| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 2,169,720 | 0 | C | G | 27.2% | 196.5 / 45.0 | 160 | E614Q (GAA→CAA) | rsxC | electron transporter RsxC |
| Reads supporting (aligned to +/- strand): ref base C (73/37); new base G (36/5); total (116/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.30e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 176 total aligned reads displayed.
GGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGC > DH1/2169574‑2169870 | ggCTCTGGCAATAGCCGCTTCCACGGCCGCTTTGCGCTGATCGACCTGTTGTTCTGGAACGGCATTAGCCTGTTGCTGTTCCAGCTTTCGTGCTTTG‑GCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTtcttct < 5:483160/151‑1 (MQ=14)cgcgcGGGCAATAGCGGCTTCCACGGCGGCGTTGCGAGGCGCGACCTGTTCTTCTGCCTCGGCATTAGCCTGTTGCTGTTCCCGCGTGCGTGCTTTG‑GCGCGGGCAATAGCCGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTtcttct < 7:125347/147‑1 (MQ=14) gcgcGGGCAATAGCGGCGGCAACGGCCGCTGTTCGCGTATCGACTTGTTTTTATGGCTCGGCATTATCCTGTTGCTGTTCCTGTTTTCGTGCTTTT‑GCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTtcttct < 8:409305/147‑1 (MQ=14) tCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGACCTGTTGTTCTGGGTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTG‑GCTCTGGCTATAGCGGCTTCAACGGAAGATTTACGGGGATCGGCCTGGGGTTCTggg > 8:581609/1‑150 (MQ=11) gtcAATAGCCGCGGCGACGGCGGCTGTGCTATGAGTGAACTGGTGTTCTGGCTCGGCATTAGCCTGCTGCTGGTCGCGGTTTCTGGCGTTC‑GCTCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTcc < 3:599676/149‑1 (MQ=9) cgacccgcggccaCGGCCGCTTTGCTTTTATCAACGTTTTGTGGTGGATCGTCATTTGCATTTTGCGGTTCCAGCTTTCGTTCTTTG‑GCTCTGTTAATATCTGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCAt < 2:824496/139‑1 (MQ=255) aGCGGCTTCTACTGCCGCGTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTC‑GCTCGGGCAATAGCCGCTTCGACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCAtt < 4:1106286/150‑1 (MQ=11) aGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCAtt < 3:534451/150‑1 (MQ=40) cTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCTGCTTCGACGGCGGGTTTACGAGGATCCGCATGTTGTGCTGGTTCCGGATTATCCTg > 3:201120/1‑151 (MQ=11) ttCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTACGAGGATCCGCCTCGTGTGCTGGGTCCGAATTATCCTgg > 3:720224/1‑150 (MQ=11) tgctggcggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTG‑GCACGGGCAATAGCGGCTTCTACGGCAGATTTACGAGGATCTCCATGTTATTCTGCTTCCGAAttttgctgatt > 8:1361698/5‑142 (MQ=11) gACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGGCCAGGGTTTCTGCGTCCTGATTATCCTGtagt > 5:1473236/1‑148 (MQ=11) gcggcTTTGCGCGGATCGACCTGTTTTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGtt < 8:660610/151‑1 (MQ=38) ggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCGATAGCTGCTTCGACGGCGGGTTTGCGCGGATCGCCATCTGGTTCTGGTTCGGAAGTATCCTGTTGCTGTTcc > 7:676978/1‑151 (MQ=11) gATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACCAGTTATTCTGGTTCCGCAGTAGCCTGATGCTCTTCCAGCTTgcgac > 2:278260/1‑148 (MQ=14) tCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTG‑GCACGGGCAATAGCTGCTTCGACGGCGGATTTGCGGGGATCACCAAGGGGTGCTGCTTCCGGAGTTTCCTGATGGTGTTCCAGCTTgccacggg > 8:1392135/1‑145 (MQ=2) cgaagacctgttCGGGCTCGTCATCACCCTTCTGCGGGTCGCGCTTTCTGGCGTTC‑GCTCGGGCAATAGCCGCGGCCACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCttt < 7:898191/143‑1 (MQ=2) cGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTG‑GCGCGGGCAATAGCGGCTTCCACGGCGGGTTTGCGGGGATCGGCATGGTGTTCTGGTTCGGGAGTATCCTGTAGATGTTCCAGATTccgacgttt > 1:1214400/1‑145 (MQ=11) gACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTG‑GAACGGGAAATAGAGGCTTCGACGGAGGCTTTGCGAGGATCGCCCTGTTATTCTCGTTCCGCATTAGCCTGTTGCTGTTCGAGCTTgcgcggggtg > 8:96138/1‑146 (MQ=14) aactagcagttCTTGGTCGGTATTAGCCTTGTGCTGGGCGGGTTTGCGGGCTTTG‑GCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTg < 6:101613/143‑1 (MQ=11) ccTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGc > 8:376422/1‑151 (MQ=40) ttgtagtTCTGGCTCGTTTTTATCCTGTTGCTGTGCGTGGTTGTTGGCTTTT‑GCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGc < 6:243353/149‑1 (MQ=11) cacctgttCTGCCTCGGGATGAGCCTGGTGCTGGTCGCGGTTTCTGGCCTGC‑GCGCGGGCAATAGCCGCGGCTACGGCCGCTTTGCGCGGATCCACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCa < 3:1322570/147‑1 (MQ=2) cTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCCACCACTTGTTCTGGTTCCTGAGTATCCTGTAGATCTTCCAGATTccgagtttattcc > 8:1037612/1‑141 (MQ=11) tgttgtTCTGGGTCGTGTTTAGCCTGGTGCTGGGCGTGGTTGGGGGCGTTG‑GCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCa < 6:484092/150‑1 (MQ=11) ccgactcgctccccATCAGCCTGTGGCTGTTCCAGCTTTCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACTGCTGCTTTGCGCGGATCTACCTCCTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACggg < 6:755681/138‑1 (MQ=11) caccgCAGTAGCCTGTTGCTGATGGAGCGGGCGAGCTTTG‑CCACGGCCAATAGCCGCTTCGACGTATGCTTTGCGGTGTTGCTTCTGATCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCg < 4:355968/147‑1 (MQ=2) gcGGCATTAGCGGGAGGCTGATCCCGCTTCCGCGCTTGC‑GCCCGGGGACTCGAGGGCTCCCCGGCGGTCTTGCGATGATCCACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCgg < 3:453450/150‑1 (MQ=2) gcccgaGCCTGTGGCTGTTCCAGCTTGCTTTTTTTGTGTATTGG‑AATAGCCGCTTCTTCTGCAGATTTGGGCGGATATACTTGTTCTTCTTGGTGCTTAGTATCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCtt < 8:801013/146‑1 (MQ=9) gCATTAGCCTGTTGCTGTTGGAGCTTGCGTGCTTTG‑GCTCGTGCAATAGCGGCTTCGACGGCTGCTTTGCGGTGATCCTGCTGATCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCtt < 8:624828/151‑1 (MQ=14) ggacgaggTTGCTGTTTCAGGTGGCGGGCGTTG‑TGTCGGGGAATCGGCCGTTCTACCGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGa < 1:818684/144‑1 (MQ=2) ttGCTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCCGATCGCCCGCGGCCACTGCTTCCCCACAAGCCCCTTCCTCTACCCGCTAGCGCGCGTTCGCCCGGGCAAAACCGGCTGCCCCggcggcg > 3:776172/1‑150 (MQ=2) cTGTTCCAGCTTGCGTGCTTTG‑GCCCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAg < 3:1517311/105‑1 (MQ=255) cTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCCGCCTCTTGTTCTGGTTCCGCATTAGCCTGTTGATGTTCCAGCTTGCGCGCTTTGGCGCGGGCCATAGCGGCTTCCACGGCGGGtttc > 1:493909/1‑150 (MQ=11) cTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGAATTATCCTGTTGATGTTCCAGATTGCGGGCTTTGGCCCGGGCAATAGCTGCTTCTAAGGCCGCtt > 5:1195113/1‑149 (MQ=11) cTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTg > 3:1653984/1‑151 (MQ=255) gTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTCTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCCCTTTGGCCCGGGCAATAGCTGCTTCTCCGGCGGGTTTtcg > 5:463337/1‑151 (MQ=11) gTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCCGCCAGTGCTGCTGGGTCCGCATTATGCTGTTGCTGTGCCAGCTTGCGGGGGTAGGCCCGGGGAATCGCTGCGCCGCcggcactatttcg > 5:34872/1‑142 (MQ=2) ttCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCATGTTCTTCTGGTTCCGGATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTGTGGCCCCGTCAATAGCTGCTGCGCCGGCAGTTTTtcgc > 7:1411182/1‑151 (MQ=11) tCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCTATAGCGGCTTCTAcggcggagttacggg > 7:392738/1‑142 (MQ=11) ttGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGGTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTGTGGCCCGGGGAATAGCTGCGTCTCCGGCTTCttttggacgct > 1:820142/1‑140 (MQ=11) tGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTATCCTGTTGCTGTTCCAGATTGCGCGGTTTGGCCCGGGCAATAGCTTCTTCTCCGGCGGGTTTTCGAGGATCggc > 8:461109/1‑149 (MQ=11) gCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGATCGCCCTGTTGTTCTGGTTCCTCATTAGCCTGTTGGTGTTCCAGCTTGCGCGGTTTGGCCCGTGAAATAGCTGCTTCTACGTCGGCTTTgcgccgctctga > 7:1270764/1‑142 (MQ=11) cGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACCt > 4:834033/1‑151 (MQ=255) cGTGCTTTG‑GCACCGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGCATCCGCATTAGCCTGTTGCTCTTCCAGCTTGCGCGCTTTGGCACGGGCAATACCGGCTTAGACGGCGGCTATGCGAGGATCCAca > 6:474263/1‑149 (MQ=11) gTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCTGCTTCGCCGGCAGTTTTGCGAGGATcatcatg > 7:1572118/1‑145 (MQ=11) cccctcccccACGCGCAACAGCTCCTTCGACGGCCGCTTTGCTTTTATTTACTTTTTCTTCTCGCTCCGCATTATCCTGTTCCTGTTACAGTTTTTTCGCTTTCGGACGGGCTATAGATGATTCGACGGCTGCTTTGCGCGGATCGACCtg < 8:920065/142‑1 (MQ=2) cagcgtctgcccgtccAAGAGCCGCTTCGCCGCTCGCTTTGCGCGGATCTACTTGTTTTTCTTGTTCCGCATTAGCCTGTTTCTGTTCCATCTTGCGTGCTTTTTCCCGTTCAATAGGGGCTTCGACGGCGGCTTTGCGCGGATCGACCtg < 8:151102/136‑1 (MQ=2) ggctgggccACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGGTCCGCATTAGCCTGTTGCTGTTCCCGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgt < 3:272591/143‑1 (MQ=255) cTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGGccgggtg > 8:890526/1‑146 (MQ=14) gg‑gCCCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCGTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTc < 5:271784/150‑1 (MQ=255) gCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGGCCTGGGGTTCTg > 3:803403/1‑151 (MQ=255) cACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTGCGACGGCCGCTTTGCGCCGATCCACCTGGGGTTCTgg > 1:1594076/1‑151 (MQ=14) cAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTTCGCGGATCGCCCTGGGGTTCTGGTTcctg > 5:870824/1‑149 (MQ=14) cAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCAGATTTACGAGGATCAACCTGGGGTTCTgcgtcggg > 6:1457502/1‑144 (MQ=11) aaTAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTgcgc > 3:1411531/1‑82 (MQ=33) aGCGGCTTCGCCGTCGGCTTTGCGCTGATCGTGATGTTATTGTGGAGCGGGTGTATCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTa < 7:1422067/151‑1 (MQ=11) gCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGAAATAGCTGCTTCTACGGCAGTTTTGCGAGGATCAGCCGGGGGTTCTggggcgtgattat > 4:1185954/1‑140 (MQ=11) cGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGAGGATCGCCCTGTTTTTCTGGTTCCTGATTatc > 7:1372796/1‑149 (MQ=14) gCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCTGCTTCTACGGCAGATTTGCGAGGATCGACCTGTTGTTCTgcgtcctgagtatcct > 6:1479568/1‑136 (MQ=14) gCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTCCGGGGATGACCCGGTGGTGAGGGTTCCGCATTGGCCt > 4:334987/1‑151 (MQ=14) ttCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCGGCTTCGACGGCTGGTTTGCGAGGATCCGCAAGTGGTTCTGCTTCCGTATTATCCTGt > 3:426427/1‑151 (MQ=11) ttCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATCGGCCTGTTGTTCTGCTTcgtgagtatgctgt > 5:622076/1‑138 (MQ=14) ttCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGCCATGTTGTTCTGGTTCGGGATTAGCCTGt > 7:181115/1‑151 (MQ=255) tCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTGCGGGGATCGCCCTGTTGTGCTGGTTCCGCATTATGCTGtt > 8:1443175/1‑151 (MQ=14) gccagcgcggcTTTGCGCGTATCAAGCTGTGGTTCTGGATCCTCATTACCCTGCTGCTGGTCCCGCTTGCTGGCTTTCGCGCGGGCAATAGCCGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTg < 7:958270/143‑1 (MQ=11) gACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCGATAGCTGCTTCGACGGCGGGTTTGCGTGGATCGCCAAGTTTTTCTGGTTcctgattttgctgttgt > 5:1666135/1‑136 (MQ=11) ggcggcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCAACGGCAGATTTACGACGATCAACATCTATTTCTGCTTCCTAATTATCCTgaacatct > 6:828477/1‑144 (MQ=11) gcggcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTGCGAGGATCCACAAGTTGTTCTGGTTCGGGATTATCCTGTTgatctt > 6:1585982/1‑146 (MQ=14) gcggcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCAACGGCAGATTTACGAGGATCAACAACTTTTTCTGCTTCCTAATTATCCTgaagatctt > 8:1158259/1‑143 (MQ=11) ctgcTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTgc < 2:920386/61‑1 (MQ=255) cggcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCAGCTTTGCGAGGATCCCCATGTGGTTCTGGTTCCGCATTATCCTGTTGATGTTc > 7:1617218/1‑151 (MQ=14) agcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTg < 7:1504416/60‑1 (MQ=21) gcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCTATAGCTGCTTCTACGGCAGATTTACGAGGATCTGCATGTTGTTCTGCTTCCTGATTTTCCTGTTGTTGTTcc > 2:967599/1‑150 (MQ=11) gcTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTcc > 1:1100970/1‑150 (MQ=255) cTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCTGCTTCAACGGCAGATTTACGAGGATCACCAACTTGTGCTGCTTCCGGAGTATCCTGATGGTCTTcc > 8:838400/1‑149 (MQ=2) tttGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTCCGGGGATCGCCATCTGGTGCTGGGTCCTTATTATCCTGATGTTCTGCCAgt > 1:388555/1‑150 (MQ=11) tttGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGGCCTGTTGTGCTGGTTCCGCATTATCCTGTTGGTGTTCCAGc > 7:1458474/1‑151 (MQ=255) ttGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGAGGATCGCCATGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCt > 7:857737/1‑151 (MQ=255) cgcgGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGAGGATCGACCTCTTTTTCTGGTTCCGGATTAGCCTGTTGCTCTTCCAGATTgc > 5:1402256/1‑151 (MQ=14) cgcgGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCAGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTgc > 1:351760/1‑151 (MQ=255) cccgcaTCGACGCGCTCTCCTGGATCCGCATTAGCCTGTTGCTTTTTTTTATTTCTAGCTTTCGCACGGCCATTATCTGCTTGGTCGTCTTCTTTTCGCTTATCGACGTTTTTATGTTGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTgc < 8:352480/146‑1 (MQ=2) gATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTgcgcgc > 7:361116/1‑151 (MQ=40) gATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCCACGGCCGCTTTGCGAGGATCGGCCAGGGTTTCTGGTTCCTGATTATCCTGTAGGTGTTCCAGATTccg > 5:959614/1‑148 (MQ=14) aTCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTATCCTGTTGGTCTTCCAGCTTgcgcgat > 8:419500/1‑149 (MQ=14) aTCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGGGGTTCTGGTTCCGAATTATCCTGTTGGTGTTCCAGGTTgcgcctt > 3:716398/1‑148 (MQ=14) tCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCAGGTTTGCGCGGATCGCCCTGTTGTTCTGCTTCCGCATTATCCTGTTGGTGTTCCAGCTTCCGCGCtt > 6:1567503/1‑151 (MQ=14) cGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGGTGTTCTGGTTCCGCATTATCCTGTAGATCTGCCAGCttcccacattg > 6:348345/1‑142 (MQ=14) cGACCTCTTCTTCTAGTTCCGCATTAGCCTGTTGATGTTAAAGCTAGCGCGCTTTGGCACGGGCAATAGCTGCTTCAACGGCGGATTTCAGAGGATCAGCATCTTTTTCTGCTTACTGATTAGCCTGATCATCTTCCAGAttcaaacattt > 4:222470/1‑142 (MQ=255) gACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTATCCTGTTGCTGTTCCAGCTTGCGCGCTTTg > 7:885728/1‑151 (MQ=255) gACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCATGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGATTGCGCGCtttt > 1:366918/1‑150 (MQ=255) gACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACCTGTTGTTCTGGTTCCGGATTAGCCTGTTGATGTTCCAGATTCCGCGAtttt > 2:339365/1‑150 (MQ=14) aCCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGAGGATCGACAAGTGGTTCTGGTTCGGCAGTTTGCTGTTGGTGTTCCAGCTTgcggcgttgtg > 4:1451453/1‑143 (MQ=14) ccTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCTGCTTCAACGGCGGGTTTGCGAGGATCGCCATGTTTTTCTGGTTCCGGAGTATCCTGTAGATCTTCCAGCTTGCGCGCTTTgtc > 3:1461881/1‑149 (MQ=14) ccTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGgc > 7:639074/1‑151 (MQ=40) cTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCAGATTTGCGAGGATCGACATCTTGTTCTGCTTCCTGATTATCCTGAAGGTCTTCCAGCttcccacattattcc > 2:1463389/1‑138 (MQ=14) ttcttcTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCGATAGCGGCTTCCACGGCGGGTTTACGGGGATCCCCCAGGGGTGCTGGGTCGGAAGTATCCTGAAGATGTGCCAGCTTgcgcggggtggcccgg > 2:1370424/1‑140 (MQ=2) tcttctGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCAACGGCGGATTTTCGAGGATCGCCCTCTGTTTCTGGTTCCGAATTATCCTGATGATCTTCCAGATTCCGAGATTAGGCGCggg > 2:568544/1‑151 (MQ=14) gcttctGGTTTTTGATTAGCCGCTTGCTGTTCCAGCTTGCGCTATAGGGCACGGGATATCTCGGGTGCGATGGCGGGATCTCGCGGATCTACCTGTTGTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCggg < 7:60565/150‑1 (MQ=2) cttctGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGGCCTGTTGTTCTGGTTCCGCATTATCCTGTTGCTGTTCCAGCTTGCGAGATTTGGCGCggtg > 1:1032818/1‑149 (MQ=255) | GGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTG‑GCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGC > DH1/2169574‑2169870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |