Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5950GT23.7% 309.1 / 23.3 230V655V (GTC→GTA) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base G (49/112);  new base T (1/49);  total (56/174)
Fisher's exact test for biased strand distribution p-value = 5.52e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 235 total aligned reads displayed.

ATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGC  >  DH1/2169445‑2169745
                                                                                                                                                      |                                                                                                                                                      
aTTAGCCTGTTGCTGTTCGCGCTTGCGTGCTTTTGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                                                        <  4:822078/151‑1 (MQ=255)
aTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTGATCGGAGATCCGGCGGGTATTCTAACACGGCTTTAGAGTGTTGATGTTGCCGTTTGCGCGCTTTGGGTAGGGAAATAGCGGCTTCg                                                                                                                                                        >  6:1535079/1‑151 (MQ=9)
aTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                                                        <  3:824243/151‑1 (MQ=255)
 ttAGCCTGTTGCTGGGCCCGCTTGCGTGCTTGGGCGCGGGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                                                        <  6:1097337/150‑1 (MQ=25)
   aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGAGCTGGTCTTCTGGCTCGGCAGTAGAAGGTTGGTTTTCGAGTTTGAGCTCTGTGGGTCGGGCAATAGCGGATTCGa                                                                                                                                                       >  4:900242/1‑149 (MQ=14)
   aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTGTTCTGGATCCGCATTAGCCTGTTGCTGTTCCAGGTTGCGCGCTTTGTCACGGGAATTAGCGGCTTCGCcg                                                                                                                                                     >  7:411812/1‑151 (MQ=11)
   aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTTCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                                                      <  3:1330656/150‑1 (MQ=255)
   aGCCTGGTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                                                      <  3:1519828/150‑1 (MQ=255)
        gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGAAAACACCAGAGCTTCTGGGTCGGCAATAGACTTTAGCTTTTACATGATGAGCGGTTTGGCACGGTCAATAAAACATTCGAcggcggg                                                                                                                                                >  4:440914/1‑150 (MQ=2)
        gTTGCTGGTCGAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcgg                                                                                                                                                 <  6:76923/150‑1 (MQ=255)
           gcgggtcccccTTGCGTGCGTGGGCGCGTGCAATAGCCGCTTCCAAGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                                             <  6:794335/141‑1 (MQ=17)
           gCTGTTCGCGCTTGGGTGCTTGGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                                             <  5:184975/151‑1 (MQ=255)
           gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGGTTGCGCGCTTTGGCGCGGGCAATAGCGGCTGCGACGGCAGGttt                                                                                                                                             >  1:758903/1‑151 (MQ=14)
           gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                                             <  8:1716747/151‑1 (MQ=255)
              gttcgtgCTTTCTTGCTTTCGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                                                                                                          <  2:688728/145‑1 (MQ=17)
              gTTCCAGGTTTCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc                                                                                                                                           <  8:555670/150‑1 (MQ=255)
               ttCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCCACGGCAGCTTTCGGCCCAACGACCTGTTCATATGCATAGTCATTAGCCTCTTTCTGGTGCAGCTTGAGCCATATGTATCGGGGGATTGCGGCTTCGAcgggctcggtcggg                                                                                                                                         >  1:1650822/1‑140 (MQ=2)
               gtCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc                                                                                                                                         <  1:557375/150‑1 (MQ=255)
                  cAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                                                                                                                                      <  8:78167/151‑1 (MQ=255)
                   aGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGCCGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGCCGGTTGCTGTTCCCGTTTGCGAGCTTTGGCTCGGGCAATAGCGGCGTCGCGGGGGGCTGTGGGCGGAt                                                                                                                                     >  5:1403878/1‑151 (MQ=25)
                    gCTTGCGTGCTTTGGCGCGGGCAATAGCCGCGGCAACGGCAGCTGTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTCGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                                                    <  5:1108142/151‑1 (MQ=14)
                       tGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGATTTGCGAGGATCAACCTATTCTTCTCGGTACGCATTAGCCTGTTGCTGTTCCAGATTGAGAGCTTTGGCGCGGGCAATATATGCATAAACGGCAGCTTTGCGGGGAtgcac                                                                                                                                 >  4:593615/1‑147 (MQ=2)
                       tGCGGGCCTTGGCGCGGGCAATAGCCGCTGCAACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGa                                                                                                                                  <  3:988694/150‑1 (MQ=14)
                        gctggccttcgcgcGTGCAATAGCCGCGGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc                                                                                                                                 <  4:1791239/140‑1 (MQ=17)
                         cGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGTTTGCGAGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGGTTGCGCGGAGCgcggg                                                                                                                               >  5:565371/1‑147 (MQ=17)
                          gTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGGTTGCGCGCGTTGGCTCGGGCCATAGCTGCTTCCACGGCCGCTTTTCGCGGATCCGCCtg                                                                                                                              >  3:805500/1‑151 (MQ=14)
                            gCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                                            <  4:1572619/151‑1 (MQ=255)
                            gCTTTCGCGCGTGCAATAGCCGCTTCCACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                                            <  6:924202/151‑1 (MQ=255)
                              gttGGCGCGGGCAATAGCCGCTTCGAAGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttgt                                                                                                                          <  7:473597/150‑1 (MQ=255)
                                tGGCTCGTGCAATAGCCGCTTGGACGGCAGCTTTGGTCGGATCAACCTGTTCTTATGCCTCCGCTTTAGCCTGGTGCTGTTCGCGTTTGCTCGCTTTGGCGCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTgttgtt                                                                                                                         <  3:566946/150‑1 (MQ=14)
                                gtgcgcGTGCAATAGCCGCTGCGACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTc                                                                                                                        <  4:978882/149‑1 (MQ=14)
                                 ggggcgTGGAATAGCCGCTTGTACTGCAGCTTTGCGCTGTTCTACCTGATCTTCTTGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTGGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                                       <  8:1549776/148‑1 (MQ=14)
                                 ggCGCGTGCAATAGCCGCTTCTACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                                       <  7:1832304/151‑1 (MQ=255)
                                 ggCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                                       <  5:1266727/151‑1 (MQ=255)
                                     ggggCAATAGCCGCTTCTACTGCAGCTTTGCGCTGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCGCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGCt                                                                                                                   <  8:1903663/148‑1 (MQ=14)
                                     cgTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTggat                                                                                                                   >  8:105230/1‑149 (MQ=255)
                                      gggCAATAGCCGCGGCAACGGCAGCGTTCCGCGGAGCAACCTCTTCTTCTGGCTCGGCATTAGCCGGGTGCTGTGCGCGTTTGCGCGCTTTCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTc                                                                                                                  <  3:52435/149‑1 (MQ=17)
                                        gCAATAGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg                                                                                                                <  8:652656/151‑1 (MQ=255)
                                             aggcgcgtggACGGCCGCTTTGCGCGGATCTACGTGTTCTTCTGGCTCCGGTTTAGCCGGTTGCTGTTCCCGGTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa                                                                                                           <  1:908820/142‑1 (MQ=14)
                                             aGCCGCTTCGACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAtt                                                                                                            <  5:844937/150‑1 (MQ=255)
                                               cctcTTCGACGGCATCTTTTCGCTGATGTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCGCGTTTTCTCGCTTTCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGc                                                                                                         <  6:575390/148‑1 (MQ=14)
                                                gtcTTTGAAGGCAGGTTTGCTCGTATCAAGATGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGcc                                                                                                        <  3:172442/149‑1 (MQ=11)
                                                 gCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTACCGATTGCGCGCTTTGGCTCGGGCAATAGAGGCTTCAACGGCAGATTTGCGCGGATCGCCCGGTGGTTGTGGGTCCGcggtcgcgg                                                                                                       >  7:579754/1‑143 (MQ=11)
                                                   ggctactgccgCTGTGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCGCGTTTGCTCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGt                                                                                                     <  6:139902/141‑1 (MQ=14)
                                                   ggcgaattcAGCTTTGCGCGGAGCATCCTGCTCTTCTGGCCTCGCATTAGCCGTCTGCTGTTCCCGTTTTCTCGCTTTCGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGt                                                                                                     <  1:273830/143‑1 (MQ=14)
                                                     ccactgccgCTTTGCGCTGAGCCACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGGTCCCGTTTGCGCGCTTTCGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg                                                                                                   <  1:984476/143‑1 (MQ=14)
                                                     cGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg                                                                                                   <  3:1775662/151‑1 (MQ=255)
                                                      atcGGCTGCTTTGGGGGTATCAACGTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCGGTTTGCGGGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc                                                                                                  <  1:1475045/149‑1 (MQ=14)
                                                       aCGGCAGCGTTGCGCGGAGCCACCTGGTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCt                                                                                                 <  3:1707086/151‑1 (MQ=255)
                                                        ctttcgCTTTGCGCGGATCTTCCTCTGTTTCTTGCTCGTTTTTATCCTGGTGCTGGTCGGGTTTTTTGGCCTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc                                                                                                  <  6:20630/144‑1 (MQ=2)
                                                           cAGCTGTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTc                                                                                             <  7:1367351/151‑1 (MQ=255)
                                                             gcgtgccggggctccaCCTGTTCTGCTGGCTCCGCATGAGCCTGCTGCTGGGCCCGTTTTCGGGCGTTTGCTCGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                                           <  5:1651694/136‑1 (MQ=14)
                                                              cTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCAGATTTACGAGGATCAACAACTTTTTCTGGGTCGTCATTATCCTGTAGATCTTcc                                                                                            >  8:736683/1‑149 (MQ=11)
                                                               tttGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGATTAGCGCGCCTCTGCAGTGGGTTCTGGGTAGTCATTAGCCTCTTGCTggtactgc                                                                                         >  1:1512017/1‑144 (MQ=14)
                                                                   cgcgGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGCTTTGCGAGGATCGCCCAGGTGTTCTGGGTCGGCATTAGACTCTTGCTGTTCCAGCTTGc                                                                                     >  5:1490704/1‑151 (MQ=18)
                                                                       gATCCAGCTGTTCATCTGGCTGCGCTTGCGCCGGGTGCTGGGCGGGTTTTGGGGCGTTCGCGCGGGCAATAGCGGCTGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc                                                                                 <  5:461335/151‑1 (MQ=9)
                                                                          gtcccggtgcttccGCCTCCGCATCACCCTTGTGCTGTTCGGGTTTGCTGGCGTGCGCGCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCttt                                                                              <  1:1731761/142‑1 (MQ=2)
                                                                           aaCCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGCCTTAGCGCGGATAGAACTGATATTCTGGATAGAAATAAGCCTGTTTCTGTTCCAGCTTGCgaaattt                                                                              >  6:1492168/1‑144 (MQ=14)
                                                                            aCCTGTTCTTCTGGCTCCGCATTACCCGGGTGCTGTTCCCGTTTTCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTgg                                                                            <  7:792530/151‑1 (MQ=255)
                                                                              gtgtgCTTCTGGCTCCGCATGAGCCTGATGCTGTTCGCGTTTGCGGGCGTTCGCGCGGGCAATAGCCGCGGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCa                                                                          <  7:1156615/150‑1 (MQ=11)
                                                                                gatcgtctGGCTCTGTATCATCCTGGTGCTGGTCGGGTTTGCGGGCGTGAGCGCGGGCAATAGCGGCTGCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACg                                                                        <  2:25551/146‑1 (MQ=9)
                                                                                     tctGGCTCCGCATTAGCCTGTTGCTGGTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc                                                                     <  1:1265168/149‑1 (MQ=255)
                                                                                      ctGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACggcggc                                                                                                                                                >  5:1230519/1‑73 (MQ=255)
                                                                                      ctGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTACGGGGATCGCCATCGGTTGCTGGGTCGGGAGTAGCCTGATGTTGTTCCTGCTTCCGTCCtttttgccgtgaaat                                                                  >  7:1458735/1‑139 (MQ=9)
                                                                                        gccTCCGCATCAGCCTGGTGCTGGGCGCGTTTGCTGGCCTTCGCGCGGGCAATAGCGGCGGCGACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAg                                                                <  3:314836/149‑1 (MQ=14)
                                                                                          ttCCGCTTTATCCGTTTGCTGTTCAAGTTTTATCTCTTTTGCTCTTGCATTAGCGGTTTCGATGTCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc                                                               <  8:323042/149‑1 (MQ=14)
                                                                                          cTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCGATAGCTGCTTCAAcg                                                                                                                                                     >  1:1851437/1‑64 (MQ=255)
                                                                                           tCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGGTTTCCGGGGATCGCCAAGTTTTGCTGCGTCGGTAGTATCCTGTTGGTGTTCCTGGTTGCCTCGTTTCTCGCGGGCGATACCgg                                                             >  1:368061/1‑151 (MQ=255)
                                                                                            ccgcaagacccGGGTGCTGGGCCCGGTTGCGGGCGTGCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg                                                              <  1:1332866/140‑1 (MQ=14)
                                                                                             gtttttatccttttGCTGTTCGGGTTTGTTGGCTTTTGCGCGGGCAATAGCGGCTTCTAGTGGTGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGc                                                            <  2:365009/138‑1 (MQ=14)
                                                                                             cGCATTAGCCTGTTGCTGTTCCCGGTTGCGCGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt                                                           <  7:1034989/151‑1 (MQ=255)
                                                                                             cGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt                                                           <  7:1713267/151‑1 (MQ=255)
                                                                                               catgaccctggtGCTGTGCCCGTTTGCTGGCGTGCGCGCGGGCAATAGCGGCGGCCACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                                         <  3:1006093/140‑1 (MQ=14)
                                                                                                aTTAGCCGGGTGCTGGGCCCGTTTGCGCGCGTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                                        <  5:878461/151‑1 (MQ=17)
                                                                                                aTTAGACGGTTGCTGTTCACCTTTTCGTTATTTGTCTTTGGCTATAGCTGGCTCTTCGGATGTTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                                        <  2:1514323/151‑1 (MQ=9)
                                                                                                 ttAGCCTTTTGCTGTTCGCGTTTGCTGGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                                         <  8:101599/149‑1 (MQ=14)
                                                                                                   agctgtttGCTGTTCGGGTTTTTTTGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCGTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc                                                      <  2:1590883/144‑1 (MQ=14)
                                                                                                     ccttttGCTGTTCGTGTTTTTTTGCTTTTGCTCGTGCAATAGCGTCTTCTACTGCCGCTTTGCGCTTATCTACCTGTTGTTCTGGTTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                                                   <  4:1164719/147‑1 (MQ=11)
                                                                                                     cctgTTGCTGTTCCTGCTTGCTCGCTTTCGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                                                   <  4:1252511/148‑1 (MQ=14)
                                                                                                        ggtGCTGTTCGTGATTGGGCGCTTTGGCTCGGGGAATCGCGTCTGCGCCGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc                                                <  5:490184/149‑1 (MQ=14)
                                                                                                        gTTGCTGTTCGCGTTTTTGGGCTTTCGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggcg                                                  <  4:548158/149‑1 (MQ=14)
                                                                                                        cgggctgcccccGTTTGCGTGCGTTGCCGCGGGCACTAGCCGCTTGGCCGGCAGGTTTGCGCGGATCACCCGGGTGCTCTTGCGCGCCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc                                                <  5:1535369/142‑1 (MQ=9)
                                                                                                           gCTGTTCGCGGTTGCGGGCGTTGGCGCGGGCAATAGCGGCTGCGACTGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt                                             <  1:1100508/151‑1 (MQ=14)
                                                                                                             tGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTTCGCGGATCGCCCTGGTGTTCTGGGTCGGCATTAGAGAGATGATGTTCAACCTTGCGAGCTGTCGCCCGGGAACTAGCTGCTTCAACGGCTGTTTTgc                                           >  3:276065/1‑151 (MQ=2)
                                                                                                              gttcgagTTTGCGGGCTGGCGCTCCGCCATTAGCGGCTGCGACGGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTg                                            <  5:727656/143‑1 (MQ=14)
                                                                                                                    gttttctagcTTTGGCTCTGTTAATAGCCTCTTCGAGGTTGGGTTTGCGCGGATCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                    <  4:297692/143‑1 (MQ=11)
                                                                                                                    gcttgagggcatttgCTAGGGCAATATGCGCGTCGTCGGGAGCTTTGGGATGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTGCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                    <  3:144315/137‑1 (MQ=14)
                                                                                                                    gTTTGTGGGCGTTCGCTCGGGCAATAGCCGCGGCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGGTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                    <  2:1468132/151‑1 (MQ=14)
                                                                                                                     tttGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGCCCTGGTGTTCTGGCTCGGCATTAGCCTGTTGCTGTGCCAGCTTGCGTGTTTGGGCCCGGGGAATCGCTGCGTCTACGGCAGCtgaaccgggatcg                                   >  1:613841/1‑139 (MQ=14)
                                                                                                                         gtggccttagCTCGTGCAATAGCCGCTGCAACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAcc                                <  6:1282213/141‑1 (MQ=11)
                                                                                                                         cgggcgttGGCGCGGGCAATAGCGGCGGCAACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                               <  3:360704/145‑1 (MQ=14)
                                                                                                                         cgggcctgcgcgcGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGCACGGCATTAGCCTGTTGCTGTGCCAGCTTTCGTGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                               <  1:236826/139‑1 (MQ=14)
                                                                                                                           cgcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACATCTTGTTCTGGGTCGTAATTATCCTGAAACATATCAAGCTTGAGGGCTTTGGAAAGGGCGATAACAGATTAGAAGGACTCTTTGCGAGGAtaatcatgt                             >  2:603403/1‑143 (MQ=2)
                                                                                                                            ccgatcgcgcGGGCAATAGCCGCTGCTACTGCTGCTTTGCGCGGATCTACCTGTTGTTCTGGTTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGtt                            <  8:1154538/142‑1 (MQ=11)
                                                                                                                               ttGGCTCTTGCTATCTCGGCGTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCTGCTTCAACGGCAGTTTTACGTGGATcagcaacggtt                          <  8:1187078/150‑11 (MQ=18)
                                                                                                                                     ggggCAATAGCGTCTGGAACTGCGGCTGTTCGCGGATCGAACTGATGTTCTGGCTCGTCATTAGCCTGTTGCTGGGCCTGCTTGCTGGCTTTGGCTCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGtt                   <  7:213560/150‑1 (MQ=14)
                                                                                                                                         cAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGAGGATAAACAACTTATTCTGGTTcct                >  2:1275344/1‑149 (MQ=11)
                                                                                                                                         cAATAGCGGCTGCAACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATAAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGc               <  3:659627/151‑1 (MQ=255)
                                                                                                                                                 gCTTCGACTGCGGCTTTGCGCTGAGCGACGTGTGGTTCTGCGTCGGCTTTAGCGTGGTGCTGTTCGCGGTTGCGGGCGTTGGCTCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCt       <  1:1437412/151‑1 (MQ=11)
                                                                                                                                                      gACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGATTTGCGAGGATCGACCTGTTGTTCTGGTTCCGCATTAGACTGTTgt  >  8:1398705/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
ATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGC  >  DH1/2169445‑2169745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑