Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5770TG37.5% 178.4 / 83.4 240R661R (CGA→CGC) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base T (37/108);  new base G (16/71);  total (60/180)
Fisher's exact test for biased strand distribution p-value = 2.59e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 240 total aligned reads displayed.

GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGG  >  DH1/2169429‑2169726
                                                                                                                                                    |                                                                                                                                                      
gTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTc                                                                                                                                                       <  6:1663961/150‑1 (MQ=255)
gTTCTTCTGGGACCGCATGAGCCTGTTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTc                                                                                                                                                       <  7:1687481/150‑1 (MQ=255)
     tctGGTTCGTCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTTGCTCCGCATTAGCCGGTTGCTGTTCCGGTTTGCGCGCTTTGGCTCGGGc                                                                                                                                                   <  8:1834803/149‑1 (MQ=17)
        gggaCCGCATGAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCa‑a                                                                                                                                                <  6:703321/145‑1 (MQ=255)
        ggTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAg                                                                                                                                             <  5:20430/151‑1 (MQ=255)
           cccGCATTAGCCTGGTGCTGGGCCCGCTTGCGGGCCTTGGCGCGGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCgg                                                                                                                                          <  1:482562/150‑1 (MQ=21)
            ccGCATTAGCCTGGTGCTGTGCCAGCTTGCGGGCTTTGGCGCGGGCAATAGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGc                                                                                                                                         <  2:595335/151‑1 (MQ=25)
             cGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCt                                                                                                                                        >  3:650099/1‑151 (MQ=255)
              gCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCtt                                                                                                                                       <  3:459113/151‑1 (MQ=255)
                  tAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCGGCTTAGAACGCAGCATTGAGCGGATCGACCTGTTGTTCTGGATCAGCATTAGCCTGTTGCTGTTCCCGATTGCGAGATTTGGCTCGGGCG‑ATAGCTGCTTCg                                                                                                                                     >  8:1078144/1‑149 (MQ=11)
                  tAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCGCTGCTGCTGGCTCGGAATTAGACTGTGGCGGGTCCAGCTTGCGGGCGTTGGCGCGGGCC‑ATAGCTCCTTCGAc                                                                                                                                   >  1:701563/1‑151 (MQ=11)
                    gCCTGTTGCTGTTCCTGCTTGCTTGCTTGGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGAcgg                                                                                                                                 <  4:672518/151‑1 (MQ=255)
                    gCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCTGCTTTGCGCGGCTAGAACTGTTATTCTGGATCCGCATTAGCAGGTTGCTGTTCGAGATTGATCGCTTTATCTCGGGCA‑ATAGCGGCTTCGAcgg                                                                                                                                 >  8:1721186/1‑151 (MQ=11)
                    gCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGTGAAAAACCCGCTTCTCCGGACGCTTAGCCCGGCTGTAGCTCTTCTTCTGGCTGCGGATTGGAATGTTGCTGTTCCCGGTTGCGCGGTTTGGGAGGGGCA‑GGGGCGGCGTcggcgg                                                                                                                                 >  5:1235358/1‑151 (MQ=2)
                    cccTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGAcgg                                                                                                                                 <  5:1432437/150‑1 (MQ=255)
                     ccTGGTGCTGGGCCCGCTTGCGGGCTTTGGCGCGGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCA‑ATAGCGGCTTCGAcggc                                                                                                                                <  4:1565425/151‑1 (MQ=14)
                      cTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCGGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGCcggcg                                                                                                                               >  7:699511/1‑151 (MQ=255)
                        ggtGCTGTGCCAGGTTGCTTGCTTTGGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACggcggc                                                                                                                             <  4:761612/149‑1 (MQ=255)
                        gTTGCTGTTCCAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGAcggcg                                                                                                                               <  5:778770/149‑1 (MQ=255)
                        caccccgctCCCGCTTCCGTGCTTTTTTTCTTGCAATAGGGGCTTCCACGTCATCTTTTCTATGATCAACCTTTTTTCCTTTCTCGTCTTTATTCTGTTGTTGTTCCAGCTTGCGTGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACggcggc                                                                                                                             <  4:1352380/143‑1 (MQ=2)
                          tGCTGGACCAGCTTGCGGGCTTGGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCt                                                                                                                            <  3:754682/150‑1 (MQ=255)
                           gCTGGTCCACCTTGCGTGCTTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCtt                                                                                                                           <  7:1574143/150‑1 (MQ=255)
                             tGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAAGCTCTTCTTCTCGCTCCGCAGTAGCCGGTTCCTGTGTCAGTTTGAGCGATTTGGCGGGGGCC‑ATAGATGATTCAACGGGGGGTTTgc                                                                                                                        >  3:1281482/1‑151 (MQ=14)
                              gttcgtggttGCGGGCCTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTgcg                                                                                                                       <  2:812155/143‑1 (MQ=17)
                              ggtCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTgc                                                                                                                        <  5:1850575/148‑1 (MQ=255)
                              gTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCAGATCTTCTGCCTCCACATTAGCCCGATGCTGATCCCGCTTGCGCGCTTTGGCACGGTCA‑TTAGCGGATTCGACGGCGGCTTTgcg                                                                                                                       >  7:4577/1‑151 (MQ=14)
                              gTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTgc                                                                                                                        <  5:676849/150‑1 (MQ=255)
                                 cctcctttcttGCGTTTGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGcgcg                                                                                                                     <  2:1009103/140‑1 (MQ=17)
                                 ccAGCTTGGGTGCGTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGcgcg                                                                                                                     <  1:569487/150‑1 (MQ=255)
                                   cgCTTGCGGGCGTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                  <  5:374514/150‑1 (MQ=255)
                                   atcttgattGCTTTGGCTCGTGCATTTTCAGTTTCGTTTGCAGCTTTTCGCTTATCTACGTGTTTTGGTGGTTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGa                                                                                                                   <  6:35673/142‑1 (MQ=9)
                                    gtttGGGTGCGTTGGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                                 <  6:1522415/149‑1 (MQ=17)
                                    gCTTGGGGGCGTGGGCGCGGGCAATAGCCGCGGCGACTGCAGCTTTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                                 <  1:1406907/151‑1 (MQ=17)
                                    gCTTGCGGGCGTGGGCGCGGGCAATAGCCGCGGCGACGGCCGCTTCGCGCGGATCAACCTGGGCTTCTGGCTCCGCATTAGCCGGGTGCTGTGCCCGTTTGCGCGCGTTCGCGCGGGCA‑ATAGCGGCGTCGACGGCGGCTTTGCGCGGATc                                                                                                                 <  5:1357918/151‑1 (MQ=14)
                                    cgcttctggccttcgcgcGGGCAATAGCGTCTTCTACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCTTCATTAGCCTGTTGCTGTTCCAGTTTGCGTGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                                 <  2:1713320/137‑1 (MQ=1)
                                       tgctggcgttGGCGCGGGCAATAGCCGCTGCGACGGCAGCGGTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg                                                                                                                <  1:1044956/141‑1 (MQ=17)
                                       tgcgggcgtgcgcgcGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg                                                                                                                <  1:934325/138‑1 (MQ=255)
                                       tGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg                                                                                                                <  1:306426/149‑1 (MQ=255)
                                        gcgggcgtgcgcgcGGGCAATAGCCGCTTCCACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc                                                                                                              <  3:953022/140‑1 (MQ=17)
                                        gCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGATTTGCGAGGATCAACCACTTATTCTGGGTCAGAAATAAACAGATTCTTTTACCGATTGAGAGATTAGAATAGGGAA‑ATAGAGGCTTCTACGGCTGtttttataaaatcaac                                                                                                              >  2:1904711/1‑138 (MQ=255)
                                          gTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGGGCTTAGGGGGGGGGA‑GGGGCGGGTTGGGCGGCGGGGTTGCGCGGATGGACCtg                                                                                                           >  8:1955581/1‑151 (MQ=14)
                                                  gcgcGTGCAATAGCCGCTGCGACGGCAGCTTTGCGAGGATCTACCTGTGCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                   <  1:521339/151‑1 (MQ=14)
                                                  ccaccgcgcaTAGCCGCTGCGACGGCAGCTTTTCGCTTTTCAACCTGTTCTTCTGCTTCCTCATAAGGCGCGTGCTCTTCAGGCCTGCCCGCTGTTGTTCCGGCA‑TTAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                   <  5:991205/142‑1 (MQ=2)
                                                   cgcgTGCAATAGCCGCTTCGAGGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGTGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTgg                                                                                                  <  1:365497/151‑1 (MQ=255)
                                                      gggCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGATCCTCATTAGCCTGTTGCTGTTCCAGTTTGCGCGCTTTGGCGCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTc                                                                                               <  2:1107932/149‑1 (MQ=11)
                                                      gggCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGGTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTc                                                                                               <  7:1726839/149‑1 (MQ=255)
                                                         cccgcgCCGCTGCCCCGCCAGCGTGGCGCGGAGCCACCTGTTCTTCTGGCTCGGCATTAGCGGGTTGCGGTTGCAGGTGGCGCGAGTTGCGTGGCGCA‑CTCGGGGCTTCGCCGGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGc                                                                                            <  5:348049/146‑1 (MQ=2)
                                                           aTAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAt                                                                                          <  4:650186/151‑1 (MQ=255)
                                                            tAGCCGCGGCAACTGCCGCTTTGCGCGGATCCACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCA‑ATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGCGCGGTTGTGCTGGcggcggctg                                                                                         >  3:1367260/1‑143 (MQ=14)
                                                             aGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCCGTTTGCGGGCTTTTGCTCGGGCA‑ATAGCTGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAtt                                                                                         <  7:541731/150‑1 (MQ=17)
                                                             aGCCGCGGCGACTGCAGCTTTGCTCGGATCAACCTGTTCTTCTGGATCCGCATTATCCGTTTTCTGTTCGCGTTTTCTGGCGTTTGCGCGGGCA‑ATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa                                                                                        <  2:309826/151‑1 (MQ=14)
                                                               ccGCTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCTCATTAGCCTGTTGCTGTTCCCGTTTGCGGGCTTTGGCGCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGc                                                                                      <  2:1493240/151‑1 (MQ=14)
                                                               ccGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGc                                                                                      <  7:884349/151‑1 (MQ=255)
                                                                 gcgtccaCGGCAGCTGTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGGTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCt                                                                                    <  1:810037/145‑1 (MQ=255)
                                                                 gCTTCGACCGCAGCTTTGCGCGGATCAACCTGTTCTTCTCGCTCCTCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCt                                                                                    <  8:701068/151‑1 (MQ=11)
                                                                     caaCGGCAGCTGTGCGCGGAGGAACCTGGTCATCTGGGCGCTCATTAGCCTGGTGCTGTTCCCGTTTGCTGGCTTTGGCGCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg                                                                                <  1:1806769/149‑1 (MQ=14)
                                                                       cccgccgCTGTGCGCGGATCAACCTGTTCTTCTGGCTCCGCCTTCGCCGGATGCTGTTCCATGTGGCGTGAGTTGTGTGGTGCA‑CTAGCGGCTGCGACCTCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCt                                                                              <  1:1238615/145‑1 (MQ=9)
                                                                          gccgCTTTGCGCGGAGCCACCTGGTCTTCTTGCTCCTCATTAGCCTGGTGCTGTGCGCGTTTGCTCGCTTTCGCGCGGGCA‑ATAGCGGCTGCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTg                                                                             <  3:1117073/146‑1 (MQ=14)
                                                                          gCAGCTTTGCGCTGATCTACCTGTTCTTCTGGCTCCTCATTAGCCTGTTGCTGTTCGCGTTTGCGGGCTTTGGCGCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGtt                                                                           <  8:1423381/151‑1 (MQ=14)
                                                                              cgttcggcgtatgtaCCTGATCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCGCGTTTGCGGGCTTTGGCGCGGGCA‑ATAGCGGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAg                                                                       <  2:435522/137‑1 (MQ=14)
                                                                              cattGCGCGGATAAAACTCTGCTTCTGGCTCCGGACTAGCCCGTGCGTGGTGACGGGTGCTAGCTGGGGCTCTGGCA‑AGAGCGGCGGCCACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAg                                                                       <  7:828767/149‑1 (MQ=9)
                                                                              cTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGACGGTTGATGTTCCCGATTGCGAGCTTTCGCGCGCGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGGTCGGCATTAGCGTGGGGCTGTGcccg                                                                       >  7:1753415/1‑149 (MQ=14)
                                                                                gtGCTCGGATGAAATTGTTCTTCTGGCTCGGCTTTAGCCTGGTGCTGTTCGCGTTTGCGGGCTTTGGCGCGGGCA‑ATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCt                                                                     <  6:441684/150‑1 (MQ=14)
                                                                                 tGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCTGCTTCCACGGCCGCTTTGCGGGGATCCGCCTGGTGTTCTGGGTCGGTATTATCCTGTTGCTCTTCCAGCtt                                                                    >  3:291387/1‑151 (MQ=18)
                                                                                 tGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGAGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGGAGAGGTGGTGAGGCTGGGAAGTAGACTGTTGCTGTTCGAGCtt                                                                    >  2:849197/1‑151 (MQ=14)
                                                                                  gcgcTGATCATCTTGTTCTTCTGGCTCCTCTTTATCCTGCTGCTGGTCGCGTTTTCGGGCTTTCGCGCGGGCA‑ATAGCGGCGTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTg                                                                   <  4:233645/151‑1 (MQ=14)
                                                                                   cgcgGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGa                                                                                                                                    >  3:826397/1‑85 (MQ=255)
                                                                                    gctgagctacctcgtcttctTGCTCCTCATTACCCTGTTGCTGTTCCCCTTTTCTCGCCTTCGCGCGGGCA‑ATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCg                                                                 <  3:1686366/137‑1 (MQ=14)
                                                                                     gggAGCAACATGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTCGCGCGGGCA‑ATAGCCGCTTCTACTGGGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGt                                                                <  7:668625/150‑1 (MQ=14)
                                                                                       gaggaaCCTGTTGTTCTTGCTCGTGATTAGCCTGTTGCTGGTCGGGTTTGCGCGCGTTGGCGCGGGCA‑ATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGt                                                                <  1:182900/145‑1 (MQ=11)
                                                                                         acgagcTGATCTTCTGGCTCCGGAGTAGACGGGTGCTGTCCCCGGTTGCGCGCTTTGGCTCGTGCA‑ATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCtt                                                            <  7:1952121/146‑1 (MQ=14)
                                                                                          cAACCTGTTCTTGTGGCACGGCCTTTGCGGGATGCTCGTCCCGGATGGGCGCGTTGCGTGCTGCA‑TTCGGGGCTTCGCCGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCttt                                                           <  5:391484/151‑1 (MQ=9)
                                                                                           cccctccccgccgcgCTCCCCATCAGCCTGTTGCTGTTCCAGCTTTTGTTCTTTGTTACGGGCA‑ATAGCGTCTTCTACTGTTTCTTTTCGCGTATCTACCTCTTCTTCTGGCTCCGGATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTg                                                          <  6:1237240/137‑1 (MQ=2)
                                                                                               ggatcttctGGCTCCGCATTAGCCTGCTGCTGGTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCAc                                                      <  3:1583425/148‑1 (MQ=255)
                                                                                                 gtcttcgGGCTCCGCAAGAGCCTGGTGCTGGTCCCGTTTGCGCGCGTGGGCGCGGGCA‑ATAGCGGCGTCCACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACgg                                                    <  3:1386205/150‑1 (MQ=14)
                                                                                                   gttctGGCTCCTCTATACCCTGGTGCTGGTCGGGTTTGCTGGCTTGCGCGCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACggg                                                   <  2:1411983/149‑1 (MQ=14)
                                                                                                        ggCTCCGCATTAGCCGGTTGCTGTTCGCGTTTGCGCGCTTTTGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa                                              <  8:436181/150‑1 (MQ=255)
                                                                                                        ggCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAGATCG‑GGATACGACGCCTCGTATGAGCGGAGCGCGCTCTTGTTCTCGTTGGGCGTTTGCGTGTTGATCTTAAAGCTTGCGGGCGGTGGcggggggcgggg                                             >  1:1565962/1‑140 (MQ=255)
                                                                                                        gccTCCGCAAGAGCCTTGTGCTGTTCCGGTTTGCTCGCGTTCGCGCGGGCA‑ATAGCGGCGGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATac                                             <  1:1120293/149‑2 (MQ=11)
                                                                                                         gcacgtccttAGTCGGTTGCTGTTCGGGTTTGTGGGCTTTTGCGCGGGCA‑ATAGCGGCTTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc                                            <  4:334081/143‑1 (MQ=14)
                                                                                                            cgtttttatccttttGCTGTGCGGGTTTGTTCGCTTTTGCGCGGGCA‑ATAGCCGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCgg                                          <  2:144058/137‑1 (MQ=14)
                                                                                                            ccGCATGAGCCTGCTGCTGTGCGCGTTTGCGCGCGTGCGCGCGGGCA‑ATAGCCGCTTCCACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCgg                                          <  5:1636017/150‑1 (MQ=14)
                                                                                                             cgcaggcgCCGGCTGCTGTTCCCGTTTGCGCGCTTTGCCGCGCGCA‑ATCGCCGCTTCGACGGACTCGATGCGAGCCTCGACCTCTTCCGATGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt                                        <  7:506470/144‑1 (MQ=9)
                                                                                                             cGCATTAGGAGGCTGTTGGTCTCTTTTGCTGGCTTTTGCTCGGGCA‑ATAGCCGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCt                                        <  4:950898/151‑1 (MQ=11)
                                                                                                              gCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCTGCTTCGACGGCGGCTTTGCGAGGATCGACATCGTGTGCTGGCTCGTAATTTTCCTGTAGCTCTTCCAGTTTCCGTGTTTTGTCCGGGGGAATACCTGCtt                                       >  7:415832/1‑151 (MQ=255)
                                                                                                                aTTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTCAGTGCTTTGGCACGGGCTATAGCGGCTTcc                                     >  7:429712/1‑150 (MQ=255)
                                                                                                                   ggcctgcagccgtggccGCTTGCGAGCTTGCGCGCGGGCA‑ATAGCCGCGTCCACTGCCGCTTTGCGCGGATCCACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAcg                                  <  7:1196762/136‑1 (MQ=11)
                                                                                                                   ggCCGGTTGCGGTGCCCGTTTGCGGGCGTTGGCGCGGGCA‑ATAGCGGCGGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg                                  <  3:666708/150‑1 (MQ=14)
                                                                                                                   aGCCTGTTGCTGTTCACGACTGCGTGCGTTTGTGCGGGCA‑ATAGCCGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc                                   <  2:1342248/150‑1 (MQ=11)
                                                                                                                      cGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCGGCTGCGCcggcg                               >  7:110520/1‑151 (MQ=255)
                                                                                                                        cctcctgagcccGCTTGCGCGCTTTGGCTCGTTCA‑ATAGCCGCTTCGACGGCCGCTTTGAGCGCATCGAGATGTTCTTCTCGCTCGGCACTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc                             <  3:1833415/142‑1 (MQ=14)
                                                                                                                              gTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCCGCTTTGCCCGCATAGCCCTGTTCTGATCTCTAGTCAGTTGGCAGTTGCTCGTAAAGCTTGAGAGCTTTGGCAATGCAAATAGCGGCTTCGACGGCGGGttgggg                       >  5:891294/1‑147 (MQ=9)
                                                                                                                                 cccGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTggtt                                                                                                >  3:1182949/1‑73 (MQ=38)
                                                                                                                                   cGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCTGCTTCGACGGCGGGTTTGCGGGGATCGGCATGGTGTTCTGGGTCGGGATTAGAGTGTTGGTGTTCAAGGGTGAGCTCTTTTGCCCGGGCATTAGCTGGTTTGCCGgctgctgttagatgat                  >  7:963035/1‑141 (MQ=255)
                                                                                                                                    gTTTCCGCGCTGTGCCTCGGGCA‑CACGCGGCTGCGCCGGCGCCGTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                 <  1:844867/151‑1 (MQ=14)
                                                                                                                                    ccctccccgccgcgccTCGGCCC‑ATAGCCGCGGCCACTGCGGCTTTTCTCTTATCTACCTGTTCTTCTGTCTCCTCATTATCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGTCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATc                 <  6:217729/136‑1 (MQ=2)
                                                                                                                                     gttGCGCGGTGCGGCGCGTGCA‑GTAGAGGCGTCGGCGGCTGCGATGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg                <  1:1781296/150‑1 (MQ=11)
                                                                                                                                         cgcgcTTTGGCTCGGGCA‑ATAGCGGCTTCCACGGCGGGTTTGCGGGGATAGAGCTGTAGTGCTCCCTGCTCAAAACCCTGTAGCTGTGCCACCATGCTATCTTTGGCTCTGGGGTTATAAGATTCGACGGCGGGTTTGCGGGGagtgcgcg            >  7:129378/1‑144 (MQ=255)
                                                                                                                                            gcTTTGGCGCGGGCA‑ATAGCCGCTTCTACTGCCGCTTTGCGCGGATGTACCTGTTCTTCTGGCTCGGGATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGtt         <  6:792738/151‑1 (MQ=11)
                                                                                                                                                   cTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACATGTTGTTCTGGGTCGGAATTAGCCTGTTGGTCTTCCAGCTTCCGTGCTTTTTAGCTGGCAATAGCGGCTTCTACGGCAGGTTTGCGAGGATcagcataggtttctgg  >  4:116544/1‑136 (MQ=2)
                                                                                                                                                    |                                                                                                                                                      
GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCA‑ATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGG  >  DH1/2169429‑2169726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑