Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,6160GT21.9% 251.9 / 25.8 201V648V (GTC→GTA) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base G (42/97);  new base T (2/37);  total (50/151)
Fisher's exact test for biased strand distribution p-value = 6.85e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 204 total aligned reads displayed.

TTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGC  >  DH1/2169467‑2169760
                                                                                                                                                      |                                                                                                                                                
ttGCGTGCATGGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGCTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCTCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg                                                                                                                                                  <  3:411065/150‑1 (MQ=255)
 tGCGGGCCTTGGCGCGGGCAATAGCCGCTGCAACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGa                                                                                                                                                 <  3:988694/150‑1 (MQ=14)
  cccggcctgcgcgcGGGCAATAGCCGCTTGTACTGCCGCTTTGCGCGGCTCAACCTGTTCTTCTTCATGCGCATTAGGTTGTTCCTGTTCC‑CGTTTGCGCGCTTTTGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGAcc                                                                                                                                               <  1:257254/141‑1 (MQ=9)
    gTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑AGTTTGCGCGCTTTGGCTCGGGCTATAGCGGCTTCCACGGCGGGTTTGCGGGGATCGGCCtg                                                                                                                                             >  1:326519/1‑151 (MQ=21)
      gCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCCGCAGTAGCCGGGTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtggg                                                                                                                                           >  3:609247/1‑149 (MQ=255)
       cctcggcccctccAATAGCCGCGGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑CGAGTGCGCTCGTGGGCGCGTGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttg                                                                                                                                          <  5:1004057/139‑1 (MQ=14)
        gttGGCGCGGGCAATAGCCGCTTCGAAGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttgt                                                                                                                                         <  7:473597/150‑1 (MQ=255)
          ttgcgcGTGCAATAGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTgttgtt                                                                                                                                        <  6:1347162/148‑1 (MQ=255)
           ggggcgTGGAATAGCCGCTTGTACTGCAGCTTTGCGCTGTTCTACCTGATCTTCTTGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTGGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                                                      <  8:1549776/148‑1 (MQ=14)
           ggCGCGTGCAATAGCCGCTTCTACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                                                      <  7:1832304/151‑1 (MQ=255)
           agagctgtaaaTAGCCGCTGCCTCGGCCTCTTTGCGCGGATCTACTTGTTCTTCTGGCTCCGCATTATCCTTTTGCTGTTCC‑GGTTTTTGGGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                                                      <  4:1614575/142‑1 (MQ=11)
            gcgcGTGCAATAGCCGCTTCTACGTCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGGGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                                                     <  4:1199443/151‑1 (MQ=255)
            gcgcGGGCAATAGCCGCGGCTACGGCAGCTTTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                                                     <  1:556717/151‑1 (MQ=14)
            ccacccgccctcgCCGCTTCCGCGCCCGCTTTGCGCGGATCCACCTGTTCTTATGTCTCGGCCTTCGCCTGTTGCTGTTCC‑ACCTTCAGAGATTTGTGTCGCGAAATAGCGTCTTCGACGGACGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                                                     <  1:1614831/139‑1 (MQ=0)
               cgTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTggat                                                                                                                                  >  8:105230/1‑149 (MQ=255)
                gggCAATAGCCGCTTCTACTGCAGATTTGCGCGTATCTACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTc                                                                                                                                 <  8:22091/149‑1 (MQ=14)
                gggCAATAGCCGCGGCTACTGCTGCGTTTCGCTGATGAACCTGTTCTTCTGGCTCCGCAATAGCCTGTTGCTGGGCC‑CGTTTGCGGGCGTGCGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTc                                                                                                                                 <  2:624632/149‑1 (MQ=14)
                   cAATAGCCGCTTAGCCGGCAGCTTTGCTGGGATGACCCCGTTCTTCCGGCTCCGCATTAGCCGGTTGCTGTTCC‑AGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGc                                                                                                                              <  1:1877456/151‑1 (MQ=17)
                       aggcgcgtggACGGCCGCTTTGCGCGGATCTACGTGTTCTTCTGGCTCCGGTTTAGCCGGTTGCTGTTCC‑CGGTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa                                                                                                                          <  1:908820/142‑1 (MQ=14)
                       aGCCGCTTCGACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAtt                                                                                                                           <  5:844937/150‑1 (MQ=255)
                         gcgcgTCTACTGCAGCTTTGCGCGGATCAACCGCTTCTTCTGCGACCGCATTAGCCTGCTGCTGTTCC‑CGTTTGCGCGCTTTCGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAg                                                                                                                         <  2:345458/149‑1 (MQ=14)
                         gaggggcaactgccgCTTTGCGCTGATCTACCTGTTCTTATGGCTCGTCTTTATCCTGTTGCTGTTCG‑GGTTTTCGGGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGc                                                                                                                        <  8:1872224/137‑1 (MQ=14)
                         cctcTTCGACGGCATCTTTTCGCTGATGTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCG‑CGTTTTCTCGCTTTCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGc                                                                                                                        <  6:575390/148‑1 (MQ=14)
                          gtcTTTGAAGGCAGGTTTGCTCGTATCAAGATGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑AGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGcc                                                                                                                       <  3:172442/149‑1 (MQ=11)
                           gcggcGACTGCAGCTGTCCGCGGATCAACCTGTTATTCTGGCTCCGCATTATCCTGTTGCTGTTCC‑CGTTTGCTGGCCTTGGCGCGGGCAATAGCGGCTGCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCt                                                                                                                      <  5:53957/147‑1 (MQ=14)
                           gCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTAC‑CGATTGCGCGCTTTGGCTCGGGCAATAGAGGCTTCAACGGCAGATTTGCGCGGATCGCCCGGTGGTTGTGGGTCCGcggtcgcgg                                                                                                                      >  7:579754/1‑143 (MQ=11)
                           gCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCt                                                                                                                      <  8:66631/151‑1 (MQ=255)
                              gctactggcgcgttGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGtt                                                                                                                   <  2:449813/139‑1 (MQ=14)
                               ccactgccgCTTTGCGCTGAGCCACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGGTCC‑CGTTTGCGCGCTTTCGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg                                                                                                                  <  1:984476/143‑1 (MQ=14)
                                gACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc                                                                                                                 <  8:111340/151‑1 (MQ=255)
                                 aggcgaGCTGTGCGCTGCTCATCGTGTTCTTCGGGTGCCGGACTCGCGTGTTGC‑GTTCCGAGCTTGCTGGCCTTCGCTCGGGCAATAGCGGCTTCCACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCt                                                                                                                <  3:1473072/146‑1 (MQ=2)
                                 aCGGCAGCGTTGCGCGGAGCCACCTGGTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCt                                                                                                                <  3:1707086/151‑1 (MQ=255)
                                     cAGCTGTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTc                                                                                                            <  7:1367351/151‑1 (MQ=255)
                                        tttttcgagtatttcccTCTTCTTCTGTCTTCGGATTTTCCTGTTGCTGGGCG‑GGTTTTTTGGCTTTTGCGCGGGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                                                          <  4:824380/135‑1 (MQ=2)
                                        gttttCGCGGATGATCCTGTTCTTGTGGCTCGTCATTAGCCTGTTGCTGTTCG‑GGTTTGAGGGCGTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                                                          <  8:319719/149‑1 (MQ=14)
                                        cTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCC‑AGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCAGATTTACGAGGATCAACAACTTTTTCTGGGTCGTCATTATCCTGTAGATCTTcc                                                                                                           >  8:736683/1‑149 (MQ=11)
                                         tttGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGATTAGCGCGCCTCTGCAGTGGGTTCTGGGTAGTCATTAGCCTCTTGCTggtactgc                                                                                                        >  1:1512017/1‑144 (MQ=14)
                                             gggggATCCACCTGTTCTTCTGGCTCCGCATTTGGCTGTTGCTGTGCG‑GGTTTGCGGGCGTTGGCGCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGc                                                                                                    <  5:1382200/148‑1 (MQ=11)
                                              gcgTATCAACCTGTTCTTCTTGCTCCGCATTAGCCTGGTGCTGTTCG‑CGTTTTCGGGCTTTGGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCg                                                                                                   <  3:527831/151‑1 (MQ=14)
                                                 gATCCAGCTGTTCATCTGGCTGCGCTTGCGCCGGGTGCTGGGCG‑GGTTTTGGGGCGTTCGCGCGGGCAATAGCGGCTGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc                                                                                                <  5:461335/151‑1 (MQ=9)
                                                 gATCAACCTTTTCATCTGGATCCGCCCTACCCGGTTGCTGTTCG‑CGGTTTCGAGCTCTGGCGCGTGCAATAGCGGCGTCGACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc                                                                                                <  7:356479/151‑1 (MQ=14)
                                                    gtcccggtgcttccGCCTCCGCATCACCCTTGTGCTGTTCG‑GGTTTGCTGGCGTGCGCGCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCttt                                                                                             <  1:1731761/142‑1 (MQ=2)
                                                      acgagctattcttccTCGGCAATAGCCTGCTGCTGGGCG‑GGTTTGCTGGCCTTCGCGCGGGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTgg                                                                                           <  3:1757419/137‑1 (MQ=2)
                                                      aCCTGTTCTTCTGGCTCCGCATTACCCGGGTGCTGTTCC‑CGTTTTCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTgg                                                                                           <  7:792530/151‑1 (MQ=255)
                                                       gctcttcttcTGGCTCGGCAGCTCCCGGTAGCTGTTCC‑CGTTTGCTGGCCTGTGCTCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGc                                                                                          <  3:1346415/147‑1 (MQ=14)
                                                        cTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCGCGGGCAATAGCTGCTTCAACGGCAGGTTTACGAGGATCACCCACGTGTGCTGCGTCGTGATTAGCCTGCAGATCTTCCAGAttcccacagtattgc                                                                                         >  2:1617163/1‑138 (MQ=2)
                                                            tcttctGGGTCCTTATTAGCTTGTTGCTGTGCG‑CGTTTGTTGGCTTTGGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACgg                                                                                      <  8:1246433/150‑1 (MQ=14)
                                                              ttctTGCTCGGCTTTATCCTGTTGCTGTTCG‑CGTTTTCTGGCGTTTGCGCGGGCAATAGCGGCTGCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc                                                                                    <  6:30389/150‑1 (MQ=14)
                                                               tctGGCTCCGCATTAGCCTGTTGCTGGTCC‑CGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc                                                                                    <  1:1265168/149‑1 (MQ=255)
                                                               tctGGCTCCGCATTAGCCGGTTGCTGTTCG‑CCTTTGCGGGCGTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCa                                                                                   <  1:824864/150‑1 (MQ=14)
                                                               tctGCCTCCGCAAGACCCTGCTGCTGGTCG‑CGTTTGCGCGCGTTGGCGCGGGCAATAGCCGCTTCCACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCa                                                                                   <  5:1242267/150‑1 (MQ=14)
                                                                ctGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTACGGGGATCGCCATCGGTTGCTGGGTCGGGAGTAGCCTGATGTTGTTCCTGCTTCCGTCCtttttgccgtgaaat                                                                                 >  7:1458735/1‑139 (MQ=9)
                                                                  ggCTCCGCATTAGCCTGGTGCTGGGCC‑CGTTTGCTGGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAAt                                                                                 <  3:1827233/149‑1 (MQ=14)
                                                                     cccgcatcccccGGCTGCGGCTCC‑CGCTTGCGCGCTTTGGCTCGTGCAATAGCGTCTTCGACGGCTGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCgg                                                                            <  6:1402951/141‑1 (MQ=14)
                                                                      cgtctttaggctggtGCTGTTCC‑GGTTTGTGGGCGTTGGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGc                                                                           <  6:1763676/137‑1 (MQ=14)
                                                                      ccgcaagacccGGGTGCTGGGCC‑CGGTTGCGGGCGTGCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg                                                                             <  1:1332866/140‑1 (MQ=14)
                                                                      ccGCATTAGCCGGTTGCTGTTCG‑CGTTTGCGGGCTTTCGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCgg                                                                            <  4:431279/150‑1 (MQ=255)
                                                                       cGCATTAGCCTGTTGCTGTTCC‑CGGTTGCGCGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt                                                                          <  7:1034989/151‑1 (MQ=255)
                                                                       cGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt                                                                          <  7:1713267/151‑1 (MQ=255)
                                                                          aTTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGGTTTACGCGGATCCACGTCATATGAGGCGTCGGCAGTACCCTCTACATGATCCAGCTTGCGTGCGTTGGCCCGGGCGATacaagcttcc                                                                       >  5:1599106/1‑142 (MQ=9)
                                                                          aTTAGCCGGGTGCTGGGCC‑CGTTTGCGCGCGTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                                                       <  5:878461/151‑1 (MQ=17)
                                                                          aTTAGACGGTTGCTGTTCA‑CCTTTTCGTTATTTGTCTTTGGCTATAGCTGGCTCTTCGGATGTTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                                                       <  2:1514323/151‑1 (MQ=9)
                                                                           ttAGCCTTTTGCTGTTCG‑CGTTTGCTGGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                                                        <  8:101599/149‑1 (MQ=14)
                                                                           gcccccGGGTGCTGGGCC‑CGCTTGCGTGCTTTGGCGCGGGCAATACCGGCTTCGACGGCCGCGTTGCGCGGATCGACCTCTGCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGa                                                                      <  1:1353730/147‑1 (MQ=11)
                                                                             atcattttGCTTTTCC‑CTCTTGCGCTCTTTGTCGCGGTTAATAGCTGCGGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc                                                                     <  8:117657/144‑1 (MQ=14)
                                                                                ccttctgctgggcgggTTTGGGCGCGTGGGCGCGGGCAATAGCGGCGTCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                                                                  <  5:1669096/136‑1 (MQ=14)
                                                                                  gTTGCTGTTCG‑CGTTTTTGGGCTTTCGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggcg                                                                 <  4:548158/149‑1 (MQ=14)
                                                                                  cgggctgcccc‑cGTTTGCGTGCGTTGCCGCGGGCACTAGCCGCTTGGCCGGCAGGTTTGCGCGGATCACCCGGGTGCTCTTGCGCGCCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc                                                               <  5:1535369/142‑1 (MQ=9)
                                                                                     gCTGTTCG‑CGGTTGCGGGCGTTGGCGCGGGCAATAGCGGCTGCGACTGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt                                                            <  1:1100508/151‑1 (MQ=14)
                                                                                         gttcgagTTTGCGGGCTGGCGCTCCGCCATTAGCGGCTGCGACGGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTg                                                           <  5:727656/143‑1 (MQ=14)
                                                                                             ccgcgtGCGCGCTTTTGCTCGCCCAAGAGCGGCTTCGACCGCGCCTTTGCGCTGATCCCCGTCGTCGTCTGGCGCTGCTTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                                                     <  5:94287/146‑1 (MQ=11)
                                                                                               gttttctagcTTTGGCTCTGTTAATAGCCTCTTCGAGGTTGGGTTTGCGCGGATCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                   <  4:297692/143‑1 (MQ=11)
                                                                                               gTTTGTGGGCGTTCGCTCGGGCAATAGCCGCGGCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGGTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                   <  2:1468132/151‑1 (MQ=14)
                                                                                               gTTTGCGCGCTTTGGCTCGGGCGATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTGCTGGGTCGGGATTAGCCTGTTGGTGTTCCAGCTTGCGCGGTTTGGGCCGGGCTATGGCTGCTTCTGCGGCTGGTTTGCGCGGAtg                                                   >  3:728128/1‑150 (MQ=11)
                                                                                               gTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCTGATCGCAATGGGGTTCTTGTTAGGAATTATCCTGTTGCTCTTGCTGCTTTCGCGGGTTGTGCCGGGAAATAGCTGCTTCGACGGCGGGTTTGCggggctg                                                   >  3:284143/1‑148 (MQ=2)
                                                                                                tttGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGCCCTGGTGTTCTGGCTCGGCATTAGCCTGTTGCTGTGCCAGCTTGCGTGTTTGGGCCCGGGGAATCGCTGCGTCTACGGCAGCtgaaccgggatcg                                                  >  1:613841/1‑139 (MQ=14)
                                                                                                 ttttgggcttgagCTCTGTCAATAGCCGCTGCTACTTCGGCTTTGCTCGGATCTAACTGTTGTTATGGCTCGTCATTAGCCTGTTGCTGTTCCAGGTTGAGTGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCg                                                  <  4:1485713/138‑1 (MQ=9)
                                                                                                       gcTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGGTTTACGAGGATCGACAACTTGTTCTGGGTCGTAATTATCCTGTTGATGTTCCAGATTGATAGGTTTGGCGAGGTCTATAGATACTTCGAATGCAGTTTTGCGTGGATCgggaaggg                                           >  8:560434/1‑144 (MQ=255)
                                                                                                            ggCGCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTtcttct                                      <  1:1447885/151‑1 (MQ=255)
                                                                                                              cgcGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGAGCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCCGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTgg                                    <  3:326282/149‑1 (MQ=14)
                                                                                                               tCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACCTCGTCTTCTgct                                   >  4:936137/1‑149 (MQ=255)
                                                                                                                ggggCAATAGCGTCTGGAACTGCGGCTGTTCGCGGATCGAACTGATGTTCTGGCTCGTCATTAGCCTGTTGCTGGGCCTGCTTGCTGGCTTTGGCTCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGtt                                  <  7:213560/150‑1 (MQ=14)
                                                                                                                cGGGCAATAGCCTCTGCCACGTCGTCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGTTATTAGCCTGGTGCTGTTCGTGTTTTCTTGCTTTCGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGtt                                  <  2:1586966/151‑1 (MQ=14)
                                                                                                                    cAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGAGGATAAACAACTTATTCTGGTTcct                               >  2:1275344/1‑149 (MQ=11)
                                                                                                                        aGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGGTCGGCATTAGCCTGTTGATGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCTGCTTCTACGGCGGGTTTGCGGGGATCCCCCACTGCTCCTGGTTCCGCagt                           >  5:601648/1‑148 (MQ=14)
                                                                                                                        aGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCTGCTTCTACGGCGGGTTTCCGCGGATCCGCCTGTGGTGCTGGGTcctgagt                           >  7:120393/1‑145 (MQ=11)
                                                                                                                        aGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTATTCTGGATCATCATTAGAGAGTAGATTTTCCAAATAGAGTGATTTTTAAAGTTCATTAGCGTCTTCGACGGATGATTTACTATAATCGACCTGTTCTTCTGGttgggcggt                           >  6:873090/1‑143 (MQ=2)
                                                                                                                           gtgttctactgtttgttttCGCGTATCTACCTGTTCTTCTGTCTTCGGATTAGCCTGTTGCTGTTCGTGTTTGCGTGCTTTTGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGcc                       <  8:412778/136‑1 (MQ=2)
                                                                                                                              ttCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCTGGTTTGCGGGGATCGCCATGTGTTGCTGCGTCCGCAttttgctgt                    >  3:827473/1‑144 (MQ=14)
                                                                                                                                 gACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGATTTGCGAGGATCGACCTGTTGTTCTGGTTCCGCATTAGACTGTTgt                 >  8:1398705/1‑150 (MQ=255)
                                                                                                                                  tatggggcTTTTGGCTGATGGACCTGGTGTTCTTCCTCGTTATTAGCCTGTTGCTGTTCGTGCTTTCTTGCCTTCGCGCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCCACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGc                 <  6:142418/145‑1 (MQ=9)
                                                                                                                                   cggcggCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCTCGGGCTTTAGCTGCTTCGACGGCGGGTTTACGGGGATCGCCATGTTGTTCTGGTTCCGTATTTTCCTGTTGGTg               >  3:1268798/1‑151 (MQ=11)
                                                                                                                                      cggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACCTGTTGTTCTGCTTCCTGATTAGCCTGTTGCTGTTc            >  4:1879328/1‑151 (MQ=255)
                                                                                                                                      cggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGATTTACGAGGATCGCCAACGTATTCTGCTTCCGAATTAGCCTGATGCTCTTc            >  6:1191874/1‑151 (MQ=11)
                                                                                                                                         cTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGGTTTGCGAGGATCGCCCTGTTGTTCTGGGTCCGCATTAGCCTGTTGGTGTTcc           >  3:1225351/1‑149 (MQ=11)
                                                                                                                                            tGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGAATTATCCTGTTGCTGTTCCAGAtt      >  5:237817/1‑151 (MQ=255)
                                                                                                                                              cgcgGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCCGATTTCCGAGGATCGGCATCTGGTTCTGCGTCCTCATTATGCTGTAGGTGTTCCTGCttcg    >  1:1871736/1‑149 (MQ=11)
                                                                                                                                              cgcgGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCGCGGGCAATAGCTGCTTCAACGGCAGGTTTCCGGGGATCACCATCTGTTTCTGCGTCCTAATTATCCTGATGATGTTCCAGGttcc    >  4:1444297/1‑149 (MQ=2)
                                                                                                                                                cgGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGGTTTGCGAGGATCGGCCTCGTGTGCTGCTTCCTTATTTTCCTGAAGATCTTCCAGCTTccgc  >  3:192290/1‑151 (MQ=2)
                                                                                                                                                  gATCAATCTGTTGTTCTGGCTCGGCATTAGCGTGTTGCTTTTGATGTTTTTTGGCTTTTGCTCGGGCAATAGCGGCGTCTACTGCGGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTgcgc  <  8:83998/149‑1 (MQ=11)
                                                                                                                                                      |                                                                                                                                                
TTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCC‑CGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGC  >  DH1/2169467‑2169760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑