Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5770TG28.1% 278.3 / 73.5 262R661R (CGA→CGCrsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base T (45/137);  new base G (9/62);  total (63/199)
Fisher's exact test for biased strand distribution p-value = 4.04e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 267 total aligned reads displayed.

GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGT  >  DH1/2169429‑2169727
                                                                                                                                                      |                                                                                                                                                      
gTTCTTCTGGTACCTCATTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCt                                                                                                                                                        <  2:305101/149‑1 (MQ=255)
gTTCTTCTGGTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCt                                                                                                                                                        <  4:1056434/149‑1 (MQ=255)
gTTCTTCTGGGACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTc                                                                                                                                                       <  7:134144/150‑1 (MQ=255)
  tcttctGGTTCCGGATAAGCCTGCTGCTGTTCCTGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCgg                                                                                                                                                     <  4:336184/150‑1 (MQ=25)
  tcttctGGTACGGGATTAGCCTGTTGCTGTTCCCGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCgg                                                                                                                                                     <  7:501112/150‑1 (MQ=255)
  tcttctGGGACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCgg                                                                                                                                                     <  1:1001840/150‑1 (MQ=255)
      atGGTACGGCATTAGCCTGTTGCTGTTCGTGGTTGGGTGCTTTGGCGCGTGCAATAGGCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCaa                                                                                                                                                 <  1:1768040/149‑1 (MQ=17)
        ggTTCCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCaa                                                                                                                                                 <  4:475030/148‑1 (MQ=255)
           aCCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCg                                                                                                                                            <  1:314719/150‑1 (MQ=255)
           aCCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCg                                                                                                                                            <  5:1685034/150‑1 (MQ=255)
            ccGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCAGCTTAGACGCCCGCTTAGCCCCGCTAGACATCTTCGTCTCGCTCCTCATTAGCCGGGTGCTGTTCCACATTGAGCGCTGTGgggcgggcgagaggggg                                                                                                                                          >  7:1657025/1‑142 (MQ=2)
             cGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTGTTCTGGGTAGGCATTATCAGGTGGCGGGTCCAGTTGCCTCTCTTTGGCCCggggcgtatcgcct                                                                                                                                         >  5:283320/1‑140 (MQ=9)
               cATTAGCCTTTTTCTTTTCCCGCTTGCGTGCGTTCGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTc                                                                                                                                       <  4:710546/151‑1 (MQ=21)
                aTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTGATCGGAGATCCGGCGGGTATTCTAACACGGCTTTAGAGTGTTGATGTTGCCGTTTGCGCGCTTTGGGTAGGGAAATAGCGGCTTCg                                                                                                                                      >  6:1535079/1‑151 (MQ=9)
                 ttAGCCTGTTGCTGGGCCCGCTTGCGTGCTTGGGCGCGGGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                                      <  6:1097337/150‑1 (MQ=25)
                  tAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCAGCATTAGAAAGTTGATGTTCGCGATTGCGCGCTTTGGCTAGGGAAATAGAGGCTTCGAc                                                                                                                                    >  6:857919/1‑151 (MQ=17)
                    gCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGGATTGCGCGACTCCACGTGTTATGAGCGGTCAGCATAATCGGGTTGCTGTTCCCTCTTGCGCGGTTTGGAACGGGCGATAGCGGCTTCGCcgg                                                                                                                                  >  5:1042589/1‑151 (MQ=9)
                     ccTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTAATCTACTCGATCAGCGTTAGACTGTTTATGTTACAGTTTGAGTGCTTTGGCTCGGGAAATatagtattagaaggc                                                                                                                                 >  6:94029/1‑137 (MQ=9)
                     ccTGTTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                                 <  3:707615/151‑1 (MQ=255)
                        gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGAAAACACCAGAGCTTCTGGGTCGGCAATAGACTTTAGCTTTTACATGATGAGCGGTTTGGCACGGTCAATAAAACATTCGAcggcggg                                                                                                                              >  4:440914/1‑150 (MQ=2)
                          tGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCAGCTGCGAAGGCCGGGTTGGGCGGATAGACGTGTTATTATTGATACGCATTAGCCGGTTGCTGTTACATTTTAAGAACTTTGGCTCGGGCAATAGCGGCtgggaggggggggg                                                                                                                            >  2:943594/1‑138 (MQ=2)
                          tGCTGTTCCAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCt                                                                                                                             <  8:1431946/150‑1 (MQ=255)
                           gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                           <  8:1716747/151‑1 (MQ=255)
                           gCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                           <  3:433696/151‑1 (MQ=255)
                              gttcgtgCTTTCTTGCTTTCGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                                                                                        <  2:688728/145‑1 (MQ=17)
                              gTTCCCGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                                                                                        <  1:1479651/151‑1 (MQ=255)
                              gTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg                                                                                                                          <  1:731968/149‑1 (MQ=255)
                               ttCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCCACGGCAGCTTTCGGCCCAACGACCTGTTCATATGCATAGTCATTAGCCTCTTTCTGGTGCAGCTTGAGCCATATGTATCGGGGGATTGCGGCTTCGAcgggctcggtcggg                                                                                                                       >  1:1650822/1‑140 (MQ=2)
                               gtCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc                                                                                                                       <  1:557375/150‑1 (MQ=255)
                                  cAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                                                                                                                    <  8:78167/151‑1 (MQ=255)
                                   aGCTTTAGTGCGTTGGCGCGTGCAATAGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGCTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                   <  3:1632222/151‑1 (MQ=17)
                                   aGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGCCGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGCCGGTTGCTGTTCCCGTTTGCGAGCTTTGGCTCGGGCAATAGCGGCGTCGCGGGGGGCTGTGGGCGGAt                                                                                                                   >  5:1403878/1‑151 (MQ=25)
                                    gcttttttGCTTTTGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                   <  6:68498/143‑1 (MQ=255)
                                    ccTTGCGTGCCTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                                  <  3:816167/150‑1 (MQ=255)
                                       tGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGATTTGCGAGGATCAACCTATTCTTCTCGGTACGCATTAGCCTGTTGCTGTTCCAGATTGAGAGCTTTGGCGCGGGCAATATATGCATAAACGGCAGCTTTGCGGGGAtgcac                                                                                                               >  4:593615/1‑147 (MQ=2)
                                        gctggccttcgcgcGTGCAATAGCCGCGGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc                                                                                                               <  4:1791239/140‑1 (MQ=17)
                                        cccggcctgcgcgcGGGCAATAGCCGCTTGTACTGCCGCTTTGCGCGGCTCAACCTGTTCTTCTTCATGCGCATTAGGTTGTTCCTGTTCCCGTTTGCGCGCTTTTGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGAcc                                                                                                              <  1:257254/141‑1 (MQ=9)
                                           tGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCACCTTTGCGCGTATAGACCTGTTATTCTGTATACGGATTAGCAGGTTGCTGTTCACGATTGAGCGCTTTGGCAAGGGCAATAGCGGCTTCGACGGCTCGGTTGCGCggctgggagggt                                                                                                           >  2:383761/1‑141 (MQ=9)
                                            gCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                          <  4:1572619/151‑1 (MQ=255)
                                              gttGGCGCGGGCAATAGCCGCTTCGAAGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttgt                                                                                                        <  7:473597/150‑1 (MQ=255)
                                                tGGCGCGTGCAATAGCCGCGGCTACTGCAGATTTGCGCGGAGCAACGTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCGCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTgttgtt                                                                                                       <  4:1456701/150‑1 (MQ=14)
                                                 ggggcgTGGAATAGCCGCTTGTACTGCAGCTTTGCGCTGTTCTACCTGATCTTCTTGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTGGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                     <  8:1549776/148‑1 (MQ=14)
                                                 ggCGCGTGCAATAGCCGCTTCTACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                     <  7:1832304/151‑1 (MQ=255)
                                                 ggCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                     <  5:1266727/151‑1 (MQ=255)
                                                 ggCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGATCCGCATTAGCCGGATGCTGTTCCCGGTTGCGCGCTGTGCCTCGCGATATAGCGGCTTCGACGGCGGCGTTGCGCGGCTCGACCTgttgttgt                                                                                                     >  3:192060/1‑149 (MQ=18)
                                                  gcgcGTGCAATAGCCGCTTCTACGTCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGCCGGTTGCTGTTCCCGTTTGCGGGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                    <  4:1199443/151‑1 (MQ=255)
                                                  gcgcGTGCAATAGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                    <  8:675976/151‑1 (MQ=255)
                                                  gcgcGGGCAAGAGCCGCTTCTACTGGCGCTGAGCGCGGCTCATCCTCTTGTGCTTCATCGGCATTCCCCTCTGCCGGTTGCCGTTGCGCGGGGTGCGCGCGGGCAATAGCGGCGTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                    <  7:1777129/151‑1 (MQ=2)
                                                        gCAATAGCCGCGGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg                                                                                              <  6:777331/151‑1 (MQ=255)
                                                          aaTAGCCGCGGCTACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCa                                                                                            <  6:1122800/151‑1 (MQ=14)
                                                            tAGCCGCGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCAGCTTAGCCGGCCCCGTTGCCAGTCGCGACCGGTTATTCTCGCTCGGCttt                                                                                          >  3:1711094/1‑151 (MQ=17)
                                                               gaggggcaactgccgCTTTGCGCTGATCTACCTGTTCTTATGGCTCGTCTTTATCCTGTTGCTGTTCGGGTTTTCGGGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGc                                                                                       <  8:1872224/137‑1 (MQ=14)
                                                                cgcgTCGTCTGCAGCTTCGGGCGGCCCCACCTGTCCTTCTGGCTCCTCACTAGCCTTCTGCTGCGGCCGCTTGCCCGCTGTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGcc                                                                                      <  4:193050/151‑1 (MQ=2)
                                                                cGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGGTTGCGCGCTTTGGCGCGGGCGATAGctg                                                                                                                                           >  5:1465049/1‑96 (MQ=11)
                                                                  gtgcatatggaGCTTTTCGCTTTTCTACGTGTTCTTCTGGCTCCTCATTAGCCTGTTGCTGTTCGCGTTTTCGGGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGcc                                                                                      <  8:548424/139‑1 (MQ=14)
                                                                   ggctactgccgCTGTGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCGCGTTTGCTCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGt                                                                                   <  6:139902/141‑1 (MQ=14)
                                                                     ccactgccgCTTTGCGCTGAGCCACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGGTCCCGTTTGCGCGCTTTCGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg                                                                                 <  1:984476/143‑1 (MQ=14)
                                                                     cGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg                                                                                 <  3:1775662/151‑1 (MQ=255)
                                                                      gACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc                                                                                <  8:111340/151‑1 (MQ=255)
                                                                       aggcgaGCTGTGCGCTGCTCATCGTGTTCTTCGGGTGCCGGACTCGCGTGTTGCGTTCCGAGCTTGCTGGCCTTCGCTCGGGCAATAGCGGCTTCCACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCt                                                                               <  3:1473072/146‑1 (MQ=2)
                                                                        ctttcgCTTTGCGCGGATCTTCCTCTGTTTCTTGCTCGTTTTTATCCTGGTGCTGGTCGGGTTTTTTGGCCTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc                                                                                <  6:20630/144‑1 (MQ=2)
                                                                          gCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCAATAGCCGGGTGCTGTTCCCGATTGCGCCCTTTGGCTCGGGCAATAGAGGCTTCGACGGCGGCTTTCCTCGGATCGACCTGTTGTTCTGGGTCGGCTGTGGCGTGTTGCGGtg                                                                            >  7:1047844/1‑150 (MQ=14)
                                                                             gcgtgccggggctccaCCTGTTCTGCTGGCTCCGCATGAGCCTGCTGCTGGGCCCGTTTTCGGGCGTTTGCTCGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                         <  5:1651694/136‑1 (MQ=14)
                                                                              tttttcgagtatttcccTCTTCTTCTGTCTTCGGATTTTCCTGTTGCTGGGCGGGTTTTTTGGCTTTTGCGCGGGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                         <  4:824380/135‑1 (MQ=2)
                                                                              gttttCGCGGATGATCCTGTTCTTGTGGCTCGTCATTAGCCTGTTGCTGTTCGGGTTTGAGGGCGTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                         <  8:319719/149‑1 (MQ=14)
                                                                               tttGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGATCGGCATTAGCCTGTTGCTGTTCCAgg                                                                       >  7:752338/1‑150 (MQ=255)
                                                                                gtGCGCGGAGCCACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAg                                                                        <  5:652277/148‑1 (MQ=255)
                                                                                    gcgTATCAACCTGTTCTTCTTGCTCCGCATTAGCCTGGTGCTGTTCGCGTTTTCGGGCTTTGGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCg                                                                  <  3:527831/151‑1 (MQ=14)
                                                                                       gATCCAGCTGTTCATCTGGCTGCGCTTGCGCCGGGTGCTGGGCGGGTTTTGGGGCGTTCGCGCGGGCAATAGCGGCTGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc                                                               <  5:461335/151‑1 (MQ=9)
                                                                                       gATCAACCTTTTCATCTGGATCCGCCCTACCCGGTTGCTGTTCGCGGTTTCGAGCTCTGGCGCGTGCAATAGCGGCGTCGACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc                                                               <  7:356479/151‑1 (MQ=14)
                                                                                           aaCCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGCCTTAGCGCGGATAGAACTGATATTCTGGATAGAAATAAGCCTGTTTCTGTTCCAGCTTGCgaaattt                                                            >  6:1492168/1‑144 (MQ=14)
                                                                                            aCCTGTTCTTCTGGCTCCGCATTACCCGGGTGCTGTTCCCGTTTTCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTgg                                                          <  7:792530/151‑1 (MQ=255)
                                                                                             gctcttcttcTGGCTCGGCAGCTCCCGGTAGCTGTTCCCGTTTGCTGGCCTGTGCTCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGc                                                         <  3:1346415/147‑1 (MQ=14)
                                                                                              cTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCAGCTATGAGCCGATAGAACTATTGTTATGGATCGGAATTAGCATGTTGATGTTCCAGATTGCGAGATTTgta                                                         >  6:542384/1‑148 (MQ=255)
                                                                                                gTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGCGCTTTGGCTCGGGCGATAGct                                                                                                                                            >  1:1542451/1‑64 (MQ=255)
                                                                                                  tcttctGGGTCCTTATTAGCTTGTTGCTGTGCGCGTTTGTTGGCTTTGGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACgg                                                     <  8:1246433/150‑1 (MQ=14)
                                                                                                     tctGGCTCCGCATTAGCCTGTTGCTGGTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc                                                   <  1:1265168/149‑1 (MQ=255)
                                                                                                        ggctcgtctttAGCCTTTTGCTGTGCGGGTTTGTGGGCGTGTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa                                               <  2:1207970/141‑1 (MQ=11)
                                                                                                        gccTCCGCATCAGCCTGGTGCTGGGCGCGTTTGCTGGCCTTCGCGCGGGCAATAGCGGCGGCGACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAg                                              <  3:314836/149‑1 (MQ=14)
                                                                                                         ccTCCGCAACAGCCTGGTGCTGGTCCCGTTTGCGCGCGTTGGCGCGGGCAATAGCCGCGTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc                                             <  1:844673/150‑1 (MQ=14)
                                                                                                          cTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCGATAGCTGCTTCAAcg                                                                                                                                   >  1:1851437/1‑64 (MQ=255)
                                                                                                           tCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGGTTTCCGGGGATCGCCAAGTTTTGCTGCGTCGGTAGTATCCTGTTGGTGTTCCTGGTTGCCTCGTTTCTCGCGGGCGATACCgg                                           >  1:368061/1‑151 (MQ=255)
                                                                                                            ccGCATGAGCCTGCTGCTGGTCGCGTTTGCGGGCTTGTGCGCGGGCAATAGCGGCGTCTACGGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGc                                          <  2:1387973/151‑1 (MQ=14)
                                                                                                                aTTAGACGGTTGCTGTTCACCTTTTCGTTATTTGTCTTTGGCTATAGCTGGCTCTTCGGATGTTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                      <  2:1514323/151‑1 (MQ=9)
                                                                                                                 ttAGCCTTTTGCTGTTCGCGTTTGCTGGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                       <  8:101599/149‑1 (MQ=14)
                                                                                                                 gcccccGGGTGCTGGGCCCGCTTGCGTGCTTTGGCGCGGGCAATACCGGCTTCGACGGCCGCGTTGCGCGGATCGACCTCTGCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGa                                     <  1:1353730/147‑1 (MQ=11)
                                                                                                                   agctgtttGCTGTTCGGGTTTTTTTGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCGTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc                                    <  2:1590883/144‑1 (MQ=14)
                                                                                                                      ccttgtgctgggcgggTTTGCGGGCGTGCGCGCGGGCAATAGCCGCGGCAACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                                 <  5:846060/136‑1 (MQ=11)
                                                                                                                        ggtGCTGTTCGTGATTGGGCGCTTTGGCTCGGGGAATCGCGTCTGCGCCGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc                              <  5:490184/149‑1 (MQ=14)
                                                                                                                        cgggctgcccccGTTTGCGTGCGTTGCCGCGGGCACTAGCCGCTTGGCCGGCAGGTTTGCGCGGATCACCCGGGTGCTCTTGCGCGCCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc                              <  5:1535369/142‑1 (MQ=9)
                                                                                                                           gCTGTGCCCCTTTGATGGCGTTCGCGCGGGCAATAGCGGCTGCTACGGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt                           <  1:1692924/151‑1 (MQ=11)
                                                                                                                               gggcgcGTTTGCGGGCGTGGGCTCGGGCAATAGCCGCTTCCACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgc                         <  3:1228108/145‑1 (MQ=11)
                                                                                                                                gcccGCTTCCGAGCTTGCGCGCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg                      <  5:841894/150‑1 (MQ=11)
                                                                                                                                  cgggTTTGCTCGCGTGCGCGCGGGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCgg                     <  5:1185799/148‑1 (MQ=11)
                                                                                                                                   ccgcgtGCGCGCTTTTGCTCGCCCAAGAGCGGCTTCGACCGCGCCTTTGCGCTGATCCCCGTCGTCGTCTGGCGCTGCTTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                    <  5:94287/146‑1 (MQ=11)
                                                                                                                                        tGCGCGCTTTCGCGCGGGCCAGCGCCGCGTCGACGGCGTCTTTGGGCGGATGTACCTGGTGGTGTGGCTCCGAAGTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg                 <  3:899605/149‑1 (MQ=11)
                                                                                                                                          ggggcTTTGGCGCGGGCAATAGCCGCGGCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAcc              <  7:1456359/147‑1 (MQ=14)
                                                                                                                                            cgcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACATCTTGTTCTGGGTCGTAATTATCCTGAAACATATCAAGCTTGAGGGCTTTGGAAAGGGCGATAACAGATTAGAAGGACTCTTTGCGAGGAtaatcatgt           >  2:603403/1‑143 (MQ=2)
                                                                                                                                             gcTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGGTTTACGAGGATCGACAACTTGTTCTGGGTCGTAATTATCCTGTTGATGTTCCAGATTGATAGGTTTGGCGAGGTCTATAGATACTTCGAATGCAGTTTTGCGTGGATCgggaaggg          >  8:560434/1‑144 (MQ=255)
                                                                                                                                                      tCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACCTCGTCTTCTgct  >  4:936137/1‑149 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGT  >  DH1/2169429‑2169727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: