Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH1613,7700CA33.8% 191.7 / 40.6 182intergenic (+631/+392)garK/yhaCglycerate 2‑kinase/pentapeptide repeats‑related protein
Reads supporting (aligned to +/- strand):  ref base C (81/15);  new base A (48/1);  total (165/17)
Fisher's exact test for biased strand distribution p-value = 1.19e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 183 total aligned reads displayed.

TATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGTTCCGGCGGGTTTC  >  DH1/613623‑613919
                                                                                                                                                    |                                                                                                                                                       
tataCCCAAAAGAAAGCGGCTTATCGGTCAGTTTAACCTGGTTTACGTAAAAACCCGCTACGGCGGGTTTATGCTTTTGGAGTGGCAGAAATAGGAGGGACTGTCCACGACAATATACCAAAAAGATAGCGTATTGT‑AAGTCAGTTTCAc                                                                                                                                                       >  8:1306809/1‑150 (MQ=11)
    cccAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACCCTATCAACAAAACAACGCTGAACAT‑CAGTCACATTAACCTGtt                                                                                                                                                  >  1:884543/1‑151 (MQ=11)
        aaagaaagCGGCTTATCGGTCAGTTTAACCTGGTTTACGTAAAAAACCGATACGGCGGGTTTAAGATTTTTGAGTGCCATATAGATCAAAACCTGTACCAGAAACTAAACACAAAAGAAATATGGTTAT‑CTCTCAGTTTTACCGGtttaa                                                                                                                                               >  6:1235038/1‑148 (MQ=2)
                 ggCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGGTTCGGCGGGTTTTTGATTTTGGAGTGCCAGAAATATGAAAGGCTGTCCCCGACACTATACACAAAAGAAAGCGCCTTAT‑CGCTAATTTTAAAATTTTGTACGtaataaac                                                                                                                                     >  5:1227234/1‑149 (MQ=2)
                   cTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATAGCAAAAAGAAAGCGGCTTAT‑CGGTCAGTTTTACCTGATATACGTaaaaaacac                                                                                                                                   >  3:93822/1‑147 (MQ=11)
                     tATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTTGAGTGGCAGAAAGAGGAATGACTGTCCACGACAAGCTACGAAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACGTTTTGTAAGTaaaaaaacgcg                                                                                                                                 >  1:712543/1‑145 (MQ=11)
                     tATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTAAGTTTAACCTGTTTTACGTAATAAACCGCt                                                                                                                                 >  4:408154/1‑151 (MQ=255)
                       tCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGATGTACGTAAAAACCCGGTTc                                                                                                                               >  1:428483/1‑151 (MQ=255)
                         ggTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGATTTACGTAAAAAACCGATAcgg                                                                                                                             >  4:1210625/1‑151 (MQ=255)
                          gTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAAAAACCCGATTcggc                                                                                                                            >  8:227841/1‑151 (MQ=25)
                           tCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAATAACCCGCTTcggcg                                                                                                                           >  1:667203/1‑151 (MQ=25)
                            cAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGATTTACGTAAAAAACCGATAcggcgg                                                                                                                          >  8:809641/1‑151 (MQ=255)
                             aGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAATAACCCGATTCGGCggg                                                                                                                         >  1:1003872/1‑151 (MQ=255)
                             aGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGATTTACGTAATAAACCGCTACGGCggg                                                                                                                         >  2:1367588/1‑151 (MQ=255)
                               tttCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGATTTACGTAAAAACCCGATTCGGCGGGtt                                                                                                                       >  1:102167/1‑151 (MQ=18)
                               tttCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAAAAAACCGGTTCGGCGGGtt                                                                                                                       >  3:462971/1‑151 (MQ=255)
                                ttCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGTTGTACGTAAAAACCCGCTGCGGCGGGttt                                                                                                                      >  1:216662/1‑151 (MQ=255)
                                  cACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGTTTTACGTAAAAACCCGGTACGGCGGGttta                                                                                                                     >  4:976438/1‑149 (MQ=255)
                                    ccTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGATTTACGTAAAAACCCGCTACGGCGGGtttaac                                                                                                                   >  4:301482/1‑147 (MQ=16)
                                      tGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGGTTCGGCGGGTTTGTA‑Ct‑t                                                                                                              >  8:466029/1‑151 (MQ=255)
                                      tGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑Ct‑t                                                                                                              >  7:1499270/1‑151 (MQ=38)
                                      tGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAAAAACCCGATTCGGCGGGtttgtgatt                                                                                                                >  2:712640/1‑145 (MQ=255)
                                        gTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTGTA‑Ct‑ttt                                                                                                            >  8:1499136/1‑151 (MQ=37)
                                        gTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTGCGGCGGGTGTGTA‑Ct‑tgt                                                                                                            >  3:997559/1‑149 (MQ=255)
                                        atttACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACCCTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGttt                                                                                                                                                 >  3:1073998/2‑116 (MQ=14)
                                         tttACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACGTGTTTTACGTAAAAAACCGGTGCGGCGGGTTTATA‑Ct‑tttt                                                                                                           >  5:1467281/1‑150 (MQ=11)
                                           tACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGTTTTACGTAAAAACCCGCTGCGGCGGGTTTGTG‑Ct‑tgttg                                                                                                          >  1:1505610/1‑146 (MQ=11)
                                             cGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGATTTACGTAAAAAACCGGTCCGGCGGGTTTTTC‑CT‑TTTTGAgt                                                                                                       >  3:1442924/1‑150 (MQ=11)
                                                aaaaaCCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGATTTACGTAATAACCCGGTGCGGCGGGTTTTAA‑CT‑TTTTGAGGGGc                                                                                                    >  7:1325560/1‑151 (MQ=11)
                                                aaaaaCCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAATAACCCGCTACGGCGGGTTTTAA‑CT‑TGTGGAGTGGc                                                                                                    >  6:595370/1‑151 (MQ=11)
                                                   aaCCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGTTTTACGTAAAAAACCGATTCGGCGGGTTTGTA‑CT‑TTTTGAgtgccat                                                                                                  >  8:1482601/1‑144 (MQ=11)
                                                    aCCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAA‑CGGTCAGTTTAACCTGATTTACCTAAAAAACCGATACGGCGGGATTAAA‑CT‑TTTagagtgcccta                                                                                                 >  6:1356562/1‑143 (MQ=11)
                                                       cGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTCTC‑CT‑TTTTGAgtgcgagtt                                                                                                >  7:1399257/1‑140 (MQ=11)
                                                       cGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGATTTACGTAAAAAACCGATACGGCGGGTTTTTA‑AT‑TTTTGAgtgggatatatt                                                                                             >  6:326131/1‑143 (MQ=11)
                                                        gCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAAAAAACCGATACGGCGGGTTTATG‑AT‑TTTGGAGTGGCATaaata                                                                                             >  5:824866/1‑148 (MQ=11)
                                                          ttgggcggGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTG‑CT‑TTTGGAGTGGCAGAAATatgt                                                                                          >  5:349967/4‑150 (MQ=255)
                                                          ttCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTAGAGGGCAATATCCCACATATCAAGGGGAGTAT‑CGGTCAGTTTCCGCTGTTTTACGTAAAAACGCGATTAGGAGGGTTTTTG‑GT‑TTTGGAGGGGGAGCTAGatgc                                                                                          >  3:768674/1‑150 (MQ=2)
                                                          ttCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACAGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAAACCGATACGGCGGGTTTTTA‑CT‑TTTTGAGTGGCATAAAgt                                                                                             >  7:712884/1‑147 (MQ=11)
                                                            cggcggGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGATTTACGTAAAAAACCGATTCGGCGGGTATAAA‑AT‑TTTGGAGTGGCatatataaaaa                                                                                         >  8:1043621/1‑140 (MQ=11)
                                                              gcggGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTGCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAgtagaaagc                                                                                      >  8:575549/1‑143 (MQ=255)
                                                                gggTTTTTGCTTTTGGAGTTGATTAAACTGCAATGACTGCCCACGACACTATACCCTAAACATCGCGTCTTAT‑CGGTCTGTTTCACCTTCTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACt                                                                                    <  7:1117916/151‑1 (MQ=11)
                                                                  gTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAAACCGCTGCGGCGGGTTTTAA‑AT‑TTTTGAGTGCCAGAAatatcatccacatt                                                                                  >  7:158924/1‑141 (MQ=11)
                                                                   tttttGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAATAAACCGATTCGGCGGGTTTTTA‑AT‑TTTTGAGTGGGAGTAATATGAATGACTTTc                                                                                 >  7:1430386/1‑151 (MQ=11)
                                                                       catctttgcccgggCAGAAAGATCACTCACTGCCCACGACATTATATACAATATACTGCGCCTTAT‑CTGTCATTTTCACATTTTTTACGTATTAACCTGCATGTGCGTGTTTTTA‑TT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACg                                                                             <  4:622013/140‑1 (MQ=2)
                                                                        gCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGTTGTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGCGAGAAAGAGGACTGACTGTcgccg                                                                             >  7:792853/1‑146 (MQ=11)
                                                                           tttGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGATTTACGTAAAAACCCGATACGGCGGGTTTATA‑CT‑TTTTGAGAGAAAGAAAGATGAATGACTGTCCACGaca                                                                          >  8:1444038/1‑150 (MQ=11)
                                                                            ttGGAGGGGCAGAAAGATGAATGACTGTCCACGACAGTATACGAAAAAGCCAGGGGCGTAG‑AGGTCACTTTCCCGTGTTTTACGTAAATACCCGGGTCGGAGGGTTTTTA‑CT‑GTTGGGGGGGCAGCATGctgaatgcgtggcgccgcgcgg                                                                        >  3:621548/1‑136 (MQ=2)
                                                                                       gAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGTTTTACGTAATAACCCGCTGCGGCGGGTTTTTC‑CT‑TGTTGAGTGCCCGAAAGAGGTAACTCAGTCCCCGACACTGAACTCaaa                                                               >  1:1349061/1‑149 (MQ=11)
                                                                                          aGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAAAAACCCGATACGGCGGGTTTTTA‑CT‑TTTGGAGTGGCAGAAAGATGAAACACTTTCGACGACACTATAAACAaaagaa                                                           >  6:654622/1‑150 (MQ=11)
                                                                                              gaatgaCTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGTTTTACGTAAAAACCCGATTCGGCGGGTTTGTA‑CT‑TTTGGAGTGCGAGAAAGATTAATCGCTTTCCCCGACACGAAACTAAaaagaaatctc                                                      >  5:1399805/1‑147 (MQ=11)
                                                                                              gaatgaCTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTGTA‑AT‑TTTGGAGGGGCAGATATATCAAAGACTTGCGCCGACACTATACCCAAAAGAAAGccc                                                      >  3:744830/1‑149 (MQ=11)
                                                                                               aatgaCTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑AT‑TTTGGAGGGGCAGAAAGATGTCAGCCTGTCCCCGACACTCGACACAAAAGAAAGCgg                                                      >  7:651910/1‑150 (MQ=11)
                                                                                                 ggccttgagaaaacacTGTCCCCCAAAGAACCCGGCTTAT‑CGGTCATTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTT‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCtt                                                   <  5:245818/139‑1 (MQ=11)
                                                                                                    cTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTGCGGCGGGTTTGTA‑CT‑TTTGGAGTGGCAGAAAGATGATTGCGTTTCGACGAGACTGTAGCCAAATGACAGCGGCTGATc                                                >  3:1254795/1‑151 (MQ=11)
                                                                                                      gTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGTTTTACGTAAAAACCCGGTTCGGCGGGTTTTTA‑AT‑TTTGGAGTGGCATAAATAGGAAACAGATTCCACGACAATAAACACAAAAGAAAGCGGATTATCgg                                              >  2:762095/1‑151 (MQ=11)
                                                                                                       tCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGATTTACGTAAAAACCCGCTGCGGCGGGTTTATC‑AT‑TTTGGAGGGGCAGAAAGAACATTCCCTGTCCGCGACACTATACACAAAAGAAAGCgcatgatcgct                                             >  2:229072/1‑141 (MQ=11)
                                                                                                        aatatacacTTTACCCTAAAGAACGGGGCTTTT‑CGGTAAGTTTTACCTGTTTTAGTTAACAACGGTCTTCTGCGGGTTTTTG‑TT‑TTTGTTGGTGCTTAATTATGAATGACTTTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTc                                            <  8:672312/146‑1 (MQ=2)
                                                                                                         cACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGATTCGGCGGGTTTTTA‑CT‑TTTGGAGTGGCATAAAGATGAATGCCTGTCGCCGAGACTAGCCCCAAAAGAAAGCGGCTTATCGGTc                                            >  1:76302/1‑150 (MQ=11)
                                                                                                          aCGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTGTA‑AT‑TTTGGAGTGGCAGAAAGATGAAACCCTGTCCACGACACTATAGAAAAAAGACAGCGCCTTAACgcaaat                                          >  3:197166/1‑146 (MQ=11)
                                                                                                           cGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGTTTTACGTAAAAAACCGGTGCGGCGGGTTTGTG‑CT‑TGTGGAGGGGGATATAGATGTGACCCATTCCACGACACGGAACGCACAAGAAAGCGCCTGATCGCTCAGt                                         >  6:730269/1‑151 (MQ=2)
                                                                                                           cGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAAAAACCCGGTGCGGCGGGTTTGTA‑CT‑TGTTGAGTGGGAGAAAGAGGAAACGCTTTCGGCGACACTCTCGCCAAAAGAAAGccaaatatcgcacagt                                         >  7:1241022/1‑136 (MQ=2)
                                                                                                            gACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAAACCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGtt                                        >  1:1614598/1‑151 (MQ=25)
                                                                                                              cacTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGTTTTACGTAAAAACCCGGTGCGGCGGGTTTATG‑CT‑TTTTGAGGGGGAGATAGAGGTGTGGGTTGCGGCGACACGAGCCCCAAAAGCAAGCGGcgtcgccggcagtgtt                                      >  3:1276323/1‑136 (MQ=2)
                                                                                                                cTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTGACCTGTTTTACGTAAAAACCCGGTGCGGCGGGTTTTTA‑CT‑TTTTGAGTGGCAGAAATAGGAAACCCTTTCCCCGACACTATCCTCAAAAGAAAGCTGATTATCGGTAAGTTTTa                                     >  1:1306645/1‑150 (MQ=11)
                                                                                                                   tttttaaaataatccGGCTAAT‑CGGTATTTTTAAACTTTTTTCCTTAATATACCGCTTCTGGTGGTTTTTA‑CT‑TTTGGAGGGGCATAAATATTAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCt                                  <  2:1632573/136‑1 (MQ=2)
                                                                                                                    accgcagcccaaccGGCGTAT‑CGGTCCGTTTCCCCTGTTTTACGTAAAAACCCGCTTCGGCGTTTTTTTT‑CT‑TTTGGAGGGGCAGAAACAAGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGa                                <  3:34420/138‑1 (MQ=11)
                                                                                                                    aCCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTTTCCACGACACTATACCCTAAAGAAAGCGGCTTATCGGTCAGTTTTaaatg                                 >  1:1168235/1‑146 (MQ=255)
                                                                                                                    aCCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGATTCGGCGGGTTTTTA‑CT‑TTTGGAGTGGCAGAAATATGAAAGACTGTCCACGACACTATAAAAAAAAGAAAGCGGATTAACGGTAAGTTTTaaatt                                 >  4:149554/1‑146 (MQ=11)
                                                                                                                     cccAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGATTCGGCGGGTTTATA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTAAACCCAAAAGACAGCGCCTTATCGGACAGTATTAACTGAt                               >  8:271570/1‑151 (MQ=11)
                                                                                                                     aacAAAAGAACCCGGCTTATGCGGAC‑GTTGCACCTG‑TTTACGGTAAAACCCCCGT‑GCGGGGTTTTTATCTGTTTGAGGGGGCCCACCCATGAAGGCCTCGCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGAt                               <  7:439842/149‑1 (MQ=2)
                                                                                                                      ccAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATCACTGTCCACGACACTATACGCAAAAGAAAGCTCCTTATCGGTCATTTTTACGTGATg                              >  3:993211/1‑151 (MQ=14)
                                                                                                                       cAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGt                             >  7:55152/1‑151 (MQ=39)
                                                                                                                        aaaaGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTACGGCGGGTTTATA‑CT‑TTTGGAGGGCCAGAAAGATGAATGACTGTCCACGACACTATAACCAAAAGCAACCGGCTTAACGCTCAGTTTTAAATGATGt                             >  2:1522075/1‑150 (MQ=11)
                                                                                                                           agaaagCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGTGGCAGAAAGATGAAACACTGTCCACGACACTATACCCAAAAGCAAGCGCCTTATCGGAAAGTTTTAAATGATGTACg                          >  4:1646812/1‑150 (MQ=14)
                                                                                                                           agaaagCGGCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAAAAACCCGATTCGGCGGGTTTTTA‑AT‑TTTTGAGTGGCAGAAAGAAGAAACACATTCCACGACACAATAAACAAAAGAAAGCAACATATCGGTAAGTATTaaaatatcaaagt                         >  6:1445563/1‑139 (MQ=2)
                                                                                                                           agaaagCGGCTTAT‑CGGTCAGTTTAACCTCATTTACGTAAAAACCCGCTTCGGCGGGTTTAAA‑CT‑TTTTGAGTGCGAGAAATAACAATCAGAGGCCCCGACACTAACCACAACAGAAACCAGCATATCGCTAAGtatataaagatgaaac                          >  8:974444/1‑135 (MQ=2)
                                                                                                                              gcagccgatctgcGGTCCGTTTCACCTGTTTTACGGAAAAACCCGGTTCGGGGTTTTTTTC‑GT‑TTTGGAGGGGCATAAAGATCAATCACTGTCCACGACCCTATACCCAAAAGAAATCGGCTTATCGGTCAGTTTTACCTGATGTACGtaa                       <  3:1492349/139‑1 (MQ=255)
                                                                                                                              aagCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACAGTCCACGACACTATACACAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGtaat                      >  6:678480/1‑151 (MQ=255)
                                                                                                                                 cGGCTTAT‑CGGTCAGTTTAACCTGATTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGTGGCAGAAAGATGAAAGACTGTCCACCACACTATAAACAAAAGAAAGCGGCATATCGCACAGTTATACATGATGAACCtaat                      >  4:950409/1‑148 (MQ=11)
                                                                                                                                  ggCTTAT‑CGGTCAGTTTCACCTGTTTTATGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAAc                  >  6:1525961/1‑151 (MQ=255)
                                                                                                                                  ggCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAAACCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGAAGAATGACTGTCCACGACACTATACCAAAAAGAAAGCGGCTTATCGCTCAGTTTTACCTGATGTACGTAATAAAc                  >  4:1117204/1‑151 (MQ=255)
                                                                                                                                  ggCTTAT‑CGGTCAGTTTAACCTGTTTTACGTAAAAACACGGTGCGGCGGGTGTTTA‑CT‑TTTGGAGGGGCAGAAAGAAGAATGACTGTCCACGAGACAATACAAAAAATAAATACTATTATAGGTCAGTATTACCTTATGAACGAAATAAAc                  >  1:1259014/1‑151 (MQ=9)
                                                                                                                                    cTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCg                >  5:635715/1‑151 (MQ=255)
                                                                                                                                    cTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCg                >  4:104949/1‑151 (MQ=255)
                                                                                                                                    cTTAT‑CGGTCAGTTTAACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTG‑AT‑TTTGGAGGGGCAGAAAGATGAAGCACTGTCCACGACACAATAACAAAAAGAAAGCGGATTATCGGTCATTTTAAAATTTTGTAAGTAATAAAcc                 >  6:568991/1‑150 (MQ=11)
                                                                                                                                     tttttttttCAGTCTCACTTGTTATACGTAAAACCCTGCTTGGGCGTGTTTTTA‑CT‑TTTTGTGGGGTACAAATATTAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAAcc                 <  7:23850/142‑1 (MQ=14)
                                                                                                                                     ttAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGATTGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGt               >  4:767745/1‑151 (MQ=255)
                                                                                                                                     attaccttcttgTTTCCCTTGTGCTACGTAAATACATTTTTCTGGGGGTTTTTA‑TT‑TTTTTAGGGGCTTAAAGTTTAATTAATTTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCg                <  8:848587/140‑1 (MQ=9)
                                                                                                                                        t‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGTTcc            >  8:398907/1‑151 (MQ=255)
                                                                                                                                           ggTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGTTCcgg          >  5:1092581/1‑151 (MQ=255)
                                                                                                                                           ggTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGTTCcgg          >  6:1567493/1‑151 (MQ=255)
                                                                                                                                             tCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGTTCcggcg        >  5:1242083/1‑151 (MQ=255)
                                                                                                                                             tCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGTTCcggcg        >  3:245789/1‑151 (MQ=255)
                                                                                                                                             tCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGTTCcggcg        >  5:960824/1‑151 (MQ=255)
                                                                                                                                             tCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGTTCcggcg        >  3:1607171/1‑151 (MQ=255)
                                                                                                                                              cAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGTTCcggcgg       >  2:582934/1‑151 (MQ=255)
                                                                                                                                              cAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAAACGTTCcggcgg       >  3:1426126/1‑151 (MQ=255)
                                                                                                                                               aGTTTCACCTGATTTACGTAAAAACCCGCTTTTGTGTTTTTTTT‑CT‑TTTGTAGGGGGAGAAATATTAATGACTGCCCACGACTCTATACCAAAAAGATATCGGGTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGTTCCGGCggg      <  2:432537/151‑1 (MQ=14)
                                                                                                                                                gTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGTTCCGGCGGGt     >  3:1575976/1‑151 (MQ=255)
                                                                                                                                                 tttCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGGACGTAATAAACCGTTCCGGCGGGtt    >  6:650437/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                       
TATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTAT‑CGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTA‑CT‑TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTTACCTGATGTACGTAATAAACCGTTCCGGCGGGTTTC  >  DH1/613623‑613919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑