Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5770TG27.3% 315.9 / 60.7 247R661R (CGA→CGC) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base T (35/138);  new base G (6/59);  total (48/199)
Fisher's exact test for biased strand distribution p-value = 5.37e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 252 total aligned reads displayed.

CTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGG  >  DH1/2169427‑2169726
                                                                                                                                                      |                                                                                                                                                      
cTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGAGCGCATCACCCTCGTCTTCTGGCTCCGCATTACACGCTTGCTGTTCCAATTTCCGCGCTTTGGCt                                                                                                                                                        >  3:723274/1‑151 (MQ=17)
  gTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCt                                                                                                                                                        <  3:774844/149‑1 (MQ=255)
  gTTCTTCTGGTACCGCATTAGCCTGTTGCTGGTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTc                                                                                                                                                       <  3:1075693/150‑1 (MQ=255)
   ttcttcTGGTTCCTCATTATTCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCg                                                                                                                                                      <  6:1267559/150‑1 (MQ=37)
    tcttctGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCgg                                                                                                                                                     <  8:631817/150‑1 (MQ=255)
    ccttctGGCACCGCATCACCCTGCTGCGGTTCCCCCTTGCGGGCTTGGGCGCGGGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCgg                                                                                                                                                     <  6:1745131/149‑1 (MQ=21)
       tctGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCa                                                                                                                                                  <  3:597252/150‑1 (MQ=255)
       tctGGGACCGGATTAGCCTGTTGCTGGTCCCGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCa                                                                                                                                                  <  1:545899/150‑1 (MQ=255)
       tctGGCACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCggg                                                                                                                                                    <  7:1448383/148‑1 (MQ=255)
          ggtcggggaTTACCCTGTTGCTGTTCCGGGTTGGGTGCTTTGGCGCGTGCAATAGCCGCGTCCACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAAt                                                                                                                                                <  5:468796/141‑1 (MQ=17)
          ggTACCTCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCaa                                                                                                                                                 <  4:764141/148‑1 (MQ=255)
          ggTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATa                                                                                                                                               <  5:984750/150‑1 (MQ=255)
          ggTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTGCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCaa                                                                                                                                                 <  2:1311214/148‑1 (MQ=255)
          ggTACCGCATTAGCCTGTTGCTGGTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCaa                                                                                                                                                 <  2:1493773/148‑1 (MQ=255)
           gTACCGCAATACCCTGTTGCTGCTCCCGCTTTCGTGCTTTCGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTCCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGc                                                                                                                                             <  6:339874/151‑1 (MQ=25)
               ggCATTAGCCTGTTGCTGTTCGTGCTTGGGGGCTTTGGCGCGTGCAATAGGCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCt                                                                                                                                         <  2:1551029/150‑1 (MQ=255)
                  aTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                                      <  7:663511/151‑1 (MQ=255)
                    tAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCATCTTTGCGCGGAGCTAGATGTTATTCTGGGTCCGCATTAGGCTGTTGATGTTCGAGGTTGGGAGCTTTAAAACGGGCAATAGCGGCTTCGAc                                                                                                                                    >  6:393237/1‑151 (MQ=11)
                    tAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                                    >  3:1831883/1‑151 (MQ=255)
                     aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcg                                                                                                                                   <  5:1338449/151‑1 (MQ=255)
                     aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCACATCGAAAGCGCCTGTTCGAGGGTAAAACTGTTCATCTATGTGGTCATTAGCCTGTTGGTGTTAACATTTAAAAAATTTGGCGCGGGGAATAGCggggtcggcg                                                                                                                                   >  4:1600186/1‑143 (MQ=2)
                     aGCCTGTTGCTGTGCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTGCCACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                                    <  3:818050/150‑1 (MQ=255)
                      gCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcgg                                                                                                                                  <  3:481578/151‑1 (MQ=255)
                       cctggtgcggggccAGCTTGCGGGCGTTGGCGCGGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                                 <  7:1266563/139‑1 (MQ=17)
                       ccTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                                 <  4:1523803/151‑1 (MQ=255)
                       ccTGGTGCTGTTCCAGCTTGCGTGCGTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                                 <  3:454581/151‑1 (MQ=255)
                        cTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCGATAGCGGCTTCGACGGCAGGTTTGCGGGGATCAGCCAGGGTTTCTGGGTCCTGATTATGCTGTTGTTGTTCCAGTTTGCGAGGTTGGTCGCGGGGAAGATCGGATTCGAccacg                                                                                                                                >  1:1654320/1‑147 (MQ=2)
                         tGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGATTTACGAGGATCACCAAGTGGTTCTGGGTCCTGATTTGCCTGTTGCTGTTCCAGTTTGCGGGGTTTGTCAAGGGAAATAGCTCCTTCAAcggc                                                                                                                                 >  4:362820/1‑149 (MQ=2)
                          ggtGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcgg                                                                                                                               <  1:1768272/148‑1 (MQ=255)
                          ggtGCTGTGCCTGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcgg                                                                                                                               <  2:1621573/148‑1 (MQ=255)
                             gCTGGTCCTGCTTGCGGGCTTTCGCGCGGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                           <  4:948930/151‑1 (MQ=17)
                               tGTTGCATCTTGCGTGATTTGGAGATTGCTATAGACTCTTCGACTGCAGGTTTGGGATGATCTATCTGTTCTTCTGGGTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg                                                                                                                          <  4:725703/150‑1 (MQ=17)
                                  gccAGCTTGCGGGCTTTCGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGGTCTTCTGGCTCCGCATTAGCCGGTTGCTGTGCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg                                                                                                                      <  3:1785656/150‑1 (MQ=255)
                                    cAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTCTTCTGGGTCCGCATTATCGGGTTCGGGTTCCGGTTTGCGCGCGTGGGATCCGGCAATAGCGGCTGCGCGGGCGGCTTTGCTCgg                                                                                                                     >  5:739548/1‑150 (MQ=14)
                                     cgCTTGCGTGCGTTCGCGCGTGCAATAGCCGCGGCGACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                   <  1:968979/150‑1 (MQ=255)
                                     cgCTTGCGGGCGTTGGCGCGGGCAATAGCCGCTGCGACCGCCGCTGTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                                   <  1:1363723/150‑1 (MQ=14)
                                      gcttgcttgcttTGGCGGGTGCAATAGCCGCTTCGTCGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                                  <  3:1278705/151‑1 (MQ=255)
                                      gCTTGCGTGCTTTTGCGCGTGCAATAGCCGCTTCTACTGGAGCTTTGCGCTGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                                  <  2:947628/151‑1 (MQ=255)
                                      gCTTGCGGGCTTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                                  <  6:831096/151‑1 (MQ=255)
                                      gCTTGCGGGCTTGGGCGCGGGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                                  <  6:619316/151‑1 (MQ=255)
                                           cGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                                             <  1:908458/151‑1 (MQ=255)
                                            gTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGGGCTTTGGCTGGGGGGATGGGGGCTGGGCGGCCCGCGTTGCGCCGAGCGACCtg                                                                                                            >  5:811022/1‑151 (MQ=18)
                                            gTGCCTTGGCGCGGGCAATAGCCGCGTCCACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtg                                                                                                            <  1:183278/151‑1 (MQ=255)
                                                gcgcgcccgggCAATAGGGGATTCGACGGCAGCGTTCATCGGATCTAGCTGTACTTCAGGGTCGTGATTAGGCGGGGGCTTCGGAAGTTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttg‑t                                                                                                       <  5:1828877/141‑1 (MQ=2)
                                                  tGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGGTTGCGAGCTTTGGCTAGAGCAAAAGCGCCTACTCCAGCGGATTAGAGAGCATCGACCTGTTG‑TTc                                                                                                     >  2:773221/1‑151 (MQ=18)
                                                     cgcgTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTgg                                                                                                  <  5:380632/151‑1 (MQ=255)
                                                      gctgggaaTTGCCGCGTCTACGGCAGCTTTGCGCGGATCAAGATGTTCTTCTGGTACCGGATTAGCCTGTTGCTGTTCGAGTTTGCGGGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTG‑TTCTGGc                                                                                                 <  2:206693/145‑1 (MQ=11)
                                                          gCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCgg                                                                                             <  5:570653/151‑1 (MQ=255)
                                                          ccacgcgccgccGCGCCGGCCGCTTTGCGCGGATCTATTTTTTCTTCTGCCTCCGCATTAGCATTTTTCTGTTACATCTTTCTTGCTTTGGCTCGTGCAATATCTTCTGATATTGCGGCTTTGCGCGGATCGACCTGTTC‑TTCTGGTTccg                                                                                             <  4:532470/145‑3 (MQ=2)
                                                           cAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGGTTGCGCGCTTTGGCGCGGGCAATAGATGCTTCAACGGCAGATTTGCGGGGATAGAGCGGTTG‑TGCTGCGTCggg                                                                                            >  2:826472/1‑150 (MQ=11)
                                                             aTAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCAt                                                                                          <  1:1205317/151‑1 (MQ=255)
                                                              tAGCCGCGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGAGCTAGGAATAGCGTCTTCTACGGCACCATTGAGCGGATATAACTATAG‑TTCTgggtgcgcagt                                                                                         >  6:712487/1‑142 (MQ=12)
                                                               cgCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTa                                                                                        <  7:1154797/150‑1 (MQ=255)
                                                                     gtccaccgccgcgttGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGGTTGCGCGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGt                                                                                  <  8:1208474/138‑1 (MQ=14)
                                                                       cGACGGCAGCTTTGCGCGGATCGACCTGTTCTTCTGGATCCGCATTATCGGATTGGAGTACACGATTGAAAGCTTTTGCACGTAAATTAGCGTCTACGTCGTCGGCTTTTCAATTATATAAATGTTG‑TTCTGGGTCGGCATGAGcgggtgg                                                                                >  4:272620/1‑145 (MQ=2)
                                                                          atgCAGATTTGGGAGGATCTACGTGTTGTTCTGGCTCCGGATTAGCCTGTTGCTGTTCCGGTTTGCTGGCTTTTGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTg                                                                             <  8:812765/149‑1 (MQ=14)
                                                                            gccgCTTTGCTCTTATTAAACTGTTCTTCTGCCCCCGCATTAGCCGTTTTCTCTTCCCGTTTGTGCGCTTTCGGTCGGGCTATAGAGGCTTCTACTGCCGCTTTGCGCGGATCCACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGtt                                                                           <  2:1487917/148‑1 (MQ=255)
                                                                             cAGCTTTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTc                                                                          <  8:105839/151‑1 (MQ=255)
                                                                              cgCTTTGCTAGTATTAACCTGTTCTTCTTGCACTTCATTAGGCTGTTGCTCTTTGGGTTTTCTGGCCTTTGCGCGGGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTcc                                                                         <  2:235976/150‑1 (MQ=2)
                                                                              cgCTGTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCGGTTTTCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTcc                                                                         <  3:540248/150‑1 (MQ=14)
                                                                              aGCTTTGCGCGTAGCTACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCGGGTTTGCGCGCGTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTcc                                                                         <  7:882427/151‑1 (MQ=14)
                                                                                  ttGCGCTGATCAACCTGTTATTCTGGCTGCCCATTAGCCGGTTGCTGTTCCGCTCTGCGGGCGTGCGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAg                                                                       <  3:358799/149‑1 (MQ=14)
                                                                                    gcgcTGAGCAACCTGATGTTCTGGCTCCGGATTAGCCTGGTGCTGTTCGCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTGCTACTGCGGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTg                                                                   <  8:1782356/151‑1 (MQ=14)
                                                                                      tctgttaaacgttttcttcTGTCTCCGCTTTTGCGTGTTGCTGGTCGGGTTTTTTGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGc                                                                  <  6:1141970/137‑1 (MQ=2)
                                                                                          aTCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACATGTGG‑TTCTGGCTCGGCATTTGCCTGATGCTGTTACAGCTTGAGCGCt                                                             >  7:1635600/1‑151 (MQ=14)
                                                                                             aaCCTGTTCTTCTGTCTCCGCATTAGCGTGTTGCTGTTGCCGTTTGGGGGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTg                                                          <  8:387265/151‑1 (MQ=14)
                                                                                                  tagcttctGGCTCCGCATGAGCCTTCTGCTGGGCGCCTTTGCTCGCGTTGGCGCGGGCAATAGCCGCGTCTACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCa                                                       <  7:522617/146‑1 (MQ=14)
                                                                                                  ggtgttatGGCTCGTCTTTAGCCTTTTGCTGTTCGGGTTTTCTGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCAc                                                      <  8:1360454/143‑1 (MQ=11)
                                                                                                  gcagttctTGCTCCGCTTTACCCTTGTGCTGGTCGGGTTTGTTGGCGTGTGCGCGGGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCa                                                       <  2:1443169/145‑1 (MQ=2)
                                                                                                  gTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGATTGCGCGCTTTTGCACTCGAAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTAG‑TTCTGGGTCCGCATTCGCCTGTTGCTGGTCGGGCGTGCGGGCGTGGGCACg                                                     >  5:547288/1‑151 (MQ=11)
                                                                                                     ggtctcggtcgggcttAGCCGGTTGCTGGGCGGCTTTTCGGGCGTGCGCGCGGGCAATAGCCGCTTCGACTGCGGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc                                                  <  1:348511/137‑1 (MQ=14)
                                                                                                      ttctGGCTCGGTATTAGCCTGTTGCTGTTCGCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc                                                  <  2:623374/150‑1 (MQ=14)
                                                                                                         gggCTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGCGCTGTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa                                              <  1:621723/150‑1 (MQ=255)
                                                                                                          ggctcgtgaTTAGCCTTTTGCTGTTCGCGTTTGCGGGCTTGCGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCaa                                                <  4:1240786/140‑1 (MQ=14)
                                                                                                              cctcattatcctcgtGCTGTTCGCTTTTGCTAGCTTTGGCTCTTGCTATAGCCGCTTCTACGGCCGCTTTGCGCGGATCTACCTGTTC‑TTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGc                                         <  6:964150/137‑1 (MQ=11)
                                                                                                               cGCATTAGCCTGGTGCTGGTCGCGTTTGCTGGCTTTGGCGCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCt                                        <  3:355696/151‑1 (MQ=11)
                                                                                                                 cATTTGGCGGTTGCTGTTCTAGTTTTCGAGCTTTTGTGTTTGCTATATCGTCTTTGTGGGGTGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt                                       <  6:1460383/150‑1 (MQ=9)
                                                                                                                  atgaGCCTGGTGCTGGTCGCGTTTGCGCGCGTTGGCGCGGGCAATAGCCGCGGCCACGGCCGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                     <  1:700264/148‑1 (MQ=14)
                                                                                                                  aTTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCGATAGCTGCTTCGACCTCGGATTAGCGCCCGTCTGCC‑GTTGAGTCACGTTCAGAATTAGCCTGTTGCTGGTACAGCTTGCAACATTTGGCGCgggggctcgcggcggcg                                     >  5:1041496/1‑137 (MQ=255)
                                                                                                                     cgcctgctGCTGGTCCCGGTTGCGCGCCTGCGCGCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg                                  <  1:1481062/144‑1 (MQ=14)
                                                                                                                     cgCCGGTTGCTGGGCGGCTTTGCGGGCGTTCGCTCGGGCAATAGCGGCTGCCACTGCCGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc                                   <  3:1235588/149‑1 (MQ=14)
                                                                                                                     accctggtGCTGGTCCGGTTTGCGCGCGTGGGCTCTGGCAATAGCGGCTTCCACTGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg                                  <  7:1119529/144‑1 (MQ=14)
                                                                                                                     aGCCTGCTGCTGTGCCGGTTTGCTCGCGTGGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc                                   <  5:905826/150‑1 (MQ=14)
                                                                                                                      ccctggtGCTGTTCCGGGTTGCTGGCGTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcgg                                 <  1:468180/145‑1 (MQ=11)
                                                                                                                       cctggtGCTGTGCCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                                <  7:326914/146‑1 (MQ=255)
                                                                                                                         ggTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGGTTTGGCACGGGCAAGCGCGGCTGCGAcggcgg                              >  7:103027/1‑151 (MQ=255)
                                                                                                                          gtggCTGGTCCAGATTGCGGGCTTTGGGTCGTGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc                             <  5:1432275/148‑1 (MQ=14)
                                                                                                                             ggtGTTCCCGATTGCGCGGTTTGGCTCGTGCAATAGCGGGTTCGCCGGGCTGTTTGCGCGGATCCAGCTCTTC‑TTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCtt                           <  1:1037271/148‑1 (MQ=11)
                                                                                                                             gCTGTTCCCGTTTGGGGGCTTTTGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCCACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCtt                           <  3:995292/150‑1 (MQ=255)
                                                                                                                               tGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGATTTGCGAGGATAGAGCTGATG‑ATCTGCGTCGGCATTAGCATGTTGCTGTTAAATCTTGCGATCTTTGGACCGGGAAATAGATGCTTCAACGGCAGGTTTgc                        >  6:1459556/1‑151 (MQ=255)
                                                                                                                               tGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGCCTTCGACGCCGCCTTTGCGCGGATCGCACTGTTG‑TTCTGGTTCGGCATTAGCATGTTGCTGTTAAAGATAGCGCGCTTTGGCGCGGGCCATAGCGCGGTCGAcgcccggtgtgc                        >  3:1497686/1‑141 (MQ=255)
                                                                                                                                gttcgtgtttttttgcTTTTGCGCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                       <  8:1115856/137‑1 (MQ=11)
                                                                                                                                 gtccaggtggcgtgcgtTGGCGCGTGCACTTGCGTCGTCGCCGGCTGCGATCTGCGGATCAACCTGTTC‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGCCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc                      <  5:1625302/142‑1 (MQ=2)
                                                                                                                                 ggcgcctttGCGGGCGTTTGCGCGGGCAATAGCCGCGGCTACTGCCGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc                      <  7:249558/145‑1 (MQ=14)
                                                                                                                                  cgccgctcgcgcgcTCTCGCGCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCCACCTGTTC‑TTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                       <  6:883953/141‑1 (MQ=11)
                                                                                                                                   ccccTTTGCTCGCGTGCGCGCGGGCAATAGCGGCTGCCACGGCCGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCACGTGCAATAGCGGCTTCGACGGCGGCTTTGCGCgg                    <  7:211834/151‑1 (MQ=11)
                                                                                                                                   agaggttGCGCGCTTTGTCTAGGGCAATAGCGGCTTCGACGGCGGATTTGCTCGGATCTACCTGTTC‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg                     <  8:64730/145‑1 (MQ=14)
                                                                                                                                     cGTTTTCGGGCGTTCGCTCGGGCAATAGCCGCTTCGACTGCGGCTTTGCGCGGATCTACCTGTTG‑TTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                  <  7:748737/151‑1 (MQ=14)
                                                                                                                                      gTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                 <  3:921023/151‑1 (MQ=255)
                                                                                                                                            gcgcGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTg           <  3:1511930/151‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
CTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTG‑TTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGG  >  DH1/2169427‑2169726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑