 7:356479/151‑1 (MQ=14) aaCCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGATTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGCCTTAGCGCGGATAGAACTGATATTCTGGATAGAAATAAGCCTGTTTCTGTTCCAGCTTGCgaaattt > 6:1492168/1‑144 (MQ=14) aCCTGTTCTTCTGGCTCCGCATTACCCGGGTGCTGTTCC‑CGTTTTCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTgg < 7:792530/151‑1 (MQ=255) gctcttcttcTGGCTCGGCAGCTCCCGGTAGCTGTTCC‑CGTTTGCTGGCCTGT‑GCTCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGc < 3:1346415/147‑1 (MQ=14) cTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCTGCTTCGACGGCAGCTATGAGCCGATAGAACTATTGTTATGGATCGGAATTAGCATGTTGATGTTCCAGATTGCGAGATTTgta > 6:542384/1‑148 (MQ=255) gTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGGTTGCGCGCTTTG‑GCTCGGGCGATAGct > 1:1542451/1‑64 (MQ=255) tcttctGGGTCCTTATTAGCTTGTTGCTGTGCG‑CGTTTGTTGGCTTTG‑GCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACgg < 8:1246433/150‑1 (MQ=14) tctGGCTCCGCATTAGCCTGTTGCTGGTCC‑CGTTTGCGCGCTTTG‑GCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc < 1:1265168/149‑1 (MQ=255) ggctcgtctttAGCCTTTTGCTGTGCG‑GGTTTGTGGGCGTGT‑GCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa < 2:1207970/141‑1 (MQ=11) gccTCCGCATCAGCCTGGTGCTGGGCG‑CGTTTGCTGGCCTTC‑GCGCGGGCAATAGCGGCGGCGACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAg < 3:314836/149‑1 (MQ=14) ccTCCGCAACAGCCTGGTGCTGGTCC‑CGTTTGCGCGCGTTG‑GCGCGGGCAATAGCCGCGTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc < 1:844673/150‑1 (MQ=14) cTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCGATAGCTGCTTCAAcg > 1:1851437/1‑64 (MQ=255) tCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCTGCTTCGACGGCGGGTTTCCGGGGATCGCCAAGTTTTGCTGCGTCGGTAGTATCCTGTTGGTGTTCCTGGTTGCCTCGTTTCTCGCGGGCGATACCgg > 1:368061/1‑151 (MQ=255) ccGCATGAGCCTGCTGCTGGTCG‑CGTTTGCGGGCTTGT‑GCGCGGGCAATAGCGGCGTCTACGGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGc < 2:1387973/151‑1 (MQ=14) aTTAGACGGTTGCTGTTCA‑CCTTTTCGTTATTTG‑TCTTTGGCTATAGCTGGCTCTTCGGATGTTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg < 2:1514323/151‑1 (MQ=9) ttAGCCTTTTGCTGTTCG‑CGTTTGCTGGCTTTT‑GCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc < 8:101599/149‑1 (MQ=14) gcccccGGGTGCTGGGCC‑CGCTTGCGTGCTTTG‑GCGCGGGCAATACCGGCTTCGACGGCCGCGTTGCGCGGATCGACCTCTGCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGa < 1:1353730/147‑1 (MQ=11) agctgtttGCTGTTCG‑GGTTTTTTTGCTTTT‑GCTCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCGTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc < 2:1590883/144‑1 (MQ=14) ccttgtgctgggcgggTTTGCGGGCGTGC‑GCGCGGGCAATAGCCGCGGCAACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 5:846060/136‑1 (MQ=11) ggtGCTGTTCG‑TGATTGGGCGCTTTG‑GCTCGGGGAATCGCGTCTGCGCCGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc < 5:490184/149‑1 (MQ=14) cgggctgcccc‑cGTTTGCGTGCGTTG‑CCGCGGGCACTAGCCGCTTGGCCGGCAGGTTTGCGCGGATCACCCGGGTGCTCTTGCGCGCCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc < 5:1535369/142‑1 (MQ=9) gCTGTGCC‑CCTTTGATGGCGTTC‑GCGCGGGCAATAGCGGCTGCTACGGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt < 1:1692924/151‑1 (MQ=11) gggcgcGTTTGCGGGCGTGG‑GCTCGGGCAATAGCCGCTTCCACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgc < 3:1228108/145‑1 (MQ=11) gcc‑cGCTTCCGAGCTTGC‑GCGCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg < 5:841894/150‑1 (MQ=11) cgggTTTGCTCGCGTGC‑GCGCGGGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCgg < 5:1185799/148‑1 (MQ=11) ccgcgtGCGCGCTTTT‑GCTCGCCCAAGAGCGGCTTCGACCGCGCCTTTGCGCTGATCCCCGTCGTCGTCTGGCGCTGCTTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa < 5:94287/146‑1 (MQ=11) tGCGCGCTTTC‑GCGCGGGCCAGCGCCGCGTCGACGGCGTCTTTGGGCGGATGTACCTGGTGGTGTGGCTCCGAAGTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg < 3:899605/149‑1 (MQ=11) ggggcTTTG‑GCGCGGGCAATAGCCGCGGCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAcc < 7:1456359/147‑1 (MQ=14) cgcTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACATCTTGTTCTGGGTCGTAATTATCCTGAAACATATCAAGCTTGAGGGCTTTGGAAAGGGCGATAACAGATTAGAAGGACTCTTTGCGAGGAtaatcatgt > 2:603403/1‑143 (MQ=2) gcTTTG‑GCTCGGGCAATAGCTGCTTCGACGGCGGGTTTACGAGGATCGACAACTTGTTCTGGGTCGTAATTATCCTGTTGATGTTCCAGATTGATAGGTTTGGCGAGGTCTATAGATACTTCGAATGCAGTTTTGCGTGGATCgggaaggg > 8:560434/1‑144 (MQ=255) tCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACCTCGTCTTCTgct > 4:936137/1‑149 (MQ=255) | GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGT > DH1/2169429‑2169727 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |