| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 2,169,673 | 0 | A | T | 26.7% | 134.6 / 36.4 | 158 | R629R (CGT→CGA) | rsxC | electron transporter RsxC |
| Reads supporting (aligned to +/- strand): ref base A (39/57); new base T (4/31); total (58/100) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.47e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 159 total aligned reads displayed.
TGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCT > DH1/2169524‑2169820 | ttcgGGCTCCTCTTTAGCCTGGTGCTGTGCGCGTTTGCGCGCGTGCGCGCGGGCAATAGCGGCGGCCACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc < 4:452304/150‑1 (MQ=14) tctGGCTCCGCATTAGCCGGTTGCTGTTCGCCTTTGCGGGCGTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCa < 1:824864/150‑1 (MQ=14) tctGCCTCGGCATTATCCTTTTGCTGTGCGCGTTTGGGGGCGTGGGCTCGGGCAATAGCCGCGTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACggg < 5:317284/148‑1 (MQ=14) tctGCCTCCGCAAGACCCTGCTGCTGGTCGCGTTTGCGCGCGTTGGCGCGGGCAATAGCCGCTTCCACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCa < 5:1242267/150‑1 (MQ=14) ggctcgtctttAGCCTTTTGCTGTGCGGGTTTGTGGGCGTGTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa < 2:1207970/141‑1 (MQ=11) ggCTCCGCATTAGCCTGGTGCTGGGCCCGTTTGCTGGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAAt < 3:1827233/149‑1 (MQ=14) gccTCCGCATCAGCCTGGTGCTGGGCGCGTTTGCTGGCCTTCGCGCGGGCAATAGCGGCGGCGACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAg < 3:314836/149‑1 (MQ=14) ttCCGCTTTATCCGTTTGCTGTTCAAGTTTTATCTCTTTTGCTCTTGCATTAGCGGTTTCGATGTCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc < 8:323042/149‑1 (MQ=14) tCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGGTTTCCGGGGATCGCCAAGTTTTGCTGCGTCGGTAGTATCCTGTTGGTGTTCCTGGTTGCCTCGTTTCTCGCGGGCGATACCgg > 1:368061/1‑151 (MQ=255) ccgcaagacccGGGTGCTGGGCCCGGTTGCGGGCGTGCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg < 1:1332866/140‑1 (MQ=14) cGCATTAGCCTGTTGCTGTTCCCGGTTGCGCGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt < 7:1034989/151‑1 (MQ=255) ccactAGCCTTTTTCTTTTCCCCTTGGCGGCCTTTGGATAGGTCAATATCGGATACGACTGTTTCTTTCCTCGTAGCGATTTGGTGCTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCTGCtt < 8:850124/147‑1 (MQ=2) catgaccctggtGCTGTGCCCGTTTGCTGGCGTGCGCGCGGGCAATAGCGGCGGCCACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc < 3:1006093/140‑1 (MQ=14) ggtAGGCGGATGCTGGGCGCGGTTGCTGGCCTTTGCTCGGGCAATAGCCGCGGCCACGGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGGTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCg < 5:1579609/149‑1 (MQ=11) aTTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGGTTTACGCGGATCCACGTCATATGAGGCGTCGGCAGTACCCTCTACATGATCCAGCTTGCGTGCGTTGGCCCGGGCGATacaagcttcc > 5:1599106/1‑142 (MQ=9) aTTAGCCGGGTGCTGGGCCCGTTTGCGCGCGTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg < 5:878461/151‑1 (MQ=17) aTTAGACGGTTGCTGTTCACCTTTTCGTTATTTGTCTTTGGCTATAGCTGGCTCTTCGGATGTTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg < 2:1514323/151‑1 (MQ=9) ttAGCCTTTTGCTGTTCGCGTTTGCTGGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc < 8:101599/149‑1 (MQ=14) atcattttGCTTTTCCCTCTTGCGCTCTTTGTCGCGGTTAATAGCTGCGGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc < 8:117657/144‑1 (MQ=14) agctgtttGCTGTTCGGGTTTTTTTGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCGTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc < 2:1590883/144‑1 (MQ=14) ccttttGCTGTTCCTGTTTGTTGGCTTGGGCGCGGGCAATTGCGGCTTCTTCTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 8:158562/147‑1 (MQ=14) cctgTTGCTGTTCCTGCTTGCTCGCTTTCGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 4:1252511/148‑1 (MQ=14) gTTGCTGTTCGCGTTTTTGGGCTTTCGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggcg < 4:548158/149‑1 (MQ=14) gCTGTTCGCGGTTGCGGGCGTTGGCGCGGGCAATAGCGGCTGCGACTGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt < 1:1100508/151‑1 (MQ=14) gCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCtt < 8:1089004/150‑1 (MQ=255) gCTGTGCCCCTTTGATGGCGTTCGCGCGGGCAATAGCGGCTGCTACGGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt < 1:1692924/151‑1 (MQ=11) tGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTTCGCGGATCGCCCTGGTGTTCTGGGTCGGCATTAGAGAGATGATGTTCAACCTTGCGAGCTGTCGCCCGGGAACTAGCTGCTTCAACGGCTGTTTTgc > 3:276065/1‑151 (MQ=2) gttcgggttttttggcTTTTGCGCGGGCAATAGCGGCTGCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcg < 4:362754/137‑1 (MQ=14) gttcgagTTTGCGGGCTGGCGCTCCGCCATTAGCGGCTGCGACGGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTg < 5:727656/143‑1 (MQ=14) gggcgcGTTTGCGGGCGTGGGCTCGGGCAATAGCCGCTTCCACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgc < 3:1228108/145‑1 (MQ=11) gcccGCTTCCGAGCTTGCGCGCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg < 5:841894/150‑1 (MQ=11) cgggTTTGCTCGCGTGCGCGCGGGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCgg < 5:1185799/148‑1 (MQ=11) ccgcgtGCGCGCTTTTGCTCGCCCAAGAGCGGCTTCGACCGCGCCTTTGCGCTGATCCCCGTCGTCGTCTGGCGCTGCTTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa < 5:94287/146‑1 (MQ=11) gttttctagcTTTGGCTCTGTTAATAGCCTCTTCGAGGTTGGGTTTGCGCGGATCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 4:297692/143‑1 (MQ=11) gcttgagggcatttgCTAGGGCAATATGCGCGTCGTCGGGAGCTTTGGGATGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTGCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 3:144315/137‑1 (MQ=14) gTTTGTGGGCGTTCGCTCGGGCAATAGCCGCGGCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGGTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 2:1468132/151‑1 (MQ=14) gTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCTGATCGCAATGGGGTTCTTGTTAGGAATTATCCTGTTGCTCTTGCTGCTTTCGCGGGTTGTGCCGGGAAATAGCTGCTTCGACGGCGGGTTTGCggggctg > 3:284143/1‑148 (MQ=2) ttttgggcttgagCTCTGTCAATAGCCGCTGCTACTTCGGCTTTGCTCGGATCTAACTGTTGTTATGGCTCGTCATTAGCCTGTTGCTGTTCCAGGTTGAGTGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCg < 4:1485713/138‑1 (MQ=9) tGCGCGCTTTCGCGCGGGCCAGCGCCGCGTCGACGGCGTCTTTGGGCGGATGTACCTGGTGGTGTGGCTCCGAAGTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg < 3:899605/149‑1 (MQ=11) gtggccttagCTCGTGCAATAGCCGCTGCAACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAcc < 6:1282213/141‑1 (MQ=11) cgggcgttGGCGCGGGCAATAGCGGCGGCAACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt < 3:360704/145‑1 (MQ=14) tggcTTTCGCTCGTGCAATAGCCGCGGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAACt < 4:6666/148‑1 (MQ=14) cgcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACATCTTGTTCTGGGTCGTAATTATCCTGAAACATATCAAGCTTGAGGGCTTTGGAAAGGGCGATAACAGATTAGAAGGACTCTTTGCGAGGAtaatcatgt > 2:603403/1‑143 (MQ=2) gcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCATCTTGTTCTGGGTCGTGATTAGCATGTTGCTGGTCAAGCTTGCGCGCGTTGGCCAGTGCTATAGCTGCTTCGCCGGCTGCTTTTGGAGGATCAACCTggt > 7:195520/1‑149 (MQ=2) ccgttgcgcGGGCAATAGCCGCTGCTACTGCGGCTTTGCGCGGATCCACCTGGTGTTCTGGCTCGGCATTATCCTGTTGCTGTTCCAGCTTGCGTGCTTTCGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGttc < 1:1198436/143‑1 (MQ=14) ttGGCTCTTGCTATCTCGGCGTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCTGCTTCAACGGCAGTTTTACGTGGATcagcaacggtt < 8:1187078/150‑11 (MQ=18) ggCGCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTtcttct < 1:1447885/151‑1 (MQ=255) tCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACCTCGTCTTCTgct > 4:936137/1‑149 (MQ=255) ggggCAATAGCGTCTGGAACTGCGGCTGTTCGCGGATCGAACTGATGTTCTGGCTCGTCATTAGCCTGTTGCTGGGCCTGCTTGCTGGCTTTGGCTCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGtt < 7:213560/150‑1 (MQ=14) cGGGCAATAGCCTCTGCCACGTCGTCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGTTATTAGCCTGGTGCTGTTCGTGTTTTCTTGCTTTCGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGtt < 2:1586966/151‑1 (MQ=14) cggcacacgccgccgcGACCGCGCCTGAGCGCGGAGCCACCTGTTGTTCTTGTTCCGCAGTCGCCTGTTGATGTGCCAGCTTGGTTGCTTTGGCTAGTGCACTAGCGTGGTCTACGGATGCTTTGCGCGGATCGACCTGTTCTTCTGGTTc < 1:1328676/136‑1 (MQ=2) cAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGAGGATAAACAACTTATTCTGGTTcct > 2:1275344/1‑149 (MQ=11) cAATAGCGGCTGCAACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATAAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGc < 3:659627/151‑1 (MQ=255) ccgccgcggccccggccgCGTTGCGCGGATCTACCTGATGGTCTGGAACGGCATGCGCCTGGAGCTCTGGCAGGTTCGGTGCGTTGGCTCGTGTAATCGCCTCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCAtt < 7:376539/139‑1 (MQ=9) aGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCTGCTTCTACGGCGGGTTTCCGCGGATCCGCCTGTGGTGCTGGGTcctgagt > 7:120393/1‑145 (MQ=11) aGCGGCCTCGACGGCCGCCGTGCGCGCATCCCAGCGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTa < 1:566857/151‑1 (MQ=11) gccgcggcgtctgcggcTTTCCGCGGAGCTAACTGTTGTTCTGGCTCGGCTTTATCCTGTTGCTGTTCGAGCTTGGGGGCGTGGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTa < 5:1673841/138‑1 (MQ=14) gtgttctactgtttgttttCGCGTATCTACCTGTTCTTCTGTCTTCGGATTAGCCTGTTGCTGTTCGTGTTTGCGTGCTTTTGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGcc < 8:412778/136‑1 (MQ=2) gcgtctactgcggaTTTGCGGGGTGCTACGTGTTGTTCTGGCTCGGCATTAGCCTTGTGCTGGTCGCGTTTGCGTGCTTTTGCTCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGc < 3:1734272/140‑1 (MQ=9) gCTTCGACTGCGGCTTTGCGCTGAGCGACGTGTGGTTCTGCGTCGGCTTTAGCGTGGTGCTGTTCGCGGTTGCGGGCGTTGGCTCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCt < 1:1437412/151‑1 (MQ=11) tatggggcTTTTGGCTGATGGACCTGGTGTTCTTCCTCGTTATTAGCCTGTTGCTGTTCGTGCTTTCTTGCCTTCGCGCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCCACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGc < 6:142418/145‑1 (MQ=9) cggcggCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCTCGGGCTTTAGCTGCTTCGACGGCGGGTTTACGGGGATCGCCATGTTGTTCTGGTTCCGTATTTTCCTGTTGGTg > 3:1268798/1‑151 (MQ=11) cggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACCTGTTGTTCTGCTTCCTGATTAGCCTGTTGCTGTTc > 4:1879328/1‑151 (MQ=255) cggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGATTTACGAGGATCGCCAACGTATTCTGCTTCCGAATTAGCCTGATGCTCTTc > 6:1191874/1‑151 (MQ=11) tGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATCGCCAACGGGTTCTGGGTCGGGAGTAGCCTGATGCTCTTcctgatt > 1:736110/1‑146 (MQ=11) tGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGAATTATCCTGTTGCTGTTCCAGAtt > 5:237817/1‑151 (MQ=255) cgcgGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCCGATTTCCGAGGATCGGCATCTGGTTCTGCGTCCTCATTATGCTGTAGGTGTTCCTGCttcg > 1:1871736/1‑149 (MQ=11) cgcgGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCGCGGGCAATAGCTGCTTCAACGGCAGGTTTCCGGGGATCACCATCTGTTTCTGCGTCCTAATTATCCTGATGATGTTCCAGGttcc > 4:1444297/1‑149 (MQ=2) cGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCCACGGCAGCTTTACGAGGATCAACAACTTGTTCTGCTTCCTGATTATGCTGAAGATGTTCCAGATTgccacatg > 8:1302517/1‑144 (MQ=2) ccTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCCATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCACTGGTTCTGGTTCCTTAGTTTGCTGTTGGTGTTCCAGGTTccggcggtgttg > 3:409960/1‑142 (MQ=11) ccTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGTGCAATATCCGAATCGACGGCGTCTTAGCTCGCCTCACCTTCATCTTGTGCCTAAGCATTAGACTGTTTCATTTAAAAATTGCGCGCTTTggg > 7:1537472/1‑150 (MQ=2) cTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGCTCGCCGTGTGGTTCTGGTTCCGGATTATCCTGTTGCTGTTCATGCTTgcgagaggatgcc > 3:776827/1‑141 (MQ=11) gttgttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGCCCTGTTGTGCTGCTTCGGCATTAGGCTGTTGGTGTTCCAGCTTgcggggtgtgtcccg > 5:572766/1‑139 (MQ=11) tgttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCCACGGCGGCTTTCCGAGGATCGCCATCTTGTTCTGGTTCGTGATTATCCTGTTGGTCTTCCAGATTGCGGGTGTTGGccccgt > 7:995784/1‑146 (MQ=2) ttattgctcgtttttATCCTTTTGCTGTTCGTGTTTTTTTGCTTTTGCTCGGGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGc < 8:1322673/137‑1 (MQ=2) ttttgttcgtttttATCCTGTTGCTGTTCGTGTTTTTTTGCTTGTGCGCGGGCAATAGCGGCTGCTACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCa < 6:275168/138‑1 (MQ=11) tCTGGCTCGGCATTAGCCTGTTGCTGTTCAAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGGGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCa > 7:640531/1‑150 (MQ=11) cgccgcgcccccccccTGCTCCTGTTCCAGCTTGCTTTTTTTTTCTCTTGCAATATCCGCTTCGAGGTCCTCTTTGCTATTATCTATCTGTTCTTATGTCGCTGTTTTTCTCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATa < 6:966510/137‑1 (MQ=2) ggccctcccgaGCGTGCTGCTGGGCGAGGTTGCGGGCGTTGGCGCGGGCAATAGCCGCGTCCACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGc < 7:1575086/141‑1 (MQ=11) cctccagtAGCCTGTTGCTGTTCCAGTTTTTCTGCTTAGGCCCGGGAAATAGAGGCTTCGAAGTCTTCTTTGCGAGGATCTACCTGTTGTTCTTGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCgg < 2:323354/144‑1 (MQ=2) ccgCATTAGCCTTTTGATTTTCCAGGTTGCGCTCTTTGTCAATGTCAATAGTTCCTTCGATTTCGGCTGTGCTCGGTCTGACGTGCTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGc < 8:560808/149‑1 (MQ=2) ccttACCCTGGTGCTGTTCCAGTTTTCTTTATTTTTCGCGGTCAATAGAGTCTTCGACTTATGTTTTGAGTGTATCCATCTTCTCCTCTGTTGCGTTATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCTGCTTc < 6:1648978/149‑1 (MQ=2) ccgccgccggctgctCCACCGCGCGTGCGTTGGCCCCGGCAATAGCGTCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGGTCCGCATTAGCCTGCTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAc < 1:383435/142‑1 (MQ=14) ccccccggtccctctCCCGCTCGCGTGCTTTGGCTCGTGCAATAGCTGCTTCGACGGCTGCTTTGCGCTGATCTACCTTTTCTTCTGGTTCCTCATTAGCCTGTTGCTGTTCCAGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc < 6:565047/137‑1 (MQ=11) ccTGGTGCTGTTCCAGGTTGCGTGCTTTGGCGCGGGCAATAGCCGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 5:1812167/151‑1 (MQ=14) ttGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGGCCTGTGGTTCTGGTTCGTGATTTTGCTGTTGGTGTTCCTGGTTGCGGGGTTTTGGCCGGGGAATTGCTGCTTCCACGGCCGCt > 7:1749102/1‑151 (MQ=2) tGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGACATGGTGTTCTGCTACCGAATTATGCTGTTGGTGTTCCAGGTTCCCCCGTTTGGCGGGGGCAATACCGTCttaaccggaggcat > 3:466220/1‑139 (MQ=2) gggtCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCGGCTTCGACGCCTGCTTTGCGCGGATCGACCTGTTCTTCTGGTCCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgc < 5:858236/148‑1 (MQ=255) ttCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTGGTGCTGGTTCGGCATTAGCCTGTTGGTGTTCCAGCTTGCGCGATGTTGCCCGGGCAATAGCTGCTTCTACGTCGGGTTTccgg > 7:1747117/1‑150 (MQ=11) gccgcgtttcgtgcgtgGGCGCGGGCAATAGCCGCTGCGACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg < 1:540726/142‑1 (MQ=14) aGCTTGCGTGCTTTGGCTCGTGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCTACCTGTTCTTCTGTTTCCTCATTATCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt < 8:762221/151‑1 (MQ=14) aGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGGCCTCTTGTTCTGGTTCCGCATTAGCCTGTTGCTCTTCCAGCTTGCGAGATTTGGCACGGGAAATAGCTTCTAACACGGCAGCTTAgcgttgat > 4:1513929/1‑146 (MQ=11) aGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGGATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCTGCTTCTACGGCGGGTTTGCGAGGAt > 1:424658/1‑151 (MQ=14) gCTTGGGTGCTTTGGCTCTTGCAATAGCTTCTGCGTCTTCCGCTTTTCGAGGATCTACCTCTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 4:928190/151‑1 (MQ=11) tGCGTGCTTTGGCACGGGGAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATcctc > 5:1510039/1‑148 (MQ=255) tGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCCAc > 1:1594771/1‑151 (MQ=255) tGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCTACGGCGGTTTTGCGAGGATCTAc > 1:957301/1‑151 (MQ=255) tGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc > 3:941723/1‑151 (MQ=255) cGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGAGGATCGACCTCGTGTTCTGGTTCCGAATTATCCTGTTGCTGTTCCAGCTTGCGCGGTTTGGAGCGGGCAATAGCGGCTTCTAGGGCAGGTTTGGGAGGAtaagcct > 6:484241/1‑145 (MQ=11) ggCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCTATAGCTGCTTCGACTGCGGCTTTGCGAGGATCGACCTGTGGTTCt > 7:578480/1‑151 (MQ=14) | TGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCT > DH1/2169524‑2169820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |