Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5770TG28.1% 278.3 / 73.5 262R661R (CGA→CGC) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base T (45/137);  new base G (9/62);  total (63/199)
Fisher's exact test for biased strand distribution p-value = 4.04e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 267 total aligned reads displayed.

GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGT  >  DH1/2169429‑2169727
                                                                                                                                                      |                                                                                                                                                      
gTTCTTCTGGTACCTCATTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCt                                                                                                                                                        <  2:305101/149‑1 (MQ=255)
gTTCTTCTGGTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCt                                                                                                                                                        <  4:1056434/149‑1 (MQ=255)
gTTCTTCTGGGACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTc                                                                                                                                                       <  7:134144/150‑1 (MQ=255)
  tcttctGGTTCCGGATAAGCCTGCTGCTGTTCCTGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCgg                                                                                                                                                     <  4:336184/150‑1 (MQ=25)
  tcttctGGTACGGGATTAGCCTGTTGCTGTTCCCGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCgg                                                                                                                                                     <  7:501112/150‑1 (MQ=255)
  tcttctGGGACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCgg                                                                                                                                                     <  1:1001840/150‑1 (MQ=255)
      atGGTACGGCATTAGCCTGTTGCTGTTCGTGGTTGGGTGCTTTGGCGCGTGCAATAGGCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCaa                                                                                                                                                 <  1:1768040/149‑1 (MQ=17)
        ggTTCCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCaa                                                                                                                                                 <  4:475030/148‑1 (MQ=255)
           aCCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCg                                                                                                                                            <  1:314719/150‑1 (MQ=255)
           aCCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCg                                                                                                                                            <  5:1685034/150‑1 (MQ=255)
            ccGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCAGCTTAGACGCCCGCTTAGCCCCGCTAGACATCTTCGTCTCGCTCCTCATTAGCCGGGTGCTGTTCC‑ACATTGAGCGCTGTG‑gggcgggcgagaggggg                                                                                                                                          >  7:1657025/1‑142 (MQ=2)
             cGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTGTTCTGGGTAGGCATTATCAGGTGGCGGGTCC‑AGTTGCCTCTCTTTG‑GCCCggggcgtatcgcct                                                                                                                                         >  5:283320/1‑140 (MQ=9)
               cATTAGCCTTTTTCTTTTCCCGCTTGCGTGCGTTCGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTc                                                                                                                                       <  4:710546/151‑1 (MQ=21)
                aTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTGATCGGAGATCCGGCGGGTATTCTAACACGGCTTTAGAGTGTTGATGTTGC‑CGTTTGCGCGCTTTG‑GGTAGGGAAATAGCGGCTTCg                                                                                                                                      >  6:1535079/1‑151 (MQ=9)
                 ttAGCCTGTTGCTGGGCCCGCTTGCGTGCTTGGGCGCGGGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCg                                                                                                                                      <  6:1097337/150‑1 (MQ=25)
                  tAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCAGCATTAGAAAGTTGATGTTCG‑CGATTGCGCGCTTTG‑GCTAGGGAAATAGAGGCTTCGAc                                                                                                                                    >  6:857919/1‑151 (MQ=17)
                    gCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGGATTGCGCGACTCCACGTGTTATGAGCGGTCAGCATAATCGGGTTGCTGTTCC‑CTCTTGCGCGGTTTG‑GAACGGGCGATAGCGGCTTCGCcgg                                                                                                                                  >  5:1042589/1‑151 (MQ=9)
                     ccTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTAATCTACTCGATCAGCGTTAGACTGTTTATGTTAC‑AGTTTGAGTGCTTTG‑GCTCGGGAAATatagtattagaaggc                                                                                                                                 >  6:94029/1‑137 (MQ=9)
                     ccTGTTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                                 <  3:707615/151‑1 (MQ=255)
                        gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGAAAACACCAGAGCTTCTGGGTCGGCAATAGACTTTAGCTTTTAC‑ATGATGAGCGGTTTG‑GCACGGTCAATAAAACATTCGAcggcggg                                                                                                                              >  4:440914/1‑150 (MQ=2)
                          tGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCAGCTGCGAAGGCCGGGTTGGGCGGATAGACGTGTTATTATTGATACGCATTAGCCGGTTGCTGTTAC‑ATTTTAAGAACTTTG‑GCTCGGGCAATAGCGGCtgggaggggggggg                                                                                                                            >  2:943594/1‑138 (MQ=2)
                          tGCTGTTCCAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCt                                                                                                                             <  8:1431946/150‑1 (MQ=255)
                           gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                           <  8:1716747/151‑1 (MQ=255)
                           gCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                           <  3:433696/151‑1 (MQ=255)
                              gttcgtgCTTTCTTGCTTTCGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                                                                                        <  2:688728/145‑1 (MQ=17)
                              gTTCCCGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                                                                                        <  1:1479651/151‑1 (MQ=255)
                              gTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg                                                                                                                          <  1:731968/149‑1 (MQ=255)
                               ttCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCCACGGCAGCTTTCGGCCCAACGACCTGTTCATATGCATAGTCATTAGCCTCTTTCTGGTGC‑AGCTTGAGCCATATG‑TATCGGGGGATTGCGGCTTCGAcgggctcggtcggg                                                                                                                       >  1:1650822/1‑140 (MQ=2)
                               gtCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc                                                                                                                       <  1:557375/150‑1 (MQ=255)
                                  cAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                                                                                                                    <  8:78167/151‑1 (MQ=255)
                                   aGCTTTAGTGCGTTGGCGCGTGCAATAGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGCTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTC‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                   <  3:1632222/151‑1 (MQ=17)
                                   aGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGCCGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGAGCTTTG‑GCTCGGGCAATAGCGGCGTCGCGGGGGGCTGTGGGCGGAt                                                                                                                   >  5:1403878/1‑151 (MQ=25)
                                    gcttttttGCTTTTGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                   <  6:68498/143‑1 (MQ=255)
                                    ccTTGCGTGCCTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                                  <  3:816167/150‑1 (MQ=255)
                                       tGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGATTTGCGAGGATCAACCTATTCTTCTCGGTACGCATTAGCCTGTTGCTGTTCC‑AGATTGAGAGCTTTG‑GCGCGGGCAATATATGCATAAACGGCAGCTTTGCGGGGAtgcac                                                                                                               >  4:593615/1‑147 (MQ=2)
                                        gctggccttcgcgcGTGCAATAGCCGCGGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc                                                                                                               <  4:1791239/140‑1 (MQ=17)
                                        cccggcctgcgcgcGGGCAATAGCCGCTTGTACTGCCGCTTTGCGCGGCTCAACCTGTTCTTCTTCATGCGCATTAGGTTGTTCCTGTTCC‑CGTTTGCGCGCTTTT‑GCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGAcc                                                                                                              <  1:257254/141‑1 (MQ=9)
                                           tGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCACCTTTGCGCGTATAGACCTGTTATTCTGTATACGGATTAGCAGGTTGCTGTTCA‑CGATTGAGCGCTTTG‑GCAAGGGCAATAGCGGCTTCGACGGCTCGGTTGCGCggctgggagggt                                                                                                           >  2:383761/1‑141 (MQ=9)
                                            gCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                          <  4:1572619/151‑1 (MQ=255)
                                              gttGGCGCGGGCAATAGCCGCTTCGAAGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttgt                                                                                                        <  7:473597/150‑1 (MQ=255)
                                                tGGCGCGTGCAATAGCCGCGGCTACTGCAGATTTGCGCGGAGCAACGTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCG‑CGTTTGCGGGCTTTG‑GCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTgttgtt                                                                                                       <  4:1456701/150‑1 (MQ=14)
                                                 ggggcgTGGAATAGCCGCTTGTACTGCAGCTTTGCGCTGTTCTACCTGATCTTCTTGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTGG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                     <  8:1549776/148‑1 (MQ=14)
                                                 ggCGCGTGCAATAGCCGCTTCTACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                     <  7:1832304/151‑1 (MQ=255)
                                                 ggCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                     <  5:1266727/151‑1 (MQ=255)
                                                 ggCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGATCCGCATTAGCCGGATGCTGTTCC‑CGGTTGCGCGCTGTG‑CCTCGCGATATAGCGGCTTCGACGGCGGCGTTGCGCGGCTCGACCTgttgttgt                                                                                                     >  3:192060/1‑149 (MQ=18)
                                                  gcgcGTGCAATAGCCGCTTCTACGTCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGGGCTTTT‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                    <  4:1199443/151‑1 (MQ=255)
                                                  gcgcGTGCAATAGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                    <  8:675976/151‑1 (MQ=255)
                                                  gcgcGGGCAAGAGCCGCTTCTACTGGCGCTGAGCGCGGCTCATCCTCTTGTGCTTCATCGGCATTCCCCTCTGCCGGTTGC‑CG‑TTGCGCGGGGTGCGCGCGGGCAATAGCGGCGTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                    <  7:1777129/151‑1 (MQ=2)
                                                        gCAATAGCCGCGGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg                                                                                              <  6:777331/151‑1 (MQ=255)
                                                          aaTAGCCGCGGCTACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCa                                                                                            <  6:1122800/151‑1 (MQ=14)
                                                            tAGCCGCGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCC‑AGCTTGCGTGCTTTG‑GCGCGGGCAATAGCAGCTTAGCCGGCCCCGTTGCCAGTCGCGACCGGTTATTCTCGCTCGGCttt                                                                                          >  3:1711094/1‑151 (MQ=17)
                                                               gaggggcaactgccgCTTTGCGCTGATCTACCTGTTCTTATGGCTCGTCTTTATCCTGTTGCTGTTCG‑GGTTTTCGGGCTTTG‑GCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGc                                                                                       <  8:1872224/137‑1 (MQ=14)
                                                                cgcgTCGTCTGCAGCTTCGGGCGGCCCCACCTGTCCTTCTGGCTCCTCACTAGCCTTCTGCTGCGGC‑CGCTTGCCCGCTGTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGcc                                                                                      <  4:193050/151‑1 (MQ=2)
                                                                cGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑AGGTTGCGCGCTTTG‑GCGCGGGCGATAGctg                                                                                                                                           >  5:1465049/1‑96 (MQ=11)
                                                                  gtgcatatggaGCTTTTCGCTTTTCTACGTGTTCTTCTGGCTCCTCATTAGCCTGTTGCTGTTCG‑CGTTTTCGGGCTTTG‑GCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGcc                                                                                      <  8:548424/139‑1 (MQ=14)
                                                                   ggctactgccgCTGTGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCG‑CGTTTGCTCGCTTTG‑GCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGt                                                                                   <  6:139902/141‑1 (MQ=14)
                                                                     ccactgccgCTTTGCGCTGAGCCACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGGTCC‑CGTTTGCGCGCTTTC‑GCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg                                                                                 <  1:984476/143‑1 (MQ=14)
                                                                     cGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg                                                                                 <  3:1775662/151‑1 (MQ=255)
                                                                      gACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc                                                                                <  8:111340/151‑1 (MQ=255)
                                                                       aggcgaGCTGTGCGCTGCTCATCGTGTTCTTCGGGTGCCGGACTCGCGTGTTGC‑GTTCCGAGCTTGCTGGCCTTC‑GCTCGGGCAATAGCGGCTTCCACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCt                                                                               <  3:1473072/146‑1 (MQ=2)
                                                                        ctttcgCTTTGCGCGGATCTTCCTCTGTTTCTTGCTCGTTTTTATCCTGGTGCTGGTCG‑GGTTTTTTGGCCTTT‑GCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc                                                                                <  6:20630/144‑1 (MQ=2)
                                                                          gCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCAATAGCCGGGTGCTGTTCC‑CGATTGCGCCCTTTG‑GCTCGGGCAATAGAGGCTTCGACGGCGGCTTTCCTCGGATCGACCTGTTGTTCTGGGTCGGCTGTGGCGTGTTGCGGtg                                                                            >  7:1047844/1‑150 (MQ=14)
                                                                             gcgtgccggggctccaCCTGTTCTGCTGGCTCCGCATGAGCCTGCTGCTGGGCC‑CGTTTTCGGGCGTTT‑GCTCGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                         <  5:1651694/136‑1 (MQ=14)
                                                                              tttttcgagtatttcccTCTTCTTCTGTCTTCGGATTTTCCTGTTGCTGGGCG‑GGTTTTTTGGCTTTT‑GCGCGGGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                         <  4:824380/135‑1 (MQ=2)
                                                                              gttttCGCGGATGATCCTGTTCTTGTGGCTCGTCATTAGCCTGTTGCTGTTCG‑GGTTTGAGGGCGTTG‑GCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                         <  8:319719/149‑1 (MQ=14)
                                                                               tttGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGATCGGCATTAGCCTGTTGCTGTTCCAgg                                                                       >  7:752338/1‑150 (MQ=255)
                                                                                gtGCGCGGAGCCACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTT‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAg                                                                        <  5:652277/148‑1 (MQ=255)
                                                                                    gcgTATCAACCTGTTCTTCTTGCTCCGCATTAGCCTGGTGCTGTTCG‑CGTTTTCGGGCTTTG‑GCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCg                                                                  <  3:527831/151‑1 (MQ=14)
                                                                                       gATCCAGCTGTTCATCTGGCTGCGCTTGCGCCGGGTGCTGGGCG‑GGTTTTGGGGCGTTC‑GCGCGGGCAATAGCGGCTGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc                                                               <  5:461335/151‑1 (MQ=9)
                                                                                       gATCAACCTTTTCATCTGGATCCGCCCTACCCGGTTGCTGTTCG‑CGGTTTCGAGCTCTG‑GCGCGTGCAATAGCGGCGTCGACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc                                                               <  7:356479/151‑1 (MQ=14)
                                                                                           aaCCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGATTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGCCTTAGCGCGGATAGAACTGATATTCTGGATAGAAATAAGCCTGTTTCTGTTCCAGCTTGCgaaattt                                                            >  6:1492168/1‑144 (MQ=14)
                                                                                            aCCTGTTCTTCTGGCTCCGCATTACCCGGGTGCTGTTCC‑CGTTTTCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTgg                                                          <  7:792530/151‑1 (MQ=255)
                                                                                             gctcttcttcTGGCTCGGCAGCTCCCGGTAGCTGTTCC‑CGTTTGCTGGCCTGT‑GCTCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGc                                                         <  3:1346415/147‑1 (MQ=14)
                                                                                              cTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCTGCTTCGACGGCAGCTATGAGCCGATAGAACTATTGTTATGGATCGGAATTAGCATGTTGATGTTCCAGATTGCGAGATTTgta                                                         >  6:542384/1‑148 (MQ=255)
                                                                                                gTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGGTTGCGCGCTTTG‑GCTCGGGCGATAGct                                                                                                                                            >  1:1542451/1‑64 (MQ=255)
                                                                                                  tcttctGGGTCCTTATTAGCTTGTTGCTGTGCG‑CGTTTGTTGGCTTTG‑GCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACgg                                                     <  8:1246433/150‑1 (MQ=14)
                                                                                                     tctGGCTCCGCATTAGCCTGTTGCTGGTCC‑CGTTTGCGCGCTTTG‑GCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc                                                   <  1:1265168/149‑1 (MQ=255)
                                                                                                        ggctcgtctttAGCCTTTTGCTGTGCG‑GGTTTGTGGGCGTGT‑GCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa                                               <  2:1207970/141‑1 (MQ=11)
                                                                                                        gccTCCGCATCAGCCTGGTGCTGGGCG‑CGTTTGCTGGCCTTC‑GCGCGGGCAATAGCGGCGGCGACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAg                                              <  3:314836/149‑1 (MQ=14)
                                                                                                         ccTCCGCAACAGCCTGGTGCTGGTCC‑CGTTTGCGCGCGTTG‑GCGCGGGCAATAGCCGCGTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc                                             <  1:844673/150‑1 (MQ=14)
                                                                                                          cTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCGATAGCTGCTTCAAcg                                                                                                                                   >  1:1851437/1‑64 (MQ=255)
                                                                                                           tCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCTGCTTCGACGGCGGGTTTCCGGGGATCGCCAAGTTTTGCTGCGTCGGTAGTATCCTGTTGGTGTTCCTGGTTGCCTCGTTTCTCGCGGGCGATACCgg                                           >  1:368061/1‑151 (MQ=255)
                                                                                                            ccGCATGAGCCTGCTGCTGGTCG‑CGTTTGCGGGCTTGT‑GCGCGGGCAATAGCGGCGTCTACGGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGc                                          <  2:1387973/151‑1 (MQ=14)
                                                                                                                aTTAGACGGTTGCTGTTCA‑CCTTTTCGTTATTTG‑TCTTTGGCTATAGCTGGCTCTTCGGATGTTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                      <  2:1514323/151‑1 (MQ=9)
                                                                                                                 ttAGCCTTTTGCTGTTCG‑CGTTTGCTGGCTTTT‑GCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                       <  8:101599/149‑1 (MQ=14)
                                                                                                                 gcccccGGGTGCTGGGCC‑CGCTTGCGTGCTTTG‑GCGCGGGCAATACCGGCTTCGACGGCCGCGTTGCGCGGATCGACCTCTGCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGa                                     <  1:1353730/147‑1 (MQ=11)
                                                                                                                   agctgtttGCTGTTCG‑GGTTTTTTTGCTTTT‑GCTCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCGTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc                                    <  2:1590883/144‑1 (MQ=14)
                                                                                                                      ccttgtgctgggcgggTTTGCGGGCGTGC‑GCGCGGGCAATAGCCGCGGCAACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                                 <  5:846060/136‑1 (MQ=11)
                                                                                                                        ggtGCTGTTCG‑TGATTGGGCGCTTTG‑GCTCGGGGAATCGCGTCTGCGCCGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc                              <  5:490184/149‑1 (MQ=14)
                                                                                                                        cgggctgcccc‑cGTTTGCGTGCGTTG‑CCGCGGGCACTAGCCGCTTGGCCGGCAGGTTTGCGCGGATCACCCGGGTGCTCTTGCGCGCCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc                              <  5:1535369/142‑1 (MQ=9)
                                                                                                                           gCTGTGCC‑CCTTTGATGGCGTTC‑GCGCGGGCAATAGCGGCTGCTACGGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt                           <  1:1692924/151‑1 (MQ=11)
                                                                                                                               gggcgcGTTTGCGGGCGTGG‑GCTCGGGCAATAGCCGCTTCCACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgc                         <  3:1228108/145‑1 (MQ=11)
                                                                                                                                gcc‑cGCTTCCGAGCTTGC‑GCGCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg                      <  5:841894/150‑1 (MQ=11)
                                                                                                                                  cgggTTTGCTCGCGTGC‑GCGCGGGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCgg                     <  5:1185799/148‑1 (MQ=11)
                                                                                                                                   ccgcgtGCGCGCTTTT‑GCTCGCCCAAGAGCGGCTTCGACCGCGCCTTTGCGCTGATCCCCGTCGTCGTCTGGCGCTGCTTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                    <  5:94287/146‑1 (MQ=11)
                                                                                                                                        tGCGCGCTTTC‑GCGCGGGCCAGCGCCGCGTCGACGGCGTCTTTGGGCGGATGTACCTGGTGGTGTGGCTCCGAAGTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg                 <  3:899605/149‑1 (MQ=11)
                                                                                                                                          ggggcTTTG‑GCGCGGGCAATAGCCGCGGCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAcc              <  7:1456359/147‑1 (MQ=14)
                                                                                                                                            cgcTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACATCTTGTTCTGGGTCGTAATTATCCTGAAACATATCAAGCTTGAGGGCTTTGGAAAGGGCGATAACAGATTAGAAGGACTCTTTGCGAGGAtaatcatgt           >  2:603403/1‑143 (MQ=2)
                                                                                                                                             gcTTTG‑GCTCGGGCAATAGCTGCTTCGACGGCGGGTTTACGAGGATCGACAACTTGTTCTGGGTCGTAATTATCCTGTTGATGTTCCAGATTGATAGGTTTGGCGAGGTCTATAGATACTTCGAATGCAGTTTTGCGTGGATCgggaaggg          >  8:560434/1‑144 (MQ=255)
                                                                                                                                                      tCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACCTCGTCTTCTgct  >  4:936137/1‑149 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGT  >  DH1/2169429‑2169727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑