| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | DH1 | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 3,668,919 | 1 | . | T | 94.6% | 1348.9 / 58.2 | 389 | pseudogene (358/455 nt) | lpxA | hydroxymyristoyl‑ACP dehydratase |
| Reads supporting (aligned to +/- strand): ref base . (18/3); new base T (172/195); total (191/198) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.07e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 428 total aligned reads displayed.
CCTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑T‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCTGT > DH1/3668770‑3669064 | ccTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t > 3:1337606/1‑151 (MQ=255)ccTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t > 6:466765/1‑151 (MQ=255) tCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t‑ttt‑t < 2:658769/150‑1 (MQ=255) ccACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t‑ttt‑ttc < 1:1040851/151‑3 (MQ=255) ccACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t‑ttt‑ttc < 6:70016/151‑3 (MQ=255) cacaATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t‑ttt‑ttcg > 6:1131135/1‑148 (MQ=255) acaATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACCGGTCAGGCCGCGGCGC‑G‑t‑ttt‑ttcg > 2:593211/1‑147 (MQ=255) ggCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTg < 1:991747/151‑1 (MQ=255) cGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGAc > 8:496841/1‑151 (MQ=255) cGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGAc > 5:563932/1‑151 (MQ=255) ggTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACt > 1:1531572/1‑151 (MQ=255) ggTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACt < 1:1180349/151‑1 (MQ=255) tGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCATAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTcc > 6:1489899/1‑151 (MQ=255) ggATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCa < 4:508051/151‑1 (MQ=255) gATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCAt < 4:745425/151‑1 (MQ=255) cacaAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATc < 3:369963/151‑1 (MQ=255) cacaAAGGCGGATTTATCAATCACGTATCAGGCCTCACGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACAAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGCCGCGG‑T‑TTA‑TCGAAAGTGACTTCCAAGAt > 8:942799/1‑150 (MQ=255) acaAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATc > 1:1099409/1‑150 (MQ=255) acaAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCa < 1:729516/151‑1 (MQ=255) caAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCAt > 4:118761/1‑151 (MQ=255) caAAGGCGGATTTATCAATCACGTATCAGGCCGCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCAt < 1:218576/151‑1 (MQ=255) aaaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCAtt > 7:1151375/1‑151 (MQ=255) aaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCAttt < 5:1147022/151‑1 (MQ=255) cGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGTCGC‑GTT‑TTT‑TCGAAAGTTACTTCAATGATCATTTGATc < 1:51449/151‑1 (MQ=255) ggATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCg > 2:335186/1‑151 (MQ=255) ttATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGcc > 2:409576/1‑149 (MQ=255) tATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAg < 5:1496008/150‑1 (MQ=255) tATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAg < 4:914388/150‑1 (MQ=255) atcaatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGc > 5:902838/1‑151 (MQ=255) caatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCa < 2:1175154/150‑1 (MQ=255) aatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACg > 5:945516/1‑151 (MQ=255) atcaCGTATCAGGCCGCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGa < 2:1548514/151‑1 (MQ=255) aCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGCGG‑T‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGAccc > 5:1389652/1‑150 (MQ=255) cGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGGACGACCgg > 2:900677/1‑151 (MQ=255) tATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGgc > 8:327562/1‑151 (MQ=255) aTCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGgc < 4:995878/150‑1 (MQ=255) tCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGgcgc > 6:560526/1‑151 (MQ=255) cAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCt > 7:167661/1‑151 (MQ=255) cAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCt > 4:1469185/1‑151 (MQ=255) aGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCtt < 8:613746/151‑1 (MQ=255) aGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCtt < 2:1066541/151‑1 (MQ=255) gCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGa < 4:597889/151‑1 (MQ=255) tCCCGGCTACGAGCACCCATCATCGTTGCTTCGCAACCTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGGCAGGCCGCGGCGG‑G‑TGTTT‑TCGCAAGTGACATTCCTGATCATTTGAGCGCCAAGCCCCGCCGGgcgcctcgcgc > 7:661345/1‑144 (MQ=255) gccGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgc < 8:1006113/149‑1 (MQ=255) cccGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgcg > 3:701952/1‑151 (MQ=255) cccGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgc < 5:755413/150‑1 (MQ=255) ccGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgcgc < 3:726900/151‑1 (MQ=255) cGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgcgcg < 3:1294077/151‑1 (MQ=255) cGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgcgcg > 4:824030/1‑151 (MQ=255) tACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTc > 1:378475/1‑151 (MQ=255) aCGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCtt < 4:253843/149‑1 (MQ=255) aCGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCg < 1:643050/151‑1 (MQ=255) gAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑c < 8:1469827/151‑1 (MQ=255) gAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑c < 7:939460/151‑1 (MQ=255) aGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑c > 3:289874/1‑150 (MQ=255) acacaTCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATa < 4:1006315/151‑1 (MQ=255) cacaTCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATAc < 6:1375989/151‑1 (MQ=255) tcatcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGc > 3:558263/1‑151 (MQ=255) catcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGc < 2:170174/150‑1 (MQ=255) atcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑T‑TTTCTCGAAAGTGACTGCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGa < 7:404030/151‑1 (MQ=255) cGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAag < 7:1088387/151‑1 (MQ=255) tGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAagt > 3:1067210/1‑149 (MQ=255) gCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAagtagt < 1:808530/151‑1 (MQ=255) ttCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTAc > 6:259458/1‑151 (MQ=255) tCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTAc > 2:47762/1‑150 (MQ=255) gCAAACTACTTTACCATCGACCAGAGCAACCCGTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGc < 8:245488/151‑1 (MQ=255) gCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGc > 2:1308350/1‑151 (MQ=255) aaaCTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTc > 4:1075294/1‑151 (MQ=255) tttACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACACCTCACCCCGt > 4:1515678/1‑151 (MQ=255) ttACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCgg < 8:425831/149‑1 (MQ=255) ttACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCgg < 5:1301787/149‑1 (MQ=255) tACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGtt < 4:1278418/150‑1 (MQ=255) tACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCCAAGTAGTACAGCTCACCCGGTTc > 7:336559/1‑151 (MQ=255) aCCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGCAAGTGACTTCCATGATCAATTTATCGCCAGGCCCGCCCGGGCGCTTGCAGCGCGCTTCGT‑CAATACCACCGAAGTAGTACAGCGCCCCCGGttgc > 7:530451/1‑149 (MQ=255) cATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTcc > 5:25290/1‑149 (MQ=255) cGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGtt < 5:388349/150‑1 (MQ=255) ccAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTcc > 3:485329/1‑151 (MQ=255) gagCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TGGAAAGTGCCTTCCATGATCATTTGATCGCCAGGCCCGCCCGGGCGGTTTGAGCGCGCGTGGT‑CAATAACAGCGAAGTAGTACAGGGCACCCGGGTGCAGGTTTGCTAc > 7:85665/1‑151 (MQ=255) gagCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTAc < 4:1219890/151‑1 (MQ=255) cAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCt < 8:1266059/151‑1 (MQ=255) aaCCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCAACCGGTTCCAGTTTTCATACGCtt > 6:954529/1‑151 (MQ=255) ccccTTTAAAACGGGTCAGGCCGCGGCGCGG‑T‑TTT‑TGGAAAGTGACTTGCATGATCAATTTATCGCCCGGCACGACCGGGCGCGTTAACCGCGCGTGGTGCAAAACC‑CCGCAGTAGTACAGCACACCCCGGTGCAGGTTTTCTACGCgttt > 7:72714/1‑151 (MQ=255) ccTTTAAAACGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTa > 3:854413/1‑150 (MQ=255) aaaaCGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGcc > 2:293340/1‑151 (MQ=255) aaaaCGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATAATTTGAACGCCAGGCACGCCCGGGCGCTTGAAGCGCGCTTCGG‑CAATACCAGCGAAGTAGTACAGCTCCCCCGGTTCCAGTTTTACAACGCTTTTAAAcccc > 3:1542608/1‑151 (MQ=255) aaCGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGcc > 2:708675/1‑149 (MQ=255) aCGGGTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGCCCGGGCGCGTGAATCGCGCTTGCT‑CAATACCAGCCAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCGTTTAAACGcc > 5:1100061/1‑148 (MQ=255) ggnNNANNCNGNNGCTN‑NTT‑TTT‑TCNAAATTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTATTACAGCTCACCCGGTTCCAGTTTTCCTACGCtttt < 1:137164/139‑1 (MQ=255) gggTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAAt > 6:1249634/1‑151 (MQ=255) gggTCAGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAAt > 8:726564/1‑151 (MQ=255) aGGCCTCGGCGCTT‑T‑TTT‑TCGAAAGTGACTTCCATGAACAATTGATCGCCAGGAACCACCGGGCGCTTGAAGCGCGCATAGT‑CAATACCAGAGAAGTAGTTCACCTCACCCGCTTCGAGTTTTCCTACGCTTATAAACGCCACAATACCTg > 8:1063964/1‑151 (MQ=255) aGGCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTg < 8:374491/151‑1 (MQ=255) ggCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACCCCAGAATACCTGt < 6:10466/151‑1 (MQ=255) gCCGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGtt < 4:312947/151‑1 (MQ=255) ccGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTg > 6:381601/1‑151 (MQ=255) ccGCGGCGC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTg > 4:137731/1‑151 (MQ=255) tgcggcgC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTACAGTTTTCCTTCGCTTTTAAAAGCCAGAATTACTGTTGc > 6:814820/2‑151 (MQ=255) gcggcgC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATAACAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGcc > 7:1307812/1‑151 (MQ=255) cggcgC‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCTCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCt < 6:1415645/151‑1 (MQ=255) gcgc‑GTT‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCtgt < 8:843528/151‑1 (MQ=255) | CCTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑T‑TTT‑TCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGT‑CAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCTGT > DH1/3668770‑3669064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |