Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5950GT22.9% 340.5 / 13.1 236V655V (GTC→GTA) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base G (34/131);  new base T (1/48);  total (41/195)
Fisher's exact test for biased strand distribution p-value = 8.27e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 239 total aligned reads displayed.

TTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTG  >  DH1/2169446‑2169741
                                                                                                                                                     |                                                                                                                                                   
ttttccTGTTGCTGTTGCTGGTTGGTTGCTTTGGCGCGGGCAATAGCCGCTTGTACGGCAGGTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                                                     <  4:1269295/146‑1 (MQ=21)
  atccTGTTGCTGTTCGAGCTTGCGTGCTTTTGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                                                   <  6:1233713/148‑1 (MQ=255)
  aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                                                   <  1:1117492/150‑1 (MQ=255)
  aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                                                   <  8:41148/150‑1 (MQ=255)
    ccTGTTGCTGGTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                                                <  3:1567031/151‑1 (MQ=255)
    ccTGTTGCTGGTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                                                <  3:1683838/151‑1 (MQ=255)
       ggtccTGTACCAGCTTGCGCGCTTTGGCGCGTGCAATAGCCGCGGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcg                                                                                                                                               <  7:1047452/145‑1 (MQ=17)
       gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcgg                                                                                                                                              <  6:1851173/150‑1 (MQ=255)
          gcggctCCCGCTTGCGTGCTTTGGGCCGGGGACTAGCGGCGTCGCCGGGTGGCTTGCGCGGTTCAACCTGTGCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGGGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                                          <  5:1234296/146‑1 (MQ=14)
          gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                                          <  4:312788/151‑1 (MQ=255)
          gCTGTTCCAGCTTGCGTGCGTGGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                                          <  1:474259/151‑1 (MQ=255)
             ggtCCTGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg                                                                                                                                         <  2:1223307/147‑1 (MQ=255)
               tCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGAGCTTTGGCTCGGGCAATAGCGGCTTGGACGGCGGCtgggcggg                                                                                                                                     >  8:1476535/1‑144 (MQ=255)
                 cAGTTTGCGTGCTTTCGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                                                                                                                                   <  2:1882991/151‑1 (MQ=255)
                 cAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCAGCTTCGACGGCGGCTTTGCGCGGa                                                                                                                                   <  3:2001968/151‑1 (MQ=255)
                  ggCTTGCGGGCGTGGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                                  <  7:881106/150‑1 (MQ=255)
                  cgCTTGCTGGCTTTCGCGCGGGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                                  <  2:1677903/150‑1 (MQ=255)
                  cgCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                                  <  3:290093/150‑1 (MQ=255)
                  aGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTATTATGGCTCCTCATAAGACCGTTCATGTTCCCAAATGCGCGATTTCGAAAGGTCAATAGAAGCAACGACGGCGGCTTTGCGCGGAt                                                                                                                                  >  5:644215/1‑151 (MQ=255)
                   gcttgcttgcttTTGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                                                                                                                                   <  6:1435184/149‑1 (MQ=255)
                   gCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCACCCTGGTCTTCTGGATCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCAAGGGCAATAGCGGCTTCGCCGGCGGCGTTGGGCGGagg                                                                                                                                 >  1:1362191/1‑149 (MQ=11)
                   ccTTGCGGGCGGTGGCGCGGGCAATAGCCGCTGCCACGGCAGCTGTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                                                 <  5:1399547/150‑1 (MQ=17)
                      tGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACATGTTCTTCTGGGTCCGCATTAGCCGGTTGCTGTTACAGGTTGCGCGCTTTGGCGCGGGCAGTTGGGGCGTGGACGGGGGGGTTGGGCggtgcc                                                                                                                                >  1:610498/1‑145 (MQ=255)
                      tGCGTGCTTTGGCGCGGGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg                                                                                                                                <  2:1533941/149‑1 (MQ=255)
                       gCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCTACCTGTTCTTCTGGCTCAGCATTAGCCGGTTGCTGTTCCAGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGGTTGCGCGGagggcgg                                                                                                                             >  7:306789/1‑145 (MQ=14)
                        cGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                                                            >  8:115628/1‑151 (MQ=255)
                        cGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                                                            <  3:1020670/151‑1 (MQ=255)
                        attGCTTTCTCGCTTTCAATAGCCGATTCTACTGCTGCTTTGCGCTGTTCTACTTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCGCGTTTTCGGGCTTTTGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGAcc                                                                                                                             <  4:1607387/148‑1 (MQ=14)
                          ggcgtttgcgcGGGCAATAGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtg                                                                                                                           <  6:1053085/143‑1 (MQ=14)
                          ggcgttGGCGCGTGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAcc                                                                                                                             <  5:1745644/144‑1 (MQ=17)
                          ggcgtgtgcgatttcAATAGCCGCGGCCACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgt                                                                                                                          <  4:1076889/137‑1 (MQ=14)
                           gcgtgggCGCGGGCAATAGCCGCTGCCACTGCAGCTTTGCGCGTATCAACCTGTTCTTCTGGCTCCGCATTAGCCTTGTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                                         <  8:512876/146‑1 (MQ=14)
                               tagcgcGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTgttgtt                                                                                                                      <  1:394762/148‑1 (MQ=255)
                                cgcgcGGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                                    <  3:94980/150‑1 (MQ=14)
                                cccacccccacgaGCCGCACCGCCGGCTGCCTTGCGCGGAGCCACCTCGTCAACACGAGCCGCATTACCCTGAGGCGGGTCCAGACTGCGCGCCTTGGGAGCTGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                                    <  1:1629250/139‑1 (MQ=2)
                                  ggcgTGCAATAGCCGCTGCGACGTGAGCTTTGCGCGTATCAACCTGTTGTTCTGGCTCGTGATTAGCCTGTTGCTGTTCCCGTTTGCTGGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTgg                                                                                                                  <  1:962045/150‑1 (MQ=14)
                                    cggggaaTAGGCGCTTCTTCTTCCGCTTTGCGCGGATCTAGCTGTTCTTCTGTTTCCGCTTTAGCCTGTTGCTGTTCGAGTTTTGGTGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTgg                                                                                                                  <  2:651389/144‑1 (MQ=2)
                                    cgTGCAATAGCCGCTTCTACGGCAGCTTTGCGCTGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑t                                                                                                               <  7:1771634/151‑1 (MQ=255)
                                    cgTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑t                                                                                                               <  1:703012/151‑1 (MQ=255)
                                    ccgcccttAGCCCCTTCGACGGCTGCTTTTTGATTATCTACCTGTTCTTCTGTGTCCGCATTAGATGTTTGCTGTTTTAGCTTCCTCGCTTTGGCTCGGTGAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTGTTCTggtt                                                                                                                <  2:468082/144‑3 (MQ=2)
                                       gCAATAGCCGCTTCTACTGCCGCTTTGCGCGTAGCTACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCGCGTTTGCGCGCTTTTGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCg                                                                                                             <  5:2006473/150‑1 (MQ=14)
                                       ccAAGAGCCGCTTCTAGTTCTGCTTTGCGCGGATCCACCTGTTCTTCTGGAACGTGAGTCGAGTGGTGCTGTTCGAGCTTGCGTGCTTTCGCTCGGGCAATAGCGGCTTCCACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGT‑Tccg                                                                                                            <  5:1599453/150‑3 (MQ=2)
                                            aGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCAtt                                                                                                        <  1:1852095/150‑1 (MQ=255)
                                             ggcGCTTGGACGGGAGCTTTGCGAGGATCAACCTGATCTTCTGCCTCCGCTTTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGTATCGACCTGTTGTTCTGGC‑TGGGCATTAg                                                                                                      <  1:1873428/149‑1 (MQ=14)
                                              ccGCGTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGc                                                                                                     <  3:436429/151‑1 (MQ=255)
                                                 gggctactgccgCTTTTGGCGGAGTAACCTGTTCTTCTGGCTCCTCTTTAGCCTGGTGCTGTTCGCGTTTGCGGGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCt                                                                                                   <  6:1708697/139‑1 (MQ=14)
                                                 cggctaCGGCAGCTTTGCGCGGAGCAACCTGTTCTTCTGGGTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTg                                                                                                  <  1:1983553/146‑1 (MQ=17)
                                                  ttCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTTCCTCAGCAATACCCGGTTGCTGTTACAGTTTGCGAGATTTGGCAAGGGCAATAGCGGCTTCGACGGAAGAATTGAGCGGATCGACCTGTTGTTCAGCG‑TCGGcgggtgcgggt                                                                                                 >  2:1388679/1‑141 (MQ=2)
                                                    gtacgtctgCTTTGCTCTTATCTACATGTTCTTATTGCTCGGTTTTAGCCTGTTGCTGTTCGCGTTTGTTGGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTg                                                                                               <  4:485829/143‑1 (MQ=14)
                                                      acttcAGCTTTGCGCGGATCAACCTGTTCTTCTGGTTCCGCATTATCCGGTTGATGTTCCTGTTTGCTTGTTTTCGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCt                                                                                             <  4:981579/147‑1 (MQ=14)
                                                      actgCAGCGTTGCGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCt                                                                                             <  2:616924/148‑1 (MQ=255)
                                                           ggCTTTGCGCTTAGCCACCTGGTCTTCTGGCTCCGCATGAGCCTGGTGCTGTGCGGGTTTGTGCGCTTTGGCGCGGGCAATAGCGGCGGCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTcc                                                                                        <  6:393474/150‑1 (MQ=11)
                                                            gCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCAGCTTTCCGAGGATCCACCACTTGTTCTGCG‑TCCGAATTAGCCTgaagatcttcc                                                                                        >  8:449186/1‑140 (MQ=14)
                                                            gCTGTGCGCGGTTCCACGTGCTCTTCTGCCTCCGCATCACCCTGGTGCTGTGCGCCTTTGCTCGCGTTGGCGCGGGCAATAGCCGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑GCGGCATTAGCCTGTTGCTGTTCCa                                                                                       <  7:1989822/151‑1 (MQ=14)
                                                               tttcgagtaTCTACCTGGTCTTCTGGCTCCGGATTAGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAg                                                                                      <  3:57674/141‑1 (MQ=14)
                                                               ttGCGCTGATCTACGAGTTCTTATGGCTCGGCATTATCCTGTTGCTGTTCGGGTTTGTGGGCTTTGGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAg                                                                                      <  8:1537430/149‑1 (MQ=11)
                                                                 gggcgTATCAACCTGTTCTTCTGGCTCGTCATCAGCCTGGTGCTGTTCGGGTTTTTTGGCTTTTGCGCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCtt                                                                                   <  7:594598/148‑1 (MQ=14)
                                                                  gtcgGATCATTCTGTTCTTCTGGCTCTGCATTAGTCTGTTGCTGGTCGGGTTTGGGGGCGTTGGCGCGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGc                                                                                 <  8:297053/149‑1 (MQ=14)
                                                                  cgcgGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGc                                                                                 <  7:1628452/151‑1 (MQ=255)
                                                                       attcaacTGTTCTTATTGCTCCGTATTATCCTTTTGCTGTTCGCGTTTTCTGGCTTTTGCGCGTGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGG‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc                                                                             <  2:1812753/144‑1 (MQ=9)
                                                                        tCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGATTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCAACGGCAGATTTACGAGGATCAACAACTTGTTCTGCG‑TCGTAATTATCCTGAAGATCTTCCAGAttcccacatt                                                                           >  8:583489/1‑143 (MQ=255)
                                                                        gctaCCTGGTCTTCTGGCTCGGCATTACCCGTCTGCTGTGCGGGTTTGCTCGCCTGCGCGCGGGCAATAGCGGCGTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCtt                                                                           <  8:1406522/148‑1 (MQ=14)
                                                                                    tctGGCTCCGCATTAGCCGGTTGCTGGTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCa                                                                <  7:1453948/150‑1 (MQ=255)
                                                                                     caggcgcctcaagaGCCGGCTGCTGGTCCCGTTTGCTCGCGTGCGCGCGGGCAATAGCGGCTGCGACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAAt                                                              <  5:1111392/138‑1 (MQ=17)
                                                                                      aggcccccccttAGCCGTGTCCTGGTCCCGAGTGCCGGCTTTGGCTCTTGCAATAGCCGCTTCGACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa                                                             <  5:418686/141‑1 (MQ=14)
                                                                                       tcctcgggtttAGCCTTTTGCTGTGCCGGTTTGTTGGCCTTTGCGCGGGCAATAGCGGCTTCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa                                                             <  4:371047/141‑1 (MQ=11)
                                                                                         cTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCAACGGCGGCTTTGCCCCCCTCGTCCTGTGCTTCACCA‑TCCGCATTAGCCTGTTGCGGTTCCAGCTTGCTAGATTTGGcggggggggtgggg                                                          >  5:1683745/1‑138 (MQ=255)
                                                                                           ccGCATTAGCCGGTTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg                                                          <  8:461414/149‑1 (MQ=255)
                                                                                            cGCATTAGCCTGGTGCTGTTCCCGTTTGCGGGCGTGGGCGCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt                                                       <  7:1169870/151‑1 (MQ=14)
                                                                                             gccatcgcggggtGCTGTTCCCTCTTGTTCGCTTGTGCGCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt                                                      <  8:1301079/139‑1 (MQ=14)
                                                                                              gatgatccGGGTGCTGGGCCGGTTTGGGGGCGTTCGCGCGGGCAATAGCCGCTGCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                                     <  1:1186263/145‑1 (MQ=14)
                                                                                              cATTAGCCTTTTGCTGGTCGGGTTTTTGGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                                     <  8:764358/151‑1 (MQ=14)
                                                                                              cATTAGCCTGTTGCTGTTCGCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                                     <  4:676491/151‑1 (MQ=255)
                                                                                               aTTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGG‑TCGGGATTATGCTGTTGGTGTTCCAGCTTGCGTGGGTTTGCCCGGTCAATAGCttcttct                                                    >  7:400922/1‑150 (MQ=14)
                                                                                               aTTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGA‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGAGGCTTCg                                                    >  8:468987/1‑151 (MQ=255)
                                                                                                  aGCCTGCTGCTGTTCGGGTTTGCTGGCGTGGGCGCGGGCAATAGCGGCGGCGACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg                                                 <  7:1734653/151‑1 (MQ=14)
                                                                                                  aGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAGAACCGGATACGACGGCGGGTTTCGGCGGAAAGAGATGTAGTTCTGGG‑TAGGCCTTAGCCTGTTGCTGTTAAAGCTTGCGGGCTTTGGCGCGGGCagggggggcgtggccg                                                 >  7:628744/1‑136 (MQ=255)
                                                                                                  aGCCGGGTGCGGGGCCCGTTTGGGCGCGTGCGCGCGGGCAATAGCCGCGTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc                                                  <  3:1313878/150‑1 (MQ=14)
                                                                                                    gcttttGCTTTTTCCGCTTGCGGTCTTTGTTGCGTGCTATAGCCGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcgg                                                <  4:1427540/146‑1 (MQ=14)
                                                                                                      ggTTGCTGTTCCTGTTTGCGATATTTTGATCTGGCTATAGCTGCTTCGAGGGCTTCTTTGCGCGGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcgg                                             <  8:1097062/151‑1 (MQ=14)
                                                                                                      ggTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCAAcggca                                                                                                                                               >  6:1359505/1‑53 (MQ=255)
                                                                                                        gtGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCt                                           <  3:1366389/150‑1 (MQ=255)
                                                                                                        gtGCTGGTCCCGTTTGCGCGCGTTGGCGCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGTAATAGCGGCTTCGACGGCGGCt                                           <  7:1136822/150‑1 (MQ=255)
                                                                                                          gCTGTTCCGGTTTGAGAGCGTTCGCTCGGTCAATAGGGTCGTCCACGGCGGCTTTGCGCTGAGCTACCTTTTGTTCTGGA‑TCGGAATTAGCCTGTTGCTCTTCCAGCTTGCGTGCTTTTGAACGGTCAATAGCGGCTTCGACGGCGGCttt                                         <  7:1527454/151‑1 (MQ=9)
                                                                                                          gCTGTTCCCGTTTGCGCGCGTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt                                         <  5:587578/151‑1 (MQ=255)
                                                                                                            ggtccccGCTTGCGAGCTTTCGCGCGGGCAATAGCCGCGTCGAGGGCTGCATGGCGCGGATCGACCGGCGGTTCGGCC‑TCCGCACTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgc                                       <  1:436386/147‑1 (MQ=11)
                                                                                                             gttcgtgtttgttggcTTTGGCTCGTGCAATAGCGGCTTCTACGGCTGCTTTGCGCGGATCTACCTGTTGTTCTGGG‑TCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGTGCAATAGCGGCTTCGACGGCGGCTTTgcg                                      <  4:1998129/137‑1 (MQ=11)
                                                                                                                 ccGCTTTCGCGCGTGTGCTCGGGCAATAGCCGCGGCCACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTTGC‑TCGGCATTAGCCTGTTGCTGTTCCCGGTTGCGTGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                                  <  8:1241241/151‑1 (MQ=11)
                                                                                                                   cgttGCGCGCCTGCGCTCGGGCAATAGCGGCGTCGACGGCCGCGTTGCGCGGATCCACCTGTTGTTCTGGC‑TCCGCATTAGCCTGCTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                <  1:244172/149‑1 (MQ=14)
                                                                                                                     ttGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCAGGATGGCAAGGAGAGACGTCTTCTT‑TGCCGTCACAATAAGAATGGTGCTGTTCCAGCTTGAGCGGTATTGAAAGCGCTATAGCGGCTTCGAcggcggggtgggcgggggcgg                              >  5:1895283/1‑136 (MQ=255)
                                                                                                                      ttctggccttcgcgcGGGCAATAGCGGCGTCTACGGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGa                              <  6:1139934/136‑1 (MQ=11)
                                                                                                                             gttGGCGCGGGCATTAGCCGCTGCAACTGCGGCTTTGCGCTGATCTACCTGTTGTTCTGGC‑TCGGCATTAGCCTGGTGCTGTTCCAGCTTGCGGGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGttct                      <  8:228139/150‑1 (MQ=11)
                                                                                                                                    cGGGCAATAGCCGCTTCTACTTCCGCTTTGCGCGGATCCACCTGTTGTTCTTTA‑TCTTCATTAGCCTGTTGCTGTTCCAGCTTTCGTGATTTTGCTCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGtt               <  2:2003361/151‑1 (MQ=11)
                                                                                                                                     gggCAATAGCCTCTGCTACGTCTGCTTTGCGCGGATCCACCTGTTCTTCTGGC‑TCGGCTTTAGCCTGTTGCTGTTCCAGCTTGCTTGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTc              <  4:640912/151‑1 (MQ=11)
                                                                                                                                      ggCAATAGCCGCGTCAACTGCGGCTTTGCGCGGATAGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTGCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTcc             <  5:49797/151‑1 (MQ=14)
                                                                                                                                       gCAATCGCGGGTTCAGCGGCGGCTTTGCGCGCAGCGACCTGTTGTTCGGGC‑TCGGCTTTAGCCTGGTGCTGTGCCAGCTTGCGTGCGTTGGCTCGGGCAATAGCGGCGTCGACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCg            <  5:442341/151‑1 (MQ=14)
                                                                                                                                        cAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGG‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCACGGGCGATAGCGGCTTCCACGGCGGATTTTCGTGGATCGGCATCTGGTTCTGGGTcctt           >  3:245402/1‑149 (MQ=11)
                                                                                                                                         aaTAGCGGCGTCCACTGCGGATTTGCGCGTATCGACCTGTTGTTATTGC‑TCGTCATTAGCCTGCTGCTGTTCCCGCTTGCTGGCTTTGGCTCGGGCAATAGCCGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCa          <  3:1497893/151‑1 (MQ=14)
                                                                                                                                            aGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCTGCTTCAACGGCTGATTTACGAGGATCGCCCTCTGCTTCTGCTTcctaattt       >  8:1842681/1‑145 (MQ=11)
                                                                                                                                            aGCCGCTTCCACTGCGTCTTTGCTCGGATCAACCTGTGGCTCTGGA‑TCGTCATCACCCTGCTGCTGGTCCCGTTTGCGGGCTTTCGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTa       <  3:1180368/151‑1 (MQ=2)
                                                                                                                                                     |                                                                                                                                                   
TTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGC‑TCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTG  >  DH1/2169446‑2169741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑