| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 2,169,568 | 0 | C | G | 23.2% | 499.4 / 28.1 | 254 | A664A (GCG→GCC) | rsxC | electron transporter RsxC |
| Reads supporting (aligned to +/- strand): ref base C (33/149); new base G (4/51); total (43/211) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.73e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 260 total aligned reads displayed.
CGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC > DH1/2169418‑2169715 | ggtaTCAAGCTGTTCTTCTGCGACCGCATTAGCCTGTTGCTGTTCCAGGTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTgcgc < 4:745747/148‑1 (MQ=18) ggATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTgcgcg < 5:1828369/151‑1 (MQ=255) ggATCAACCTGGTCTTCTGGTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTgcgcg < 3:777295/151‑1 (MQ=255) agctaCCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCt < 1:1882805/147‑1 (MQ=255) cAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCtt < 3:943139/150‑1 (MQ=255) cAACCTGTTCTTCTGGTACCGCAGTAGCCTGGTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCtt < 1:1072604/150‑1 (MQ=255) tctGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCa < 2:688701/150‑1 (MQ=255) gggaCCGCATTAGCCTTTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATa < 1:196566/147‑1 (MQ=255) ggctccGCTTTAGCCTGTTGCTGGTCGTGCTTTCTGGCGTTCGCGCGGGCAATAGCCGCGTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAg < 4:1780512/147‑1 (MQ=18) ggTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCaa < 8:653680/148‑1 (MQ=255) ggTACCTCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAg < 5:665761/151‑1 (MQ=255) gttcgtcATTATCCTGCTGCTGTTCGTGCTTTCGTGCTTTTGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGc < 2:1336939/145‑1 (MQ=21) gTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGCATCAACCTCTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCAGTTTGCGCGCTTTGGCTCGGGCAATAGc > 7:461434/1‑151 (MQ=255) gacggCATTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCg < 7:448346/147‑1 (MQ=255) cGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCt < 3:1293390/151‑1 (MQ=255) cATTAGCCTTTTGCTGTTCGTGCTTGCTTGCTTTTGCGCGTGCAATAGCCGCTTCGACAGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCtt < 2:242350/150‑1 (MQ=25) cATTAGCCTGGTGCTGGTCCAGCTTGCGTGCTTTCGCGCGTGCAATAGCCGCTGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTc < 8:1542076/151‑1 (MQ=255) ttAGCCTGTTGCTGTTCGTGCTTGCGTTCTTTGGCGCGTGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTc < 2:114430/149‑1 (MQ=21) aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGCTCAACCTCTTCTTCTGGCTCCGC‑ATT‑AGGAAGATTATGTTACATCTTGCTGGGTTTGGCTAGGTCAATATAGGCTTCGAcg > 2:436732/1‑151 (MQ=2) ccTGTTGCTGGTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc < 3:1683838/151‑1 (MQ=255) ccTGTTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc < 7:1927338/151‑1 (MQ=255) ccTGCTGCTGTTCCAGCTTGCGGGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc < 6:123651/151‑1 (MQ=255) tGCTGTGCGTGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCt < 8:1922016/150‑1 (MQ=255) gcggctCCCGCTTGCGTGCTTTGGGCCGGGGACTAGCGGCGTCGCCGGGTGGCTTGCGCGGTTCAACCTGTGCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGGGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt < 5:1234296/146‑1 (MQ=14) gCTGTTCCTGCTTGCGGGCTTTCGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCtt < 4:25857/150‑1 (MQ=255) cTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTGTTCTGGATCCGC‑ATT‑AGATGGGAGGAGTTCACGTGTGAGCTCGATTGCCCTGCCGAAAGCGGGTTCGACGTCGGCTTTg > 1:635563/1‑151 (MQ=2) gTTCCAGCTTTCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc < 5:426564/150‑1 (MQ=255) gTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc < 5:624666/150‑1 (MQ=255) tCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGAGCTTTGGCTCGGGCAATAGCGGCTTGGACGGCGGCtgggcggg > 8:1476535/1‑144 (MQ=255) ggCTTGCGGGCGTGGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt < 7:881106/150‑1 (MQ=255) ggCTTGAGGGCTTTGGCGCGTGCAATAGCCGCTGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt < 6:1128018/150‑1 (MQ=255) cgCTTGCTGGCTTTCGCGCGGGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt < 2:1677903/150‑1 (MQ=255) cgCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt < 3:290093/150‑1 (MQ=255) gttcccctcgcttcgcgcGGGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGC‑ATT‑AGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATc < 4:453146/137‑1 (MQ=11) gcttgcttgcttTTGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa < 6:1435184/149‑1 (MQ=255) gCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGGGTTGAGCGGAGACGGCTGTTCTGCTGGCTCATA‑ATT‑AGCGGGGTGCTGGGCCCGTTTGCGCGCTTTGGAACGGGCACTAGCGGCTTCGCcggcgggggggcgcggcgc > 1:815940/1‑138 (MQ=255) ttGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGGATTGGGCGGGGCCACGTGTTCTGGGGGGT‑CAC‑ATTGAGCCGGTTGGTGTTCCCGCTTGCGCGGTTTGGAAAGGGCAATTGGGGCTTGGGcgggggggggggggggggggg > 1:513007/1‑136 (MQ=255) tGCGTGCTTTGGCGCGGGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg < 2:1533941/149‑1 (MQ=255) cGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt > 8:115628/1‑151 (MQ=255) ggcgtttgcgcGGGCAATAGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtg < 6:1053085/143‑1 (MQ=14) ggcgttGGCGCGTGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAcc < 5:1745644/144‑1 (MQ=17) gcgtgggCGCGGGCAATAGCCGCTGCCACTGCAGCTTTGCGCGTATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTTGTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCtgtt < 8:512876/146‑1 (MQ=14) ccgctcgcccgcgccaTAGCCGCTTCGACGGCTTTTTTTTTATGTTCAAGCTGTTCTGCTTGATCTCC‑ATT‑AGGCTTTTGCTGTTTTCGCTTGAGGTCGCTGTTACGTGCTATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCtgtt < 6:1613449/136‑1 (MQ=2) cTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCAGATTGCGAGCTTTGGCTCGGGCAATAGAGCCTTCAACGGCGGCTTTGAGCGGATCGAGCtgatg > 8:333886/1‑151 (MQ=14) cTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACATGTTCTTATGGCTCAGC‑ATT‑AGACTGTTGCTGTTCCAGGTTGCGCGCTTATGATAGGGAAATAGCTGCTTCTACGGCAGGATTGCGAggggggcggggagg > 8:536767/1‑139 (MQ=255) tgcgcGTGCAATAGCCGCTGCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTTTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTc < 6:447966/149‑1 (MQ=255) ggcgTGCAATAGCCGCTGCGACGTGAGCTTTGCGCGTATCAACCTGTTGTTCTGGCTCGTG‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCTGGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTgg < 1:962045/150‑1 (MQ=14) cgcgGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTgg < 3:1999086/151‑1 (MQ=255) gCAATCGCAGCTGCCACTGCAGATGTGCGCGGATCAACCTGGTCTTCTGCCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCGTTGGCGCGGGCAATAGCGGCGGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg < 4:1094660/151‑1 (MQ=14) gCAAGAGCCGCCTCGACGGCAGCTTTGCGATTCTGACTCTCTTCTAGTGG‑TGCGCGATT‑ACGCTCTTGCTGTTCCAGCTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTcc < 5:414341/150‑2 (MQ=2) aaTAGCCGCTTCTACTGCAGCTTTGCGCGGATGAAGCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCGCGTTTGCGCGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCa < 4:1341208/151‑1 (MQ=17) tAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTGTTCTGGTTACGG‑ATT‑AGCAGGTTGCTGTTGCAGTATCCTCGCTTTGGCACGGGCAATAGGGCCTTCGCCGGCGGCTTTGCGCGGATGGCGCTGTTGTTCTGGGTCgggcgg > 1:467814/1‑147 (MQ=2) aGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAtt < 1:1852095/150‑1 (MQ=255) aGCCGCTGCAACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa < 3:14698/151‑1 (MQ=255) ccGCGTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGc < 3:436429/151‑1 (MQ=255) cggctaCGGCAGCTTTGCGCGGAGCAACCTGTTCTTCTGGGTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTg < 1:1983553/146‑1 (MQ=17) ttCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTTCCTCAGC‑AAT‑ACCCGGTTGCTGTTACAGTTTGCGAGATTTGGCAAGGGCAATAGCGGCTTCGACGGAAGAATTGAGCGGATCGACCTGTTGTTCAGCGTCGGcgggtgcgggt > 2:1388679/1‑141 (MQ=2) caactgCAGCTTTGCGCGGAGCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGtt < 5:507670/145‑1 (MQ=255) actggaGCTTTGCGCTGAGCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCTGGTGCTGGTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg < 4:1640988/144‑1 (MQ=14) actgCAGCTTTGCGCGGATCAACCTGGTCTTCTGGCTCCGC‑ATT‑AGCCTGGTGCTGTTCCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCt < 5:1030146/148‑1 (MQ=14) actgCAGCGTTGCGCGGATCAACCTGTTCTTCTGGCTCGGC‑ATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCt < 2:616924/148‑1 (MQ=255) tttcgcgGAGCAACCTGTTCTTCTGGCTCCGC‑ATG‑AGCCGGCTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGc < 1:404295/147‑1 (MQ=255) tttcgagtaTCTACCTGGTCTTCTGGCTCCGG‑ATT‑AGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAg < 3:57674/141‑1 (MQ=14) tgggtttggtacttGTTCTTCTTGCTCGTC‑ATT‑ATCCTTTTGCTGTTCGGGTTTTCTGGCTTTTGCTCGGGCAATAGCCGCTGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt < 2:782031/137‑1 (MQ=9) gggcgTATCAACCTGTTCTTCTGGCTCGTC‑ATC‑AGCCTGGTGCTGTTCGGGTTTTTTGGCTTTTGCGCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt < 7:594598/148‑1 (MQ=14) gcgcGGATCACCCTGTTCTTCTTGCTCCGC‑TTT‑AGCCTGGTGCTGTTCCCGTTTTCTCGCTTTGGCTCGGGCAATAGCCGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt < 1:1570804/150‑1 (MQ=14) gtcgGATCATTCTGTTCTTCTGGCTCTGC‑ATT‑AGTCTGTTGCTGGTCGGGTTTGGGGGCGTTGGCGCGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGc < 8:297053/149‑1 (MQ=14) ggggaggtaCCTGTTCTTCGGGCTCGTC‑TTT‑AGCCGTGTGCTGGGCGCGTTTGCGGGCGTGTGCGCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCg < 4:1581043/143‑1 (MQ=9) cgattgtcaCCTGCACTTCTGCCTCCGG‑TTT‑ACCCTTGTGCTGGTCGCGTTTGGGGGCCTGCGCGCGGGCAATAGCCGCTGCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCg < 3:1087119/143‑1 (MQ=2) cgGAGCAACCTGGTCTTCTGGCTCCGC‑ATT‑AGCCTGGTGCTGTTCCCGTTTGCGGGCGTTGGCGCGGGCAATAGCGGCTGCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGt < 3:1546480/151‑1 (MQ=14) attcaacTGTTCTTATTGCTCCGT‑ATT‑ATCCTTTTGCTGTTCGCGTTTTCTGGCTTTTGCGCGTGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGGTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc < 2:1812753/144‑1 (MQ=9) gctaCCTGGTCTTCTGGCTCGGC‑ATT‑ACCCGTCTGCTGTGCGGGTTTGCTCGCCTGCGCGCGGGCAATAGCGGCGTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCtt < 8:1406522/148‑1 (MQ=14) cAACCTGTTCTTCTGGCTCCGC‑ATC‑AGCCTGTTGCTGTTCGCGTTTGAGCGCGTTCGCTCGGGCAATAGCGGCTGCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCttt < 5:11616/151‑1 (MQ=14) ccTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTCCGAGGATCGACCAGTTGTTCTGGCTCGGCATTATCCTGTTGATCTTCCAGCTTGCGAGCTTAGGc > 8:459399/1‑151 (MQ=14) ggCGCCGC‑ATT‑AGCCGGGTGCTGTTCGCGTGTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAg < 7:333767/151‑1 (MQ=255) tcctcgggttt‑AGCCTTTTGCTGTGCCGGTTTGTTGGCCTTTGCGCGGGCAATAGCGGCTTCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa < 4:371047/141‑1 (MQ=11) tacGC‑ATG‑AGCAGGTGGCGGTTCCAGATTGCGGGCTGTGCCTGGCGCTATAGCGGCTTCGCCTGCGTCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg < 1:1461487/148‑1 (MQ=14) gtcctctat‑AGCCTTTTGCTGTTCGCGTTTTTTGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCTGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg < 6:1848124/143‑1 (MQ=14) ccGC‑ATT‑AGCCGGCTGCTGTGCCCGGTTGCGCGCCTGGGCGCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGc < 7:1638155/151‑1 (MQ=14) cGC‑ATC‑AGCCTGGTGCTGGGCCCGTTTGCGCGCGTGCGCGCGGGCAATAGCCGCTGCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt < 1:1135113/151‑1 (MQ=14) gC‑ATG‑ATCCGGGTGCTGTTCCCGGTTTCGGGCGTTGGCGCGGGCAATAGCCGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt < 7:1230921/151‑1 (MQ=14) cccagtcgccggccgCTGTGCCCGGTTGCGCGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt < 7:1476604/144‑1 (MQ=14) c‑ATT‑AGCCTTTTGCTGGTCGGGTTTTTGGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc < 8:764358/151‑1 (MQ=14) c‑ATT‑AGCCTGTTGCTGTTCGCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc < 4:676491/151‑1 (MQ=255) gccatcgcggggtGCTGTTCCCTCTTGTTCGCTTGTGCGCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt < 8:1301079/139‑1 (MQ=14) aTT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGATCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGAGGCTTCg > 8:468987/1‑151 (MQ=255) gagccttgtGCTGGTCCGGTTTGCGGGCGTGGGCGCGGGCAATAGCGGCGGCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGa < 5:1623615/142‑1 (MQ=14) caGCCGGGTGCTGTTCCGGTCTGGTCGCGTGGGCGCGGGCAATAGCGGCGTCGACGGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc < 1:1322950/150‑1 (MQ=14) acccGGGTGCTGGGCGCGTTTGCGCGCGTGCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg < 7:1096263/149‑1 (MQ=14) aGCCTGTTGCTGTTCGCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc < 8:1027481/150‑1 (MQ=14) aGCCTGCTGCTGTTCGGGTTTGCTGGCGTGGGCGCGGGCAATAGCGGCGGCGACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg < 7:1734653/151‑1 (MQ=14) aGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCCATAGCTGCTTca > 7:1062360/1‑51 (MQ=255) aGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAGAACCGGATACGACGGCGGGTTTCGGCGGAAAGAGATGTAGTTCTGGGTAGGCCTTAGCCTGTTGCTGTTAAAGCTTGCGGGCTTTGGCGCGGGCagggggggcgtggccg > 7:628744/1‑136 (MQ=255) aGCCGGATGCTGGTCGCGTTTGCGGGCGTGCGCGCGGGCAATAGCCGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg < 5:1969655/151‑1 (MQ=14) gtGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCt < 3:1366389/150‑1 (MQ=255) gctgggcgggTTTGCGGGCGTGGGCGCGGGCAATAGCCGCTTCCACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt < 5:1475124/142‑1 (MQ=14) gCTGTTCGTGTTTTCTGGCTTGAGCTCGGGCAATAGCGGCTTCTACTGCTGCTTTGCGCGGATCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGATTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt < 6:283212/151‑1 (MQ=11) cggctCCCGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTg < 7:115781/147‑1 (MQ=255) cgttGCGCGCCTGCGCTCGGGCAATAGCGGCGTCGACGGCCGCGTTGCGCGGATCCACCTGTTGTTCTGGCTCCGCATTAGCCTGCTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 1:244172/149‑1 (MQ=14) cgtGCGCGCTTTGGCTCGTTCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGGTCTTCTGGCTCGTCTTTAGCGTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg < 7:251115/149‑1 (MQ=14) | CGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGC‑ATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC > DH1/2169418‑2169715 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |