Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5480GT30.6% 502.2 / 82.1 276P671Q (CCG→CAG) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base G (36/152);  new base T (8/75);  total (48/228)
Fisher's exact test for biased strand distribution p-value = 5.16e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 281 total aligned reads displayed.

GCGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGG  >  DH1/2169398‑2169698
                                                                                                                                                        |                                                                                                                                                      
gcgGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCg                                                                                                                                                        <  1:1496311/151‑1 (MQ=255)
gcgGCAACTGCCGCTGTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGGGTGCTTTGGCGTGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCg                                                                                                                                                        <  7:984913/151‑1 (MQ=255)
  gggaagtGCCGCTTTGCGGCGATCAACCTGTTCTTCTGGGTCCGCTTTAGCCTGTTGCTGTTCGTGCTTGCGTGCGTGGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGt                                                                                                                                                      <  8:1448112/145‑1 (MQ=37)
  ggCATCTGCCTCTTTGCGCTGATCAACCTGTTCTTCTGGTACGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTGGGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGTCTCCGC‑ATT‑ATCCGGt                                                                                                                                                      <  8:545926/151‑1 (MQ=18)
   gCAACTGCGGCTTTGCGCGGATCAACGTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGtt                                                                                                                                                     <  7:1251949/151‑1 (MQ=255)
    cAACTGGCGCTTTGCGTGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCTGCTTGCGTGCTTTGGCGCGTGCAATTGCCGCTTCGACGGGAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTg                                                                                                                                                    <  8:185661/151‑1 (MQ=255)
    cAACTGCCGCTTTGCGCGGATCAACCTGGTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTg                                                                                                                                                    <  6:703227/151‑1 (MQ=255)
    cAACTGCCGATTTGCGAGGATCAACCTGTTCTTCTGGTACGGCATTAGCCTGTTGCTGTTCGAGCTTTCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTg                                                                                                                                                    <  5:1929225/151‑1 (MQ=18)
         gCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGtt                                                                                                                                               <  1:1383683/151‑1 (MQ=255)
          ccGCGTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTc                                                                                                                                              <  8:153013/151‑1 (MQ=255)
            gCTTTGCGCGGATCAACCTGTTCTTCTGGTTCCGCATTAGCCAGTAGCTCTTCGCTCTTGAGAGCTTTGGATCGGGAAATAGCGGCTTCGACGTCTGCTTTGAGCGGATCGACCTGTTGTTCTGGGTCCGC‑AGT‑TGGGGGGTGCTGtgggg                                                                                                                                            >  7:1590869/1‑147 (MQ=0)
            gCTTTGCGCGGATCAACCTGGTCTTCTGGTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTccc                                                                                                                                            <  5:2091386/151‑1 (MQ=255)
                 gcgcGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGttt                                                                                                                                        <  4:397488/150‑1 (MQ=255)
                 gcgcGGATCAACCTGTTCTTCTGGTACCGCATCAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTg                                                                                                                                       <  8:375276/151‑1 (MQ=255)
                 gcgcGGATCAACCTGTCCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTg                                                                                                                                       <  4:643328/151‑1 (MQ=255)
                    ggtaTCAAGCTGTTCTTCTGCGACCGCATTAGCCTGTTGCTGTTCCAGGTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTgcgc                                                                                                                                    <  4:745747/148‑1 (MQ=18)
                    cgGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTgcgc                                                                                                                                    <  1:968171/151‑1 (MQ=255)
                     ggATCAACCTGGTCTTCTGGTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTgcgcg                                                                                                                                   <  3:777295/151‑1 (MQ=255)
                      gATGAACCTGTTCTTATTGTTCCGGTTTATCGTTTTGCTGTTCCAGCTTGATTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTgcgc                                                                                                                                    <  1:1936391/149‑1 (MQ=25)
                         cAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCtt                                                                                                                                <  3:943139/150‑1 (MQ=255)
                         cAACCTGTTCTTCTGGTACCGCAGTAGCCTGGTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCtt                                                                                                                                <  1:1072604/150‑1 (MQ=255)
                          aaCCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATATCCCAGTTGTACTCGATCGGC‑ATT‑AACCGCTTTGTGTTCCTGTTTGAGGGCtttt                                                                                                                              >  5:115447/1‑150 (MQ=14)
                               gTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCGGA‑ATA‑CGCCGGTTGGTGTGCCCGGTTGCGGGCTTTggggcg                                                                                                                         >  7:445073/1‑147 (MQ=17)
                                 tcttctGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTGTGCGCGCTTTGGCTCggg                                                                                                                       >  7:453546/1‑151 (MQ=255)
                                 tcttctGGTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTTGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCgg                                                                                                                        <  8:1984732/150‑1 (MQ=255)
                                    tctGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCggg                                                                                                                       <  1:2031452/148‑1 (MQ=255)
                                    tctGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCa                                                                                                                     <  2:688701/150‑1 (MQ=255)
                                       ggcaCCGCCGTAGCCTGTTGCTGTTCGCGCTTGCGTGCCTTGGCGCGTGCAATAGCCGCGGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAAt                                                                                                                   <  4:1723876/146‑1 (MQ=18)
                                       ggTACCTCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAg                                                                                                                 <  5:665761/151‑1 (MQ=255)
                                       ggTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAg                                                                                                                 <  1:920256/151‑1 (MQ=255)
                                          aCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCg                                                                                                               <  6:1472615/150‑1 (MQ=255)
                                            cGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCt                                                                                                            <  3:1293390/151‑1 (MQ=255)
                                             gCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCTGGTTTGCGCGGATCCAGCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAGTTGGGGCtg                                                                                                           >  3:1366507/1‑150 (MQ=17)
                                             gCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCtt                                                                                                           <  8:1580821/151‑1 (MQ=255)
                                              cATTAGCCTGGTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTc                                                                                                          <  1:1289359/151‑1 (MQ=255)
                                               aatAGCCTGGTGCTGGTCCAGCTTGCGGGCGTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                         <  1:1974824/149‑1 (MQ=25)
                                                  aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGCTCAACCTCTTCTTCTGGCTCCGC‑ATT‑AGGAAGATTATGTTACATCTTGCTGGGTTTGGCTAGGTCAATATAGGCTTCGAcg                                                                                                      >  2:436732/1‑151 (MQ=2)
                                                    ccTGTTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                    <  7:1927338/151‑1 (MQ=255)
                                                    ccTGCTGCTGTTCCAGCTTGCGGGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                    <  6:123651/151‑1 (MQ=255)
                                                       ggtccTGTACCAGCTTGCGCGCTTTGGCGCGTGCAATAGCCGCGGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcg                                                                                                   <  7:1047452/145‑1 (MQ=17)
                                                       ggtGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcg                                                                                                   <  5:1752028/147‑1 (MQ=255)
                                                       gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcgg                                                                                                  <  6:1851173/150‑1 (MQ=255)
                                                       gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcg                                                                                                   <  7:1768564/149‑1 (MQ=255)
                                                       gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcg                                                                                                   <  8:462186/149‑1 (MQ=255)
                                                          gcggctCCCGCTTGCGTGCTTTGGGCCGGGGACTAGCGGCGTCGCCGGGTGGCTTGCGCGGTTCAACCTGTGCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGGGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                              <  5:1234296/146‑1 (MQ=14)
                                                          gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGATCCGC‑ATA‑AGACGCTTGGTGATGCCGGTTGCGGTCTTTGGGACGGGCAATAGAGGGTTGGACGGAGGAttt                                                                                              >  3:259819/1‑151 (MQ=11)
                                                          gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                              <  4:312788/151‑1 (MQ=255)
                                                             gTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc                                                                                            <  5:624666/150‑1 (MQ=255)
                                                                 cAGTTTGCGTGCTTTCGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                                                                                       <  2:1882991/151‑1 (MQ=255)
                                                                  ggCTTGCGGGCGTGGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                      <  7:881106/150‑1 (MQ=255)
                                                                  ggCTTGAGGGCTTTGGCGCGTGCAATAGCCGCTGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                      <  6:1128018/150‑1 (MQ=255)
                                                                  cgCTTGCTGGCTTTCGCGCGGGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                      <  2:1677903/150‑1 (MQ=255)
                                                                  ccctcccctgcctgcgcgcGGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGGTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                      <  3:1527932/136‑1 (MQ=14)
                                                                   gCTTGCGTGCTTTTGCGCGTGCATTAGCCGCTGCGTCGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                     <  8:734014/151‑1 (MQ=255)
                                                                   gCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGGGTTGAGCGGAGACGGCTGTTCTGCTGGCTCATA‑ATT‑AGCGGGGTGCTGGGCCCGTTTGCGCGCTTTGGAACGGGCACTAGCGGCTTCGCcggcgggggggcgcggcgc                                                                                     >  1:815940/1‑138 (MQ=255)
                                                                     ttGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGGATTGGGCGGGGCCACGTGTTCTGGGGGGT‑CAC‑ATTGAGCCGGTTGGTGTTCCCGCTTGCGCGGTTTGGAAAGGGCAATTGGGGCTTGGGcgggggggggggggggggggg                                                                                   >  1:513007/1‑136 (MQ=255)
                                                                      tGCGTGCTTTGGCGCGGGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg                                                                                    <  2:1533941/149‑1 (MQ=255)
                                                                       tcgtgcgtgGGCGCGTGCAATAGCCGCTGCGACGGCAGCGTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc                                                                                  <  3:158569/149‑1 (MQ=255)
                                                                       gCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCTACCTGTTCTTCTGGCTCAGC‑ATT‑AGCCGGTTGCTGTTCCAGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGGTTGCGCGGagggcgg                                                                                 >  7:306789/1‑145 (MQ=14)
                                                                        cGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                <  3:1020670/151‑1 (MQ=255)
                                                                        cGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                >  8:115628/1‑151 (MQ=255)
                                                                        attGCTTTCTCGCTTTCAATAGCCGATTCTACTGCTGCTTTGCGCTGTTCTACTTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCGCGTTTTCGGGCTTTTGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGAcc                                                                                 <  4:1607387/148‑1 (MQ=14)
                                                                          ggcgtttgcgcGGGCAATAGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtg                                                                               <  6:1053085/143‑1 (MQ=14)
                                                                           gcgtgggCGCGGGCAATAGCCGCTGCCACTGCAGCTTTGCGCGTATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTTGTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCtgtt                                                                             <  8:512876/146‑1 (MQ=14)
                                                                              tttgcgcGTGCAATAGCCGCTGCTAAGCCATCTTTGCGGGGATCAAGCTGTTCTTCTGGCTCCGC‑TTT‑AGCCTGTTGCTGTTCGGGTTTTCTCGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCtgttgt                                                                           <  4:2014236/147‑1 (MQ=14)
                                                                               tagcgcGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTgttgtt                                                                          <  1:394762/148‑1 (MQ=255)
                                                                                  cgcgTGCAATAGCCGCTGCTACGGCAGCTTTGCGCTGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTgg                                                                      <  8:130518/151‑1 (MQ=255)
                                                                                    cgTGCAATAGCCGCTTCGACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCt                                                                    <  3:433240/151‑1 (MQ=255)
                                                                                    cgTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCt                                                                    <  1:703012/151‑1 (MQ=255)
                                                                                       gCAATCGCAGCTGCCACTGCAGATGTGCGCGGATCAACCTGGTCTTCTGCCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCGTTGGCGCGGGCAATAGCGGCGGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg                                                                 <  4:1094660/151‑1 (MQ=14)
                                                                                       gCAAGAGCCGCCTCGACGGCAGCTTTGCGATTCTGACTCTCTTCTAGTGG‑TGCGCGATT‑ACGCTCTTGCTGTTCCAGCTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTcc                                                                  <  5:414341/150‑2 (MQ=2)
                                                                                       ccAAGAGCCGCTTCTAGTTCTGCTTTGCGCGGATCCACCTGTTCTTCTGGAACGTG‑AGT‑CGAGTGGTGCTGTTCGAGCTTGCGTGCTTTCGCTCGGGCAATAGCGGCTTCCACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTccg                                                                 <  5:1599453/150‑3 (MQ=2)
                                                                                         aaTAGCCGCTTCTACTGCAGCTTTGCGCGGATGAAGCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCGCGTTTGCGCGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCa                                                               <  4:1341208/151‑1 (MQ=17)
                                                                                          aTAGCCGCTGCGACTGCCGCTTTGCGCGGATGAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCGGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAt                                                              <  2:119037/151‑1 (MQ=14)
                                                                                           tAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTGTTCTGGTTACGG‑ATT‑AGCAGGTTGCTGTTGCAGTATCCTCGCTTTGGCACGGGCAATAGGGCCTTCGCCGGCGGCTTTGCGCGGATGGCGCTGTTGTTCTGGGTCgggcgg                                                             >  1:467814/1‑147 (MQ=2)
                                                                                            aGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAtt                                                             <  1:1852095/150‑1 (MQ=255)
                                                                                                 gggctactgccgCTTTTGGCGGAGTAACCTGTTCTTCTGGCTCCTC‑TTT‑AGCCTGGTGCTGTTCGCGTTTGCGGGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCt                                                        <  6:1708697/139‑1 (MQ=14)
                                                                                                    gtacgtctgCTTTGCTCTTATCTACATGTTCTTATTGCTCGGT‑TTT‑AGCCTGTTGCTGTTCGCGTTTGTTGGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg                                                    <  4:485829/143‑1 (MQ=14)
                                                                                                    caactgCAGCTTTGCGCGGAGCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGtt                                                     <  5:507670/145‑1 (MQ=255)
                                                                                                      acttcAGCTTTGCGCGGATCAACCTGTTCTTCTGGTTCCGC‑ATT‑ATCCGGTTGATGTTCCTGTTTGCTTGTTTTCGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCt                                                  <  4:981579/147‑1 (MQ=14)
                                                                                                      actgCAGCGTTGCGCGGATCAACCTGTTCTTCTGGCTCGGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCt                                                  <  2:616924/148‑1 (MQ=255)
                                                                                                           ggCTTTGCGCTTAGCCACCTGGTCTTCTGGCTCCGC‑ATG‑AGCCTGGTGCTGTGCGGGTTTGTGCGCTTTGGCGCGGGCAATAGCGGCGGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTcc                                             <  6:393474/150‑1 (MQ=11)
                                                                                                            gCTTTGCGCGGATCAACCTCTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGGTCCAGTTTGCGCGCTTTTGCGCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                            <  3:1958303/151‑1 (MQ=14)
                                                                                                               tttcgagtaTCTACCTGGTCTTCTGGCTCCGG‑ATT‑AGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAg                                           <  3:57674/141‑1 (MQ=14)
                                                                                                               ttGCTCTGATTAACCTTTTCTTCTGGGACCTC‑TTT‑ATCCTGTTGCTGTTCGCGTTTTTGGGCTTGTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCTGCATTAGCCTGTTGCTGTTCCa                                            <  8:1425613/148‑1 (MQ=2)
                                                                                                                 tgggtttggtacttGTTCTTCTTGCTCGTC‑ATT‑ATCCTTTTGCTGTTCGGGTTTTCTGGCTTTTGCTCGGGCAATAGCCGCTGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt                                        <  2:782031/137‑1 (MQ=9)
                                                                                                                 gcgcGGATCACCCTGTTCTTCTTGCTCCGC‑TTT‑AGCCTGGTGCTGTTCCCGTTTTCTCGCTTTGGCTCGGGCAATAGCCGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt                                        <  1:1570804/150‑1 (MQ=14)
                                                                                                                  gtcgGATCATTCTGTTCTTCTGGCTCTGC‑ATT‑AGTCTGTTGCTGGTCGGGTTTGGGGGCGTTGGCGCGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGc                                      <  8:297053/149‑1 (MQ=14)
                                                                                                                       attcaacTGTTCTTATTGCTCCGT‑ATT‑ATCCTTTTGCTGTTCGCGTTTTCTGGCTTTTGCGCGTGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGGTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc                                  <  2:1812753/144‑1 (MQ=9)
                                                                                                                           aacTGGTCTTCTGGCTCGGC‑TTT‑AGCCTTGTGCTGTTCGGGTTTGTTGGCTTGCGCGCGGGCAATAGCGGCGGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTg                              <  6:1398604/148‑1 (MQ=2)
                                                                                                                            ccTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTCCGAGGATCGACCAGTTGTTCTGGCTCGGCATTATCCTGTTGATCTTCCAGCTTGCGAGCTTAGGc                            >  8:459399/1‑151 (MQ=14)
                                                                                                                            ccTGTTCTTCTGGATCCGA‑ATT‑ATCCTGTTGCTGTTCCAGCTTGAGCGCTTTGGCTCGTGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGc                            <  2:1384586/151‑1 (MQ=11)
                                                                                                                                         cTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCAACGGCGGCTTTGCCCCCCTCGTCCTGTGCTTCACCATCCGCATTAGCCTGTTGCGGTTCCAGCTTGCTAGATTTGGcggggggggtgggg               >  5:1683745/1‑138 (MQ=255)
                                                                                                                                           ccGC‑ATT‑AGCCGGCTGCTGTGCCCGGTTGCGCGCCTGGGCGCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGc             <  7:1638155/151‑1 (MQ=14)
                                                                                                                                            cGC‑ATT‑AGCCTGGTGCTGTTCCCGTTTGCGGGCGTGGGCGCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt            <  7:1169870/151‑1 (MQ=14)
                                                                                                                                            cGC‑ATC‑AGCCTGGTGCTGGGCCCGTTTGCGCGCGTGCGCGCGGGCAATAGCCGCTGCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt            <  1:1135113/151‑1 (MQ=14)
                                                                                                                                                aTT‑AGCCTGTTGCTGTTCGGGTTTTATGGCTTTTGCGCGGGCAATAGCCGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc          <  8:866643/150‑1 (MQ=14)
                                                                                                                                                    acccGGGTGCTGGGCGCGTTTGCGCGCGTGCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg      <  7:1096263/149‑1 (MQ=14)
                                                                                                                                                    aGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAGAACCGGATACGACGGCGGGTTTCGGCGGAAAGAGATGTAGTTCTGGGTAGGCCTTAGCCTGTTGCTGTTAAAGCTTGCGGGCTTTGGCGCGGGCagggggggcgtggccg      >  7:628744/1‑136 (MQ=255)
                                                                                                                                                     gCCGGGTGCTGTTCCCGTTTGCGCGCGTTCGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcgg     <  7:56986/151‑1 (MQ=255)
                                                                                                                                                        |                                                                                                                                                      
GCGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGG  >  DH1/2169398‑2169698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑