| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 2,169,598 | 0 | G | T | 24.8% | 304.5 / 34.5 | 214 | A654A (GCC→GCA) | rsxC | electron transporter RsxC |
| Reads supporting (aligned to +/- strand): ref base G (46/112); new base T (0/52); total (48/166) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 228 total aligned reads displayed.
AGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTG > DH1/2169448‑2169747 | aGCCTGTTGCTGGGCGCGCTTTCGTGCTTTTGCGCGGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcg < 4:1108728/151‑1 (MQ=17) gCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGGATTGCGCGACTCCACGTGTTATGAGCGGTCAGCATAATCGGGTTGCTGTTCCCTCTTGCGCGGTTTGGAACGGGCGATAGCGGCTTCGCcgg > 5:1042589/1‑151 (MQ=9) ccTGTTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc < 3:707615/151‑1 (MQ=255) gTTGCTGGTCGAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcgg < 6:76923/150‑1 (MQ=255) tGCTGTTCCAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCt < 8:1431946/150‑1 (MQ=255) gcgggtcccccTTGCGTGCGTGGGCGCGTGCAATAGCCGCTTCCAAGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt < 6:794335/141‑1 (MQ=17) gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt < 5:145830/151‑1 (MQ=255) gggTTCCTGGTTTCTTGCCTTTGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg < 5:189564/149‑1 (MQ=17) gTTCCAGGTTTCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc < 8:555670/150‑1 (MQ=255) gTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg < 7:416631/151‑1 (MQ=255) gTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc < 6:1524553/150‑1 (MQ=255) gTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg < 1:731968/149‑1 (MQ=255) cAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa < 8:78167/151‑1 (MQ=255) aGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGGTCCAGTTTGAGCGCTTTGGCTCGTGCAGTCGCGGCTTAGACGGCGGCTTTGCGCgg > 5:1513046/1‑149 (MQ=14) ttGCGTGCATGGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGCTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCTCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg < 3:411065/150‑1 (MQ=255) tGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGATTTGCGAGGATCAACCTATTCTTCTCGGTACGCATTAGCCTGTTGCTGTTCCAGATTGAGAGCTTTGGCGCGGGCAATATATGCATAAACGGCAGCTTTGCGGGGAtgcac > 4:593615/1‑147 (MQ=2) cccggcctgcgcgcGGGCAATAGCCGCTTGTACTGCCGCTTTGCGCGGCTCAACCTGTTCTTCTTCATGCGCATTAGGTTGTTCCTGTTCCCGTTTGCGCGCTTTTGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGAcc < 1:257254/141‑1 (MQ=9) gTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTCTTCTGGGTCGGGAGTAGCCGGTGGCTGGTGAAGTGTGCGCGCTTTGGGGCGGGGACTAGGGGCTGGGCGGGGGGCTTTGAGCGGATCgccggg > 7:484221/1‑146 (MQ=9) gTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGGTTGCGCGCGTTGGCTCGGGCCATAGCTGCTTCCACGGCCGCTTTTCGCGGATCCGCCtg > 3:805500/1‑151 (MQ=14) tGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCACCTTTGCGCGTATAGACCTGTTATTCTGTATACGGATTAGCAGGTTGCTGTTCACGATTGAGCGCTTTGGCAAGGGCAATAGCGGCTTCGACGGCTCGGTTGCGCggctgggagggt > 2:383761/1‑141 (MQ=9) gcgtgtgcgcGTGCAAGCGGCGCTGCTACGGGCGCTTTGCGCGTATCAACCTGATCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt < 3:1675403/145‑1 (MQ=14) gCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCCGCAGTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtggg > 3:609247/1‑149 (MQ=255) gCTTTCGCGCGTGCAATAGCCGCTTCCACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt < 6:924202/151‑1 (MQ=255) ttgcgcGTGCAATAGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTgttgtt < 6:1347162/148‑1 (MQ=255) gtgcgcGTGCAATAGCCGCTGCGACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTc < 4:978882/149‑1 (MQ=14) ggggcgTGGAATAGCCGCTTGTACTGCAGCTTTGCGCTGTTCTACCTGATCTTCTTGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTGGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt < 8:1549776/148‑1 (MQ=14) ggCGCGTGCAATAGCCGCTTCTACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt < 7:1832304/151‑1 (MQ=255) agagctgtaaaTAGCCGCTGCCTCGGCCTCTTTGCGCGGATCTACTTGTTCTTCTGGCTCCGCATTATCCTTTTGCTGTTCCGGTTTTTGGGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt < 4:1614575/142‑1 (MQ=11) gcgcGTGCAATAGCCGCTTCTACGTCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGCCGGTTGCTGTTCCCGTTTGCGGGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg < 4:1199443/151‑1 (MQ=255) gcgcGGGCAATAGCCGCGGCTACGGCAGCTTTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg < 1:556717/151‑1 (MQ=14) ccacccgccctcgCCGCTTCCGCGCCCGCTTTGCGCGGATCCACCTGTTCTTATGTCTCGGCCTTCGCCTGTTGCTGTTCCACCTTCAGAGATTTGTGTCGCGAAATAGCGTCTTCGACGGACGCTTTGCGCGGATCGACCTGTTGTTCTg < 1:1614831/139‑1 (MQ=0) ggcggggaattggcGCTGCTACTGCGGCTTTTCGCTGAGCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCTGTTTGCGTGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTgg < 2:742566/138‑1 (MQ=11) cgcgTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTGTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCTATAGCTGCTTCGACGGCGGGTTTCCGAGGATCCGCCTGGGGTGCTgg > 1:976097/1‑151 (MQ=14) gggCAATAGCCGCTTCTACTGCAGATTTGCGCGTATCTACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTc < 8:22091/149‑1 (MQ=14) cAATAGCCGCTTAGCCGGCAGCTTTGCTGGGATGACCCCGTTCTTCCGGCTCCGCATTAGCCGGTTGCTGTTCCAGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGc < 1:1877456/151‑1 (MQ=17) aaTAGCCGCGGCTACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCa < 6:1122800/151‑1 (MQ=14) tAGCCGCGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCAGCTTAGCCGGCCCCGTTGCCAGTCGCGACCGGTTATTCTCGCTCGGCttt > 3:1711094/1‑151 (MQ=17) aGCCGCTTCGACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAtt < 5:844937/150‑1 (MQ=255) gcgcgTCTACTGCAGCTTTGCGCGGATCAACCGCTTCTTCTGCGACCGCATTAGCCTGCTGCTGTTCCCGTTTGCGCGCTTTCGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAg < 2:345458/149‑1 (MQ=14) gaggggcaactgccgCTTTGCGCTGATCTACCTGTTCTTATGGCTCGTCTTTATCCTGTTGCTGTTCGGGTTTTCGGGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGc < 8:1872224/137‑1 (MQ=14) cgcgTCGTCTGCAGCTTCGGGCGGCCCCACCTGTCCTTCTGGCTCCTCACTAGCCTTCTGCTGCGGCCGCTTGCCCGCTGTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGcc < 4:193050/151‑1 (MQ=2) gcggcGACTGCAGCTGTCCGCGGATCAACCTGTTATTCTGGCTCCGCATTATCCTGTTGCTGTTCCCGTTTGCTGGCCTTGGCGCGGGCAATAGCGGCTGCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCt < 5:53957/147‑1 (MQ=14) gCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCt < 8:66631/151‑1 (MQ=255) gACGGGAGCTGTGCGCGGTTCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCCGGTTTGCGGGCTTTTGCGCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc < 6:1403469/151‑1 (MQ=14) atcGGCTGCTTTGGGGGTATCAACGTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCGGTTTGCGGGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc < 1:1475045/149‑1 (MQ=14) ctttcgCTTTGCGCGGATCTTCCTCTGTTTCTTGCTCGTTTTTATCCTGGTGCTGGTCGGGTTTTTTGGCCTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc < 6:20630/144‑1 (MQ=2) ggCTGCTTTGCGCTGATCAACCTGTTCTTCTGGGACGGGATTAGGCTGTTGCTGGTCGGGTTTTCTGGCTTGGGCGCGGGCAATAGCGGCGGCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGt < 2:1488347/151‑1 (MQ=2) gCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCAATAGCCGGGTGCTGTTCCCGATTGCGCCCTTTGGCTCGGGCAATAGAGGCTTCGACGGCGGCTTTCCTCGGATCGACCTGTTGTTCTGGGTCGGCTGTGGCGTGTTGCGGtg > 7:1047844/1‑150 (MQ=14) cAGCTGTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTc < 7:1367351/151‑1 (MQ=255) cTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCAGATTTACGAGGATCAACAACTTTTTCTGGGTCGTCATTATCCTGTAGATCTTcc > 8:736683/1‑149 (MQ=11) tttGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGATCGGCATTAGCCTGTTGCTGTTCCAgg > 7:752338/1‑150 (MQ=255) tttGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGATTAGCGCGCCTCTGCAGTGGGTTCTGGGTAGTCATTAGCCTCTTGCTggtactgc > 1:1512017/1‑144 (MQ=14) gggggATCCACCTGTTCTTCTGGCTCCGCATTTGGCTGTTGCTGTGCGGGTTTGCGGGCGTTGGCGCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGc < 5:1382200/148‑1 (MQ=11) gcgTATCAACCTGTTCTTCTTGCTCCGCATTAGCCTGGTGCTGTTCGCGTTTTCGGGCTTTGGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCg < 3:527831/151‑1 (MQ=14) gATCCAGCTGTTCATCTGGCTGCGCTTGCGCCGGGTGCTGGGCGGGTTTTGGGGCGTTCGCGCGGGCAATAGCGGCTGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc < 5:461335/151‑1 (MQ=9) gATCAACCTTTTCATCTGGATCCGCCCTACCCGGTTGCTGTTCGCGGTTTCGAGCTCTGGCGCGTGCAATAGCGGCGTCGACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc < 7:356479/151‑1 (MQ=14) cacgtggtattctGCCTCGGCATTAGCCGGGTGCTGGTCCGCTTTGCGCGCGTGGGCGCGGGCAATAGCGGCGGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTg < 3:128589/142‑1 (MQ=14) acgagctattcttccTCGGCAATAGCCTGCTGCTGGGCGGGTTTGCTGGCCTTCGCGCGGGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTgg < 3:1757419/137‑1 (MQ=2) cTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCAGCTATGAGCCGATAGAACTATTGTTATGGATCGGAATTAGCATGTTGATGTTCCAGATTGCGAGATTTgta > 6:542384/1‑148 (MQ=255) tcttctGGGTCCTTATTAGCTTGTTGCTGTGCGCGTTTGTTGGCTTTGGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACgg < 8:1246433/150‑1 (MQ=14) ttcgGGCTCCTCTTTAGCCTGGTGCTGTGCGCGTTTGCGCGCGTGCGCGCGGGCAATAGCGGCGGCCACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc < 4:452304/150‑1 (MQ=14) tctGGCTCCGCATTAGCCTGTTGCTGGTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc < 1:1265168/149‑1 (MQ=255) tctGCCTCCGCAAGACCCTGCTGCTGGTCGCGTTTGCGCGCGTTGGCGCGGGCAATAGCCGCTTCCACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCa < 5:1242267/150‑1 (MQ=14) ctGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTACGGGGATCGCCATCGGTTGCTGGGTCGGGAGTAGCCTGATGTTGTTCCTGCTTCCGTCCtttttgccgtgaaat > 7:1458735/1‑139 (MQ=9) ggctcgtctttAGCCTTTTGCTGTGCGGGTTTGTGGGCGTGTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa < 2:1207970/141‑1 (MQ=11) ggCTCCTTATTATCCTGCTGCTGTTCGGGTTTGTGGGCTTGGGCGCGGGCAATAGCGGCGTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAg < 2:1564451/151‑1 (MQ=14) ggCTCCGCATTAGCCTGGTGCTGGGCCCGTTTGCTGGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAAt < 3:1827233/149‑1 (MQ=14) ccTCCGCAACAGCCTGGTGCTGGTCCCGTTTGCGCGCGTTGGCGCGGGCAATAGCCGCGTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc < 1:844673/150‑1 (MQ=14) ttCCGCTTTATCCGTTTGCTGTTCAAGTTTTATCTCTTTTGCTCTTGCATTAGCGGTTTCGATGTCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc < 8:323042/149‑1 (MQ=14) cTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCGATAGCTGCTTCAAcg > 1:1851437/1‑64 (MQ=255) tCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGGTTTCCGGGGATCGCCAAGTTTTGCTGCGTCGGTAGTATCCTGTTGGTGTTCCTGGTTGCCTCGTTTCTCGCGGGCGATACCgg > 1:368061/1‑151 (MQ=255) ccgcaagacccGGGTGCTGGGCCCGGTTGCGGGCGTGCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg < 1:1332866/140‑1 (MQ=14) ccGCATGAGCCTGCTGCTGGTCGCGTTTGCGGGCTTGTGCGCGGGCAATAGCGGCGTCTACGGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGc < 2:1387973/151‑1 (MQ=14) cGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt < 7:1713267/151‑1 (MQ=255) ggtAGGCGGATGCTGGGCGCGGTTGCTGGCCTTTGCTCGGGCAATAGCCGCGGCCACGGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGGTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCg < 5:1579609/149‑1 (MQ=11) gcccccGGGTGCTGGGCCCGCTTGCGTGCTTTGGCGCGGGCAATACCGGCTTCGACGGCCGCGTTGCGCGGATCGACCTCTGCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGa < 1:1353730/147‑1 (MQ=11) agctgtttGCTGTTCGGGTTTTTTTGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCGTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc < 2:1590883/144‑1 (MQ=14) ccttctgctgggcgggTTTGGGCGCGTGGGCGCGGGCAATAGCGGCGTCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 5:1669096/136‑1 (MQ=14) gCTGTTCGCGGTTGCGGGCGTTGGCGCGGGCAATAGCGGCTGCGACTGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt < 1:1100508/151‑1 (MQ=14) gCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCtt < 8:1089004/150‑1 (MQ=255) gCTGTGCCCCTTTGATGGCGTTCGCGCGGGCAATAGCGGCTGCTACGGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt < 1:1692924/151‑1 (MQ=11) gttcgggttttttggcTTTTGCGCGGGCAATAGCGGCTGCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcg < 4:362754/137‑1 (MQ=14) gttcgagTTTGCGGGCTGGCGCTCCGCCATTAGCGGCTGCGACGGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTg < 5:727656/143‑1 (MQ=14) gggcgcGTTTGCGGGCGTGGGCTCGGGCAATAGCCGCTTCCACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgc < 3:1228108/145‑1 (MQ=11) cgggTTTGCTCGCGTGCGCGCGGGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCgg < 5:1185799/148‑1 (MQ=11) cGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGGCCTGGTGTTCTGGCTCCGCATTAGCGGGATGCTGTTGCAGCTTGCGCGGTTTGGCTCGGGCGCTAGCTGCTTAGACGGCGGGTTTGCggggct > 5:918423/1‑149 (MQ=11) gcttgagggcatttgCTAGGGCAATATGCGCGTCGTCGGGAGCTTTGGGATGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTGCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 3:144315/137‑1 (MQ=14) gTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCTGATCGCAATGGGGTTCTTGTTAGGAATTATCCTGTTGCTCTTGCTGCTTTCGCGGGTTGTGCCGGGAAATAGCTGCTTCGACGGCGGGTTTGCggggctg > 3:284143/1‑148 (MQ=2) ttttgggcttgagCTCTGTCAATAGCCGCTGCTACTTCGGCTTTGCTCGGATCTAACTGTTGTTATGGCTCGTCATTAGCCTGTTGCTGTTCCAGGTTGAGTGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCg < 4:1485713/138‑1 (MQ=9) tGCGCGCTTTCGCGCGGGCCAGCGCCGCGTCGACGGCGTCTTTGGGCGGATGTACCTGGTGGTGTGGCTCCGAAGTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg < 3:899605/149‑1 (MQ=11) tggcTTTCGCTCGTGCAATAGCCGCGGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAACt < 4:6666/148‑1 (MQ=14) cgcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACATCTTGTTCTGGGTCGTAATTATCCTGAAACATATCAAGCTTGAGGGCTTTGGAAAGGGCGATAACAGATTAGAAGGACTCTTTGCGAGGAtaatcatgt > 2:603403/1‑143 (MQ=2) ccgatcgcgcGGGCAATAGCCGCTGCTACTGCTGCTTTGCGCGGATCTACCTGTTGTTCTGGTTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGtt < 8:1154538/142‑1 (MQ=11) cgcGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGAGCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCCGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTgg < 3:326282/149‑1 (MQ=14) ggggCAATAGCGTCTGGAACTGCGGCTGTTCGCGGATCGAACTGATGTTCTGGCTCGTCATTAGCCTGTTGCTGGGCCTGCTTGCTGGCTTTGGCTCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGtt < 7:213560/150‑1 (MQ=14) cggccagcccggcggcGACGGCGGCTTTGCGCGGATCTACCTGTTTTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGTCTATAGCGGCTTCTACTGCTGCTTTGCGCGGATCGACCTGTTCTTCTGGTTc < 8:1046627/136‑1 (MQ=14) aaTAGCCGCGGCGACGGCGGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTTCGTGCTTTGGCACGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCa < 7:83143/151‑1 (MQ=11) aGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGGTCGGCATTAGCCTGTTGATGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCTGCTTCTACGGCGGGTTTGCGGGGATCCCCCACTGCTCCTGGTTCCGCagt > 5:601648/1‑148 (MQ=14) aGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCTGCTTCTACGGCGGGTTTCCGCGGATCCGCCTGTGGTGCTGGGTcctgagt > 7:120393/1‑145 (MQ=11) aGCGGCCTCGACGGCCGCCGTGCGCGCATCCCAGCGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTa < 1:566857/151‑1 (MQ=11) | AGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTG > DH1/2169448‑2169747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |