Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5770TG29.5% 263.7 / 65.6 253R661R (CGA→CGC) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base T (29/141);  new base G (2/69);  total (41/212)
Fisher's exact test for biased strand distribution p-value = 1.44e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 255 total aligned reads displayed.

GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCT  >  DH1/2169429‑2169724
                                                                                                                                                     |                                                                                                                                                    
gTTCTTCTGGGACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCg                                                                                                                                                    <  1:154892/151‑1 (MQ=255)
  tcttctTGTTCCGGATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTTGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCgg                                                                                                                                                   <  2:916505/150‑1 (MQ=255)
  tcttctGGTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTTGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCgg                                                                                                                                                   <  8:1984732/150‑1 (MQ=255)
     tcggctACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGc                                                                                                                                                 <  5:287381/144‑1 (MQ=255)
        gggaCCGCATTAGCCTTTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATa                                                                                                                                             <  1:196566/147‑1 (MQ=255)
        ggcaCCGCCGTAGCCTGTTGCTGTTCGCGCTTGCGTGCCTTGGCGCGTGCAATAGCCGCGGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAAt                                                                                                                                              <  4:1723876/146‑1 (MQ=18)
        ggTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCaa                                                                                                                                               <  8:653680/148‑1 (MQ=255)
        ggTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAg                                                                                                                                            <  1:920256/151‑1 (MQ=255)
         gttcgtcATTATCCTGCTGCTGTTCGTGCTTTCGTGCTTTTGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGc                                                                                                                                           <  2:1336939/145‑1 (MQ=21)
          gacggCATTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCg                                                                                                                                          <  7:448346/147‑1 (MQ=255)
            ccGCATTACCCTGTTGCTGTTCCCGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGc                                                                                                                                        <  3:1438889/151‑1 (MQ=255)
             cGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCt                                                                                                                                       <  3:1293390/151‑1 (MQ=255)
              gCATTAGCCTGTTGCTGGTCCTGCTTTCTTGCTTTTGCGCGTGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCtt                                                                                                                                      <  2:582716/151‑1 (MQ=21)
                 ttttccTGTTGCTGTTGCTGGTTGGTTGCTTTGGCGCGGGCAATAGCCGCTTGTACGGCAGGTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                                    <  4:1269295/146‑1 (MQ=21)
                   atccTGTTGCTGTTCCCGCTTTCGTGCTTTTGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcg                                                                                                                                 <  2:303990/149‑1 (MQ=255)
                   aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                                  <  1:1117492/150‑1 (MQ=255)
                     ccTGTTGCTGGTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                               <  3:1683838/151‑1 (MQ=255)
                     ccTGTTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                               <  7:1927338/151‑1 (MQ=255)
                     ccTGCTGCTGTTCCAGCTTGCGGGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                               <  6:123651/151‑1 (MQ=255)
                        ggtccTGTACCAGCTTGCGCGCTTTGGCGCGTGCAATAGCCGCGGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcg                                                                                                                              <  7:1047452/145‑1 (MQ=17)
                        ggtGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcg                                                                                                                              <  5:1752028/147‑1 (MQ=255)
                        gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcg                                                                                                                              <  8:462186/149‑1 (MQ=255)
                           gCTGTTCCTGCTTGCGGGCTTTCGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCtt                                                                                                                          <  4:25857/150‑1 (MQ=255)
                           gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGATCCGCATA‑AGACGCTTGGTGATGCCGGTTGCGGTCTTTGGGACGGGCAATAGAGGGTTGGACGGAGGAttt                                                                                                                         >  3:259819/1‑151 (MQ=11)
                            cTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTGTTCTGGATCCGCATT‑AGATGGGAGGAGTTCACGTGTGAGCTCGATTGCCCTGCCGAAAGCGGGTTCGACGTCGGCTTTg                                                                                                                        >  1:635563/1‑151 (MQ=2)
                              gTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGCCGGCGCCTTTTCGAGGATAAAACTGTTATTCTTGATCCGCATT‑AGCCTGTTGCTGTTAAAGTTTGCGAGCTTTGGCTCGGGCAATAGCGGGTTcggcggcgggtggggg                                                                                                                      >  2:649279/1‑144 (MQ=2)
                                tCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGAGCTTTGGCTCGGGCAATAGCGGCTTGGACGGCGGCtgggcggg                                                                                                                    >  8:1476535/1‑144 (MQ=255)
                                 cgaGCTTGGTTGCTTTGGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCgg                                                                                                                   <  3:730768/149‑1 (MQ=17)
                                 ccAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACATCTTAATCTCGAACGGAATT‑AGAAGATTGATATTCAATTTTTAGATCTATGGCTAGGGCAATAGAGTATTAAAAGGCGGCTTTGCGCgg                                                                                                                   >  8:251257/1‑151 (MQ=255)
                                  cAGTTTGCGTGCTTTCGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                                                                                                                  <  2:1882991/151‑1 (MQ=255)
                                   ggCTTGAGGGCTTTGGCGCGTGCAATAGCCGCTGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                 <  6:1128018/150‑1 (MQ=255)
                                   aGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTATTATGGCTCCTCATA‑AGACCGTTCATGTTCCCAAATGCGCGATTTCGAAAGGTCAATAGAAGCAACGACGGCGGCTTTGCGCGGAt                                                                                                                 >  5:644215/1‑151 (MQ=255)
                                    gttcccctcgcttcgcgcGGGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATT‑AGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATc                                                                                                                <  4:453146/137‑1 (MQ=11)
                                    gCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGGGTTGAGCGGAGACGGCTGTTCTGCTGGCTCATAATT‑AGCGGGGTGCTGGGCCCGTTTGCGCGCTTTGGAACGGGCACTAGCGGCTTCGCcggcgggggggcgcggcgc                                                                                                                >  1:815940/1‑138 (MQ=255)
                                    gCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCACCCTGGTCTTCTGGATCCGCATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCAAGGGCAATAGCGGCTTCGCCGGCGGCGTTGGGCGGagg                                                                                                                >  1:1362191/1‑149 (MQ=11)
                                    ccTTGCGGGCGGTGGCGCGGGCAATAGCCGCTGCCACGGCAGCTGTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                                <  5:1399547/150‑1 (MQ=17)
                                      ttGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGGATTGGGCGGGGCCACGTGTTCTGGGGGGT‑CACATTGAGCCGGTTGGTGTTCCCGCTTGCGCGGTTTGGAAAGGGCAATTGGGGCTTGGGcgggggggggggggggggggg                                                                                                              >  1:513007/1‑136 (MQ=255)
                                       tGCGTGCTTTGGCGCGGGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg                                                                                                               <  2:1533941/149‑1 (MQ=255)
                                         cGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                                           >  8:115628/1‑151 (MQ=255)
                                         attGCTTTCTCGCTTTCAATAGCCGATTCTACTGCTGCTTTGCGCTGTTCTACTTGTTCTTCTGGCTCCGCATT‑AGCCTGTTGCTGTTCGCGTTTTCGGGCTTTTGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGAcc                                                                                                            <  4:1607387/148‑1 (MQ=14)
                                           ggcgtttgcgcGGGCAATAGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtg                                                                                                          <  6:1053085/143‑1 (MQ=14)
                                           ggcgtgtgcgatttcAATAGCCGCGGCCACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgt                                                                                                         <  4:1076889/137‑1 (MQ=14)
                                            ccgctcgcccgcgccaTAGCCGCTTCGACGGCTTTTTTTTTATGTTCAAGCTGTTCTGCTTGATCTCCATT‑AGGCTTTTGCTGTTTTCGCTTGAGGTCGCTGTTACGTGCTATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCtgtt                                                                                                        <  6:1613449/136‑1 (MQ=2)
                                             cTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCTGTTGCTGTTCCAGATTGCGAGCTTTGGCTCGGGCAATAGAGCCTTCAACGGCGGCTTTGAGCGGATCGAGCtgatg                                                                                                       >  8:333886/1‑151 (MQ=14)
                                             cTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACATGTTCTTATGGCTCAGCATT‑AGACTGTTGCTGTTCCAGGTTGCGCGCTTATGATAGGGAAATAGCTGCTTCTACGGCAGGATTGCGAggggggcggggagg                                                                                                       >  8:536767/1‑139 (MQ=255)
                                                tagcgcGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTgttgtt                                                                                                     <  1:394762/148‑1 (MQ=255)
                                                 ggcccctccAATAGCCGCGGCCACTGCAGCTTTGCTATGATCACCCTGTTCTTCTGGGTCCGCATT‑AGCCTGTTGCTGTTCCCGTTTTCGAGCGTTGGCGGTGGTAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                   <  8:1230611/143‑1 (MQ=9)
                                                 cccacccccacgaGCCGCACCGCCGGCTGCCTTGCGCGGAGCCACCTCGTCAACACGAGCCGCATT‑ACCCTGAGGCGGGTCCAGACTGCGCGCCTTGGGAGCTGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                   <  1:1629250/139‑1 (MQ=2)
                                                   cgcgGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTgg                                                                                                 <  7:929647/151‑1 (MQ=255)
                                                   cgcgGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTgg                                                                                                 <  3:1999086/151‑1 (MQ=255)
                                                      gTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGATTGCGCGCTTTGGCTCGGTAAATAGAGGATTAGACGGAGGCTTTGATCGGATCGACCTGTTGTTCTGGA‑Tc                                                                                             >  4:685260/1‑151 (MQ=14)
                                                       gtcAATAGCCGCTTGGACGGCATCTTTTCGCCGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCTGTTGCTGTTCCCGTTTTCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCg                                                                                            <  7:617108/149‑1 (MQ=14)
                                                       ggCAATAGCCGCTTCTACTGCAGCTTTTCGCTTATCCACCTGTTCTTCTGGCTCCGCATT‑AGCCTGTTGCTGTTCCCGTTTGCTCGCTTTTGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCg                                                                                            <  2:1803707/150‑1 (MQ=14)
                                                           aTAGCCGCTGCGACTGCCGCTTTGCGCGGATGAACCTGTTCTTCTGGCTCCGCATT‑AGCCTGTTGCTGTTCCGGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCAt                                                                                        <  2:119037/151‑1 (MQ=14)
                                                           aTAGCCGCGGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCAt                                                                                        <  7:478235/151‑1 (MQ=255)
                                                            tAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTGTTCTGGTTACGGATT‑AGCAGGTTGCTGTTGCAGTATCCTCGCTTTGGCACGGGCAATAGGGCCTTCGCCGGCGGCTTTGCGCGGATGGCGCTGTTGTTCTGGG‑TCgggcgg                                                                                       >  1:467814/1‑147 (MQ=2)
                                                             aGCCTCGTCGACGGCAGCTGTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATC‑AGCCTGGTGCTGTTCCCGTTTGCTCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTa                                                                                      <  7:689562/151‑1 (MQ=14)
                                                             aGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCAtt                                                                                       <  1:1852095/150‑1 (MQ=255)
                                                                  cggctaCGGCAGCTTTGCGCGGAGCAACCTGTTCTTCTGGGTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTg                                                                                 <  1:1983553/146‑1 (MQ=17)
                                                                    tctactgcctcTTTGCTCGGATGAAGCTGTTCTTCTGTCTCCGCATT‑AGCCTGTTGCTGTTCCGGTTTGCGGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCt                                                                                  <  6:1829291/138‑1 (MQ=14)
                                                                       actgCAGCTTTTCGCTGATCCACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTg                                                                              <  4:641518/146‑1 (MQ=255)
                                                                       actgCAGCTTTGCGCGGATCAACCTGGTCTTCTGGCTCCGCATT‑AGCCTGGTGCTGTTCCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCt                                                                            <  5:1030146/148‑1 (MQ=14)
                                                                            ggCTTTGCGCTTAGCCACCTGGTCTTCTGGCTCCGCATG‑AGCCTGGTGCTGTGCGGGTTTGTGCGCTTTGGCGCGGGCAATAGCGGCGGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTcc                                                                       <  6:393474/150‑1 (MQ=11)
                                                                             gCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCAGCTTTCCGAGGATCCACCACTTGTTCTGCG‑TCCGAATTAGCCTgaagatcttcc                                                                       >  8:449186/1‑140 (MQ=14)
                                                                                ttGCGCTGATCTACGAGTTCTTATGGCTCGGCATT‑ATCCTGTTGCTGTTCGGGTTTGTGGGCTTTGGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAg                                                                     <  8:1537430/149‑1 (MQ=11)
                                                                                 ttatattatcatacTGTTCTTATGGATCCGAATT‑ATCCTGTTTCTGTTCTTGCTTTCGAGGTTTGGCTTGGGATATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCt                                                                   <  8:490473/137‑1 (MQ=2)
                                                                                     cgGAGCAACCTGGTCTTCTGGCTCCGCATT‑AGCCTGGTGCTGTTCCCGTTTGCGGGCGTTGGCGCGGGCAATAGCGGCTGCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGt                                                              <  3:1546480/151‑1 (MQ=14)
                                                                                      ggATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACATGTTGTTCTGGG‑TCGGCATTAGCCTGTTGCTGTTGCGGCGTGCggg                                                             >  3:322290/1‑149 (MQ=14)
                                                                                         gctaCCTGGTCTTCTGGCTCGGCATT‑ACCCGTCTGCTGTGCGGGTTTGCTCGCCTGCGCGCGGGCAATAGCGGCGTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCtt                                                          <  8:1406522/148‑1 (MQ=14)
                                                                                          cAACCTGTTCTTCTGGCTCCGCATC‑AGCCTGTTGCTGTTCGCGTTTGAGCGCGTTCGCTCGGGCAATAGCGGCTGCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCttt                                                         <  5:11616/151‑1 (MQ=14)
                                                                                            aacTGGTCTTCTGGCTCGGCTTT‑AGCCTTGTGCTGTTCGGGTTTGTTGGCTTGCGCGCGGGCAATAGCGGCGGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTg                                                        <  6:1398604/148‑1 (MQ=2)
                                                                                                      cgggCTCCGCATG‑AGCCTTGTGCTGGTCGCGTTTGCGGGCCTTGGCGCGGGCAATAGCGGCTTCCACTGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAAt                                             <  5:535869/149‑1 (MQ=14)
                                                                                                       aggccccccctt‑AGCCGTGTCCTGGTCCCGAGTGCCGGCTTTGGCTCTTGCAATAGCCGCTTCGACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa                                            <  5:418686/141‑1 (MQ=14)
                                                                                                        tcctcgggttt‑AGCCTTTTGCTGTGCCGGTTTGTTGGCCTTTGCGCGGGCAATAGCGGCTTCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa                                            <  4:371047/141‑1 (MQ=11)
                                                                                                        ggCGCCGCATT‑AGCCGGGTGCTGTTCGCGTGTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAg                                           <  7:333767/151‑1 (MQ=255)
                                                                                                          cTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCAACGGCGGCTTTGCCCCCCTCGTCCTGTGCTTCACCA‑TCCGCATTAGCCTGTTGCGGTTCCAGCTTGCTAGATTTGGcggggggggtgggg                                         >  5:1683745/1‑138 (MQ=255)
                                                                                                            ccGCATT‑AGCCGGCTGCTGTGCCCGGTTGCGCGCCTGGGCGCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGc                                       <  7:1638155/151‑1 (MQ=14)
                                                                                                              cccagtcgccggccgCTGTGCCCGGTTGCGCGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt                                      <  7:1476604/144‑1 (MQ=14)
                                                                                                               gccatcgcggggtGCTGTTCCCTCTTGTTCGCTTGTGCGCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt                                     <  8:1301079/139‑1 (MQ=14)
                                                                                                               cATT‑AGCCTTTTGCTGGTCGGGTTTTTGGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                    <  8:764358/151‑1 (MQ=14)
                                                                                                                gatgatccGGGTGCTGGGCCGGTTTGGGGGCGTTCGCGCGGGCAATAGCCGCTGCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                    <  1:1186263/145‑1 (MQ=14)
                                                                                                                 atgaGCCGGGTGCTGGTCCCGTTTGCGGGCGTGGGCGCGGGCAATAGCCGCGTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                   <  7:1243993/148‑1 (MQ=14)
                                                                                                                  t‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTGTGCGCAAATCGAGCTTGTATTCTAGC‑TCGGAATTAGAATGTTTATGTTACAGCTTGCGGGCTTTGGAAAGAGCAATAGAGGCTTCGAc                                 >  2:691996/1‑151 (MQ=14)
                                                                                                                   gagccttgtGCTGGTCCGGTTTGCGGGCGTGGGCGCGGGCAATAGCGGCGGCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGa                                  <  5:1623615/142‑1 (MQ=14)
                                                                                                                    acccGGGTGCTGGGCGCGTTTGCGCGCGTGCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg                                <  7:1096263/149‑1 (MQ=14)
                                                                                                                    aGCCTGTTGCTGTTCGCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc                                 <  8:1027481/150‑1 (MQ=14)
                                                                                                                    aGCCTGCTGCTGTTCGGGTTTGCTGGCGTGGGCGCGGGCAATAGCGGCGGCGACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg                                <  7:1734653/151‑1 (MQ=14)
                                                                                                                      gcttttGCTTTTTCCGCTTGCGGTCTTTGTTGCGTGCTATAGCCGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcgg                               <  4:1427540/146‑1 (MQ=14)
                                                                                                                          gtGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCt                          <  3:1366389/150‑1 (MQ=255)
                                                                                                                            gCTGTTCGTGTTTTCTGGCTTGAGCTCGGGCAATAGCGGCTTCTACTGCTGCTTTGCGCGGATCTACCTGTTCTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGATTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                        <  6:283212/151‑1 (MQ=11)
                                                                                                                             cggctCCCGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTg                       <  7:115781/147‑1 (MQ=255)
                                                                                                                               gttcgtgtttgttggcTTTGGCTCGTGCAATAGCGGCTTCTACGGCTGCTTTGCGCGGATCTACCTGTTGTTCTGGG‑TCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGTGCAATAGCGGCTTCGACGGCGGCTTTgcg                     <  4:1998129/137‑1 (MQ=11)
                                                                                                                                gagccGTTTGCGGGCGTGCGCGCGGGCAATAGCGGCTGCTACTGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcgg                    <  5:467182/148‑2 (MQ=14)
                                                                                                                                  cgggtttgttggcTTTCGCGCGGGCAATAGCCGCTGCTACTGCGGATTTGCGCGGATCTACCTGTTCTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCgg                  <  8:1677552/140‑1 (MQ=11)
                                                                                                                                     cgttGCGCGCCTGCGCTCGGGCAATAGCGGCGTCGACGGCCGCGTTGCGCGGATCCACCTGTTGTTCTGGC‑TCCGCATTAGCCTGCTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc               <  1:244172/149‑1 (MQ=14)
                                                                                                                                      cgtGCGCGCTTTGGCTCGTTCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGGTCTTCTGGC‑TCGTCTTTAGCGTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg              <  7:251115/149‑1 (MQ=14)
                                                                                                                                       ttGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCAGGATGGCAAGGAGAGACGTCTTCTT‑TGCCGTCACAATAAGAATGGTGCTGTTCCAGCTTGAGCGGTATTGAAAGCGCTATAGCGGCTTCGAcggcggggtgggcgggggcgg             >  5:1895283/1‑136 (MQ=255)
                                                                                                                                         ccccgcTTTGGCGCGGGCAATCGCCGCTGCGTCGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAcc           <  2:1391280/148‑1 (MQ=14)
                                                                                                                                              cTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGCCCTGTTGTTCTGCG‑TCGGGATTAGCCTGTTGGTGTTCCAGCTTGCGTGCTTTGGCCCGGTTAATCGCTTCTTCGCCGGCACTTTTTCGAGGATCATCCTggcg      >  3:1236425/1‑148 (MQ=2)
                                                                                                                                                  gccTCGGGCAGGAGCGGCTACGACGTCCGCTTCCCCCGTATCAACCTGTTCTTCTGGC‑TCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTtcttct  <  3:465378/149‑1 (MQ=11)
                                                                                                                                                     |                                                                                                                                                    
GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATT‑AGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCT  >  DH1/2169429‑2169724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑