Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,6160GT27.4% 227.8 / 26.7 183V648V (GTC→GTA) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base G (39/80);  new base T (4/41);  total (48/135)
Fisher's exact test for biased strand distribution p-value = 1.41e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 186 total aligned reads displayed.

CTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCT  >  DH1/2169466‑2169763
                                                                                                                                                      |                                                                                                                                                    
cTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGAGCGGATCAACCGGTTCTTCTCGATCCGCATTAGCCGGTTGCTGTTCCCGTTGGCGCGCTTTTTCTCGGGCAATAGCGGCTTCGCCGGCGGCTTGGCGGGGCTCg                                                                                                                                                      >  1:1232313/1‑151 (MQ=255)
 ttGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGAAGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGATTGCGCGCTTTGGCTCGGGCCATAGCGGCTGGGACGGCGGCTGGGCGGGGCTCgc                                                                                                                                                     >  3:247151/1‑150 (MQ=21)
  tGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTCTTCTGGGTCCGCATTAGCCTGTTGCTGTTCCAGATAGCGAGATGTGCCGCCGGCAATAGAGGCTGCGACTGAGGCGTTGCGCGGATCGAc                                                                                                                                                    >  3:1504370/1‑151 (MQ=11)
  tGCGGGCGTTCGCGCGGGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTTGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGa                                                                                                                                                     <  3:764754/150‑1 (MQ=14)
    cGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                                                                                  <  1:908458/151‑1 (MQ=255)
     gTGCCTTGGCGCGGGCAATAGCCGCGTCCACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtg                                                                                                                                                 <  1:183278/151‑1 (MQ=255)
       gcgtttgcgcGTGCAATAGCCGCTGCGACGGCAGCTGTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                                                               <  3:1123139/145‑1 (MQ=255)
       gcgttGGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                                                               <  5:795801/148‑1 (MQ=255)
        cTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGAACAGGTGTTCTGGCTCCGCATTAGCCAGTTGCTGTTCCGGTTTGCGCGGGTTGGCTCGGGCAATAGCGTCTTCGACGGCGGCTTTGCGCGGATCGAcgggggg                                                                                                                                              >  4:559435/1‑145 (MQ=14)
         gttGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGTGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttgt                                                                                                                                             <  3:678381/150‑1 (MQ=255)
         gcgcgcccgggCAATAGGGGATTCGACGGCAGCGTTCATCGGATCTAGCTGTACTTCAGGGTCGTGATTAGGCGGGGGCTTCGGAAGTTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttgt                                                                                                                                             <  5:1828877/141‑1 (MQ=2)
           tGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGGTTGCGAGCTTTGGCTAGAGCAAAAGCGCCTACTCCAGCGGATTAGAGAGCATCGACCTGTTGTTc                                                                                                                                           >  2:773221/1‑151 (MQ=18)
             gcgcGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                                                         <  7:732550/151‑1 (MQ=255)
              cgcgTGCAATAGCCTCGGCGACGGCGGCTTTGCGCGGATCTCACTGTGCGTCTGGGTCCGCATTCGGCTGTTGCTGTTCCCGCTTTATTGCCTTCGCTCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTgg                                                                                                                                        <  3:361127/151‑1 (MQ=2)
              cgcgTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTgg                                                                                                                                        <  5:380632/151‑1 (MQ=255)
                  ggCAATAGCCTCTTCAACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCg                                                                                                                                    <  4:862568/150‑1 (MQ=255)
                  ggCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCg                                                                                                                                    <  6:94077/150‑1 (MQ=255)
                  ggCAATAGCCGCTGCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCg                                                                                                                                    <  8:633589/150‑1 (MQ=255)
                   gCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg                                                                                                                                   <  5:570653/151‑1 (MQ=255)
                   gCAATAGCCGCTGCAACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg                                                                                                                                   <  4:163668/151‑1 (MQ=255)
                   ccacgcgccgccGCGCCGGCCGCTTTGCGCGGATCTATTTTTTCTTCTGCCTCCGCATTAGCATTTTTCTGTTACATCTTTCTTGCTTTGGCTCGTGCAATATCTTCTGATATTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTccg                                                                                                                                   <  4:532470/145‑3 (MQ=2)
                    cAATAGCCTCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGc                                                                                                                                  <  3:80399/151‑1 (MQ=255)
                    cAATAGCCGCTTCGACGTCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGc                                                                                                                                  <  8:1757283/151‑1 (MQ=255)
                       tAGCCGCGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGAGCTAGGAATAGCGTCTTCTACGGCACCATTGAGCGGATATAACTATAGTTCTgggtgcgcagt                                                                                                                               >  6:712487/1‑142 (MQ=12)
                        cgCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa                                                                                                                              <  7:1154797/150‑1 (MQ=255)
                        atgcGCTGCTACTGCAGCTTTTCGCGTATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCGCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa                                                                                                                              <  1:179306/148‑1 (MQ=14)
                        aGCGGCGTCGACTGGAGCGTTTGGCGGATCAACCTGGTCTTCTGGCTCCGGATTAGCCTTTTGCTGTTCCCGTTTTCGGGCCTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAtt                                                                                                                               <  5:828093/150‑1 (MQ=14)
                         gCCTCTTCCACTGCAGGTGTGCGAGGATCTCCCTGGTGTTCTGGCTCGTCTTTAGCCGGTTGCTGTGCGCGTTTGCTCGCTTTTGCGCGGGCAATAGCGGCTTCGACTGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAg                                                                                                                             <  2:169424/151‑1 (MQ=9)
                           cgcggcaactgCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGTGCTTTGGCGCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGcc                                                                                                                           <  1:284461/141‑1 (MQ=11)
                              ttCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCGATAGCTGCTTCGACGGCGGGTTTTCGGGGATCGGCATCGGGTTCTGGGTCggtagtttgctgt                                                                                                                        >  7:1553420/1‑140 (MQ=18)
                              ggcGACGGCAGCTTTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGt                                                                                                                        <  3:987775/149‑1 (MQ=255)
                                  actgccgCTTTGCGCGGATCAACCTGTTCTTCTTGCTCCGCATTAGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCt                                                                                                                    <  3:657825/145‑1 (MQ=255)
                                  aCGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc                                                                                                                     <  6:841374/150‑1 (MQ=255)
                                   atgCAGATTTGGGAGGATCTACGTGTTGTTCTGGCTCCGGATTAGCCTGTTGCTGTTCCGGTTTGCTGGCTTTTGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTg                                                                                                                   <  8:812765/149‑1 (MQ=14)
                                      cagcttttgtatgATGAACCTGTTCTTCTGGGACCGCATTAAACGGTTGGTGTGGCCGGTTGCGTGCTGTGGCGCTGTCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑Tc                                                                                                               <  1:413026/139‑1 (MQ=9)
                                       cgCTTTGCTAGTATTAACCTGTTCTTCTTGCACTTCATTAGGCTGTTGCTCTTTGGGTTTTCTGGCCTTTGCGCGGGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑Tcc                                                                                                              <  2:235976/150‑1 (MQ=2)
                                       aGCTTTGCGCGTAGCTACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCGGGTTTGCGCGCGTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑Tcc                                                                                                              <  7:882427/151‑1 (MQ=14)
                                        gaggtccgcgGATGCACCTGTTCTTCTGGTTCGGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCa                                                                                                             <  2:870138/145‑1 (MQ=11)
                                           ttggggttagcAACCTGTTCTTCTGGCTCCGCATTATCCTGTTGCTGTTCCCGTTTTTTGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGc                                                                                                           <  4:482355/140‑1 (MQ=14)
                                               tctgttaaacgttttcttcTGTCTCCGCTTTTGCGTGTTGCTGGTCGGGTTTTTTGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGc                                                                                                       <  6:1141970/137‑1 (MQ=2)
                                                cgGATCAACCTCTTCTTCTGGGTCCTCATTTGCCGGTTGCTTTTCGCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTGCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGt                                                                                                     <  2:1507898/151‑1 (MQ=14)
                                                      aactagTTTTTCTGGCTCCGCTTTAGCCTGTTGCTGTTCCGGTTTTGGGGCTTTGGCTCGGGCAATAGCGGCTTCCACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGGTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTg                                                                                               <  1:1498197/146‑1 (MQ=14)
                                                      aaCCTGTTCTTCTGTCTCCGCATTAGCGTGTTGCTGTTGCCGTTTGGGGGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTg                                                                                               <  8:387265/151‑1 (MQ=14)
                                                        ccTCTTCTTCTCCCTCCGTATCAGTCGGTGTCTCTCCTCGTTTGTGTGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGc                                                                                             <  6:810989/151‑1 (MQ=14)
                                                         gtGTTCTTCTGGCTCGGCCATAGCCGGTGGCTGGTCCGGTGTGCCCGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCa                                                                                            <  1:770764/150‑1 (MQ=14)
                                                           tagcttctGGCTCCGCATGAGCCTTCTGCTGGGCGCCTTTGCTCGCGTTGGCGCGGGCAATAGCCGCGTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCa                                                                                            <  7:522617/146‑1 (MQ=14)
                                                           gcagttctTGCTCCGCTTTACCCTTGTGCTGGTCGGGTTTGTTGGCGTGTGCGCGGGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCa                                                                                            <  2:1443169/145‑1 (MQ=2)
                                                           gTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGATTGCGCGCTTTTGCACTCGAAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTAGTTCTGGGTCCGCATTCGCCTGTTGCTGG‑TCGGGCGTGCGGGCGTGGGCACg                                                                                          >  5:547288/1‑151 (MQ=11)
                                                              ggtctcggtcgggcttAGCCGGTTGCTGGGCGGCTTTTCGGGCGTGCGCGCGGGCAATAGCCGCTTCGACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGc                                                                                       <  1:348511/137‑1 (MQ=14)
                                                              attcggccTCGGCATTAGCCTGCTGCTGGTCCCGTTTGCGCGCGTTCGCGCGGGCAATAGCCGCGTCCACGGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGc                                                                                       <  1:1097620/144‑1 (MQ=14)
                                                               ttctGGCTCGGTATTAGCCTGTTGCTGTTCGCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGc                                                                                       <  2:623374/150‑1 (MQ=14)
                                                                  tGGCTCCGCATTAGCCGGTTGCTGTTCCAGATTGCGCGCTTATCCTAAGACAATAGAGTATTCGAAGGCTGATTATCGATGATAAACATGGTGTTCTGGCTCTAAATTATAATAATGATGT‑TCCAGCTTGCGGGCTTTGGGGCggggagtg                                                                                   >  8:58578/1‑146 (MQ=255)
                                                                  gggCTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGCGCTGTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATa                                                                                   <  1:621723/150‑1 (MQ=255)
                                                                   ggctcgtgaTTAGCCTTTTGCTGTTCGCGTTTGCGGGCTTGCGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCaa                                                                                     <  4:1240786/140‑1 (MQ=14)
                                                                       ccccacgaGCCGGCTGCGGTTCCCGTTTGCTGGCGTTGGCGCGGGCAATAGCCGCTGCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGc                                                                              <  5:1179997/144‑1 (MQ=14)
                                                                          cATTTGGCGGTTGCTGTTCTAGTTTTCGAGCTTTTGTGTTTGCTATATCGTCTTTGTGGGGTGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt                                                                            <  6:1460383/150‑1 (MQ=9)
                                                                            ttatgctgTTGCTGTTCGGGTTTGCTGGCTTTTGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                                                          <  6:395737/143‑1 (MQ=14)
                                                                             tatccttttGCTGTTCCCGTTTGCGCGCTTTTGCTCGTGCAATAGCCTCTTCGACGTCGTCTTTGATCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGa                                                                         <  2:1244792/143‑1 (MQ=17)
                                                                              cgCCGGTTGCTGGGCGGCTTTGCGGGCGTTCGCTCGGGCAATAGCGGCTGCCACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc                                                                        <  3:1235588/149‑1 (MQ=14)
                                                                              atcctgTTGCTGTGCCCGTTTGCTGGCCTGCGCGCGGGCAATAGCCGCGTCGACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg                                                                       <  6:1310448/146‑1 (MQ=14)
                                                                              accctggtGCTGGTCCGGTTTGCGCGCGTGGGCTCTGGCAATAGCGGCTTCCACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg                                                                       <  7:1119529/144‑1 (MQ=14)
                                                                              aGCCTGCTGCTGTGCCGGTTTGCTCGCGTGGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc                                                                        <  5:905826/150‑1 (MQ=14)
                                                                               gacGGGTGCTGTTCGCGAGTGCTCGCGTGGGCTCTTGCCATCGCGGCTGCGACGGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcgg                                                                      <  5:738036/149‑1 (MQ=14)
                                                                               ccctggtGCTGTTCCGGGTTGCTGGCGTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcgg                                                                      <  1:468180/145‑1 (MQ=11)
                                                                                  ggTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGGTTTGGCACGGGCAAGCGCGGCTGCGAcggcgg                                                                   >  7:103027/1‑151 (MQ=255)
                                                                                   gtggCTGGTCCAGATTGCGGGCTTTGGGTCGTGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACggcggc                                                                  <  5:1432275/148‑1 (MQ=14)
                                                                                      ggtGTTCCCGATTGCGCGGTTTGGCTCGTGCAATAGCGGGTTCGCCGGGCTGTTTGCGCGGATCCAGCTCTTCTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCtt                                                                <  1:1037271/148‑1 (MQ=11)
                                                                                      gcaggtcccgggagcgcgcTGTGGCGCTGGCACTAGCGGCGGCGACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt                                                               <  1:567527/138‑1 (MQ=11)
                                                                                      gCTGTTCGGGTTTGCGGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCtt                                                                <  8:1130940/150‑1 (MQ=14)
                                                                                      gCTGTTCCCGTTTGGGGGCTTTTGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCtt                                                                <  3:995292/150‑1 (MQ=255)
                                                                                      gCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTCCGCGGATCGCCCTCGGTTGCTGGGTCGGCATTATCCTGTTGGTGT‑TCCAGCTTGCGTGGTTTGGCCGGGGAAATAgctgctactcctgcagtatt                                                               >  7:1296227/1‑137 (MQ=9)
                                                                                        tGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGATTTGCGAGGATAGAGCTGATGATCTGCGTCGGCATTAGCATGTTGCTGT‑TAAATCTTGCGATCTTTGGACCGGGAAATAGATGCTTCAACGGCAGGTTTgc                                                             >  6:1459556/1‑151 (MQ=255)
                                                                                        tGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGATCGGCATTAGCCTGTTGCTGT‑TCCAGCt                                                                                                          >  5:653865/1‑106 (MQ=255)
                                                                                        tGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGCCTTCGACGCCGCCTTTGCGCGGATCGCACTGTTGTTCTGGTTCGGCATTAGCATGTTGCTGT‑TAAAGATAGCGCGCTTTGGCGCGGGCCATAGCGCGGTCGAcgcccggtgtgc                                                             >  3:1497686/1‑141 (MQ=255)
                                                                                         gttcgtgtttttttgcTTTTGCGCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                            <  8:1115856/137‑1 (MQ=11)
                                                                                         ggagccgggtGCGCGCGGTGGCTCGGGCAATAGCCGCGTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgc                                                             <  3:524418/141‑1 (MQ=14)
                                                                                         gTTCCCGTTTGCTGGCTTTTGCTCGGGCAATAGCGGCTTCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                            <  6:368252/151‑1 (MQ=255)
                                                                                         gTTCCCGTTTGCGGGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgc                                                             <  7:968572/150‑1 (MQ=255)
                                                                                          ttCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGATGCGTTGCGCGGATGGAAGTGTTATTCTGGGTCGGGATTAGGATGTTGCTGT‑TCGAGCTTGAGCGGTTTGAAAAGGGCGATAGCGGGTTCGAcgggggggtggcgg                                                           >  2:1560561/1‑143 (MQ=255)
                                                                                          gtccaggtggcgtgcgtTGGCGCGTGCACTTGCGTCGTCGCCGGCTGCGATCTGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGCCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc                                                           <  5:1625302/142‑1 (MQ=2)
                                                                                          ggcgcctttGCGGGCGTTTGCGCGGGCAATAGCCGCGGCTACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc                                                           <  7:249558/145‑1 (MQ=14)
                                                                                           tCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGGTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCGTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTCcgcg                                                          >  7:366611/1‑151 (MQ=17)
                                                                                           cgccgctcgcgcgcTCTCGCGCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                            <  6:883953/141‑1 (MQ=11)
                                                                                            ccccTTTGCTCGCGTGCGCGCGGGCAATAGCGGCTGCCACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGGGCTTTGGCACGTGCAATAGCGGCTTCGACGGCGGCTTTGCGCgg                                                         <  7:211834/151‑1 (MQ=11)
                                                                                              ccttttgtggcTTTCGCGCGGGCAATTGCCGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGCTCGGCATTATCCTGTTGCTGT‑TCCTGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                       <  4:732454/142‑1 (MQ=11)
                                                                                              cGTTTTCGGGCGTTCGCTCGGGCAATAGCCGCTTCGACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                       <  7:748737/151‑1 (MQ=14)
                                                                                               gTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                      <  3:921023/151‑1 (MQ=255)
                                                                                                     gcgcgtgcgcgcGGGCAATAGCCGCTTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGGTCGGGATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                 <  6:672537/139‑1 (MQ=11)
                                                                                                       gcctttgCTCGGGCAATAGACGCGGCTTCTGGGGCTTTGCGCGGATCTACCTGTTCTTCTGGGTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGtt                                              <  2:825897/145‑1 (MQ=11)
                                                                                                        cgtttgctattgCAATAGCGTCTGCAACTGCGGATTTTCGCGTAGCTACCTGATGTTCTGGCTCCGCATTAGCCTGGTGCTGT‑GCGTGGTTGCGTGCTTTTGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGttc                                             <  4:1094966/140‑1 (MQ=2)
                                                                                                           tGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACATGTTGTTCTGGGTCGGGATTAGCCTGTTGCTCT‑TCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCTGCTTCGACGGCTGTTTTTCGAggctgagcctggggttc                                          >  3:356117/1‑136 (MQ=11)
                                                                                                                 ccgcccgcgCGGCCGCGCCGGCCGCTTTGCGCGGATCTACGTGTTGTTCTGGGACGTCCTTGGCCTGTTGCTTT‑TCTCTCTGGCGTTCGTTTGCAGGGGCTTTAGCTGCTTATCTTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTc                                    <  1:146116/143‑1 (MQ=9)
                                                                                                                     aatagcctcggccaCGGCCGCTTAGCGAGTATCCACCTGTTCTTCTTGCCCCGCATTAGCCTGTTGCTGTCTCCCG‑TTTCTTGCTTTCGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCCTCTGGTTCCGCa                                <  8:1478855/138‑1 (MQ=2)
                                                                                                                                  actgccggtttGCGCTGATCTATCTGTTGTTATTGCTCGGCATTATCCTGTTGCTGT‑TCGTGGTTTTTTGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGc                    <  8:690566/142‑1 (MQ=14)
                                                                                                                                      cggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTc               >  8:1345884/1‑151 (MQ=40)
                                                                                                                                          tttGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGAGCTTTGGCACGGGCAATAGCTGCTTCGACGGCTGATTTGCGAGGATCACCAACTGGTTCTGCGTCCGAATTAGCCTGATGATCTTCCAGc           >  2:1020516/1‑151 (MQ=11)
                                                                                                                                                cgGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTGCGGGGATCCCCAACTTGTTCTGGTTCCGAATTATCCTGTTGGTGTTCCTGCTTccgg     >  7:130022/1‑150 (MQ=11)
                                                                                                                                                  aaTCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCAACGGCCGATTTACGGGGATCCCCAACTTGTTCTGGTTCCTTATTATCCTGATGCTCTTcctgattccccg    >  3:153337/2‑140 (MQ=2)
                                                                                                                                                   aTCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGAGGATCGCCCACTGGTGCTGCGTCCGCATTATCCTGATGCTGTTCCAGCTTccgcggt  >  5:1091180/1‑149 (MQ=11)
                                                                                                                                                   aTCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGAGCTTTGGCACGGGCAATAGCGGCTTCGACGGCAGCTTTGCGAGGATCAACAACTTATTCTGCTTCCTAATTATGCTGATGATGTTCCAGATTGCGAGCt  >  8:1424006/1‑151 (MQ=11)
                                                                                                                                                      |                                                                                                                                                    
CTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGT‑TCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCT  >  DH1/2169466‑2169763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑