| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | DH1 | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 3,668,919 | 1 | . | T | 95.0% | 1319.0 / 50.5 | 379 | pseudogene (358/455 nt) | lpxA | hydroxymyristoyl‑ACP dehydratase |
| Reads supporting (aligned to +/- strand): ref base . (17/2); new base T (177/183); total (194/185) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.78e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 411 total aligned reads displayed.
CCCTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑TTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCTGT > DH1/3668769‑3669064 | cccTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGccgcgccgc‑g > 8:541605/1‑151 (MQ=255) ccTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t > 3:193537/1‑151 (MQ=255) tCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGACCGCGGCGC‑G‑ttt‑tt < 7:398499/150‑1 (MQ=255) caATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑ttt‑tttcgaa < 2:947826/151‑6 (MQ=255) aaTGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCACCCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑ttt‑tttcgaa > 8:862085/1‑145 (MQ=255) tGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGt > 5:83758/1‑151 (MQ=255) ggCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTg < 6:708616/151‑1 (MQ=255) gCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTg > 2:716756/1‑150 (MQ=255) tGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTcc > 5:121081/1‑151 (MQ=255) ggATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTcc < 2:1224614/150‑1 (MQ=255) ggATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCa < 4:528271/151‑1 (MQ=255) aTGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACATCCATg > 8:576602/1‑151 (MQ=255) acaAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATc > 1:561868/1‑150 (MQ=255) aaaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGCCTTCCATGATCAtt > 6:1269343/1‑151 (MQ=255) aaaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCAtt > 6:1063944/1‑151 (MQ=255) aaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCAttt > 1:632123/1‑151 (MQ=255) aaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCAttt > 2:1336562/1‑151 (MQ=255) aaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCAttt < 5:1354898/151‑1 (MQ=255) cGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATc < 4:37651/151‑1 (MQ=255) cGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATc < 5:680977/151‑1 (MQ=255) ggATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCg > 7:1607924/1‑151 (MQ=255) ggATTTATCAATCACGTATCACGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCg < 2:1028686/151‑1 (MQ=255) aTTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGcc < 5:487136/151‑1 (MQ=255) tATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAgg > 8:356591/1‑151 (MQ=255) atcaatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGc < 2:1521315/151‑1 (MQ=255) cactcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCAc < 6:1379934/148‑1 (MQ=255) aatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGCGG‑TTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACg > 5:1561864/1‑151 (MQ=255) aatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACg > 5:1142690/1‑151 (MQ=255) aatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTAAACCATCGACAAGAGCAACCCCATTAAAACGGGACAGGCCGCGGCGA‑G‑TTTAATCGAAAGTGACTACCATCATCATTTGATCTCAAAGCAcc > 6:1571500/1‑150 (MQ=255) caCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGAcc < 2:803276/151‑1 (MQ=255) aCGTATCAGGCCTCCCGGCTACTAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCg < 7:1498692/151‑1 (MQ=255) cGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCgg < 7:1229628/151‑1 (MQ=255) cGTATCAGGCCTCCCGGCTACGAGCACACATCATCGATGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGCGTCAGCCCGCGGCGC‑GTTTT‑TTCGAAACTGACTTCCATCATCATTTGATCGCCAGGCACGACCgg > 6:506610/1‑151 (MQ=255) aTCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGgcg > 2:1450967/1‑151 (MQ=255) aTCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGgcg > 6:779255/1‑151 (MQ=255) tCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCGATGATCATTTGATCGCCAGGCACGCCCGGgcgc > 6:1636439/1‑151 (MQ=255) aGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCtt > 1:239460/1‑151 (MQ=255) aGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCtt < 1:1488483/151‑1 (MQ=255) gCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGa < 7:740952/151‑1 (MQ=255) ccTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGTCTTCCATGATCATTTGATCGCCAGGCACGCCCGGGCGCTTGa > 1:774489/1‑150 (MQ=255) ccTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGaa < 7:1002336/151‑1 (MQ=255) cTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGa > 4:1184383/1‑149 (MQ=255) tCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgc > 3:603707/1‑151 (MQ=255) cccGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgcg < 3:33961/151‑1 (MQ=255) gCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCt > 3:642801/1‑151 (MQ=255) cTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCC‑TTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTc > 5:1419496/1‑151 (MQ=255) aCGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCg < 5:1091776/151‑1 (MQ=255) cGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGt > 4:707087/1‑151 (MQ=255) gAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTc < 1:320781/151‑1 (MQ=255) gCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCa > 5:1662298/1‑150 (MQ=255) cacacaTCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAAt > 5:208264/1‑151 (MQ=255) acacaTCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAAt > 3:788292/1‑150 (MQ=255) acacaTCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATa < 1:1051603/151‑1 (MQ=255) catcatCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCa < 1:1348260/151‑1 (MQ=255) atcatcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAg < 1:1614247/151‑1 (MQ=255) atcatcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAg < 6:188993/151‑1 (MQ=255) catcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGc < 4:1349972/150‑1 (MQ=255) catcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCg < 3:1032433/151‑1 (MQ=255) atcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGa < 1:433899/151‑1 (MQ=255) ggTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAag < 2:334957/150‑1 (MQ=255) gCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAACACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagtag < 6:315441/150‑1 (MQ=255) gCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGGTCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagtagt > 8:288569/1‑151 (MQ=255) cAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCt < 4:1251429/151‑1 (MQ=255) aaaCTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTc < 7:1331839/151‑1 (MQ=255) aaCTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGCGG‑TTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCACGCACGACCGGGCGCGTGAAGCGCGCGTGGGCAATACCAGCGAAGGAGTACAGcgcc > 7:588333/1‑148 (MQ=255) actactTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCAc < 3:1555667/151‑1 (MQ=255) tactTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCAccc > 2:654217/1‑151 (MQ=255) ctTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCgg > 4:153946/1‑151 (MQ=255) ttACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGt < 7:1155343/150‑1 (MQ=255) ccATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGTCGC‑GTTTT‑TTCGAAAGTGACTTCCATTATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCGTCGTCAATACCAGCGAAGTAGTAAAGCTCACCCGGGTcc > 5:649366/1‑150 (MQ=255) ccATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCCCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTcc > 7:352482/1‑150 (MQ=255) aTCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGt < 4:813624/151‑1 (MQ=255) cGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGtt < 3:1118610/150‑1 (MQ=255) gACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGtttt < 3:1363692/151‑1 (MQ=255) aCCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGAACGGGCGCTTGAAGCGCCCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCACTTTTc > 5:275099/1‑151 (MQ=255) cAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCTCTT‑TTT‑TTCTAAAGTGACTTCCATGATGATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCt < 8:1215199/151‑1 (MQ=255) cAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCTGGTTCCAGTTTTCCt > 3:97924/1‑151 (MQ=255) cAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCt < 8:630076/151‑1 (MQ=255) agagCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCt > 1:903488/1‑150 (MQ=255) agagCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTa < 8:147140/151‑1 (MQ=255) gCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGGTTTCCTACgg > 4:403177/1‑150 (MQ=255) cAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCt > 4:986370/1‑151 (MQ=255) aaCCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTAAGCtt > 8:465082/1‑151 (MQ=255) ccccTTTAAAAGGGGTCAGGCAGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCtttt < 8:130553/151‑1 (MQ=255) ccccTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCtttt > 3:458252/1‑151 (MQ=255) ccTTTAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTaa < 1:1217348/151‑1 (MQ=255) tttAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTACGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTATAAAc > 2:238315/1‑151 (MQ=255) ttAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGGTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAAc < 4:1063133/150‑1 (MQ=255) ttAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTaaa < 2:612777/149‑1 (MQ=255) tAAAACGGGTCAGGCCGCGGCGCGG‑TTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCTGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGc > 8:709786/1‑151 (MQ=255) tAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGc > 1:118375/1‑151 (MQ=255) tAAAACGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGc > 8:112844/1‑151 (MQ=255) aaCGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGcc > 2:1639739/1‑149 (MQ=255) aaCGGGTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAg < 4:23555/151‑1 (MQ=255) gggTCAGGCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAAt < 7:1675884/151‑1 (MQ=255) gCCGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGtt < 6:120735/151‑1 (MQ=255) ccGCGGCGC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTg < 8:1032676/151‑1 (MQ=255) ggcgC‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCtg > 5:339311/1‑151 (MQ=255) gcgc‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCtgt < 7:447974/151‑1 (MQ=255) gcgc‑GTTTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCtgt < 6:1451708/151‑1 (MQ=255) | CCCTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑TTT‑TTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCTGT > DH1/3668769‑3669064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |