| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 2,169,598 | 0 | G | T | 22.0% | 254.5 / 10.3 | 160 | A654A (GCC→GCA) | rsxC | electron transporter RsxC |
| Reads supporting (aligned to +/- strand): ref base G (35/89); new base T (0/35); total (36/124) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.62e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 176 total aligned reads displayed.
AGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTG > DH1/2169448‑2169747 | aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcg < 2:508650/151‑1 (MQ=255) ccTGTTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc < 7:245132/151‑1 (MQ=255) ccTGTTGCTGGTCCCGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc < 1:467329/151‑1 (MQ=255) gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCAACAGGTTCGTCGTGCTCGCCATTACCCAGTTGCTGTTCCCGATTGCGTGCTGTGGCTCGGCAAATAGCGGCTTCgcgggcggg > 1:1313751/1‑150 (MQ=14) ttGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCGGCTTCGACGGCAGCTTTGCGAGGATCAGCATGTTGTTCTGGGTCCTCGTTAGCCGGGTGCTGTTACCTCTTGCGCGCTTTTGGTCGGGCGTTAGCGGGGTCGAcggcggat > 7:1107618/1‑149 (MQ=14) gCTGGTCCAGCTTGCGGGCTTTCGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCtt < 2:299009/150‑1 (MQ=255) tGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGAAGCTTTGCGCGGATCACCCTGTTCTTCTGGCTCCGCATTAGCCCGTTGCTGTTCCCGATTGCGCGCTTTGGCTCGGGCGATAGCTGCTTCAAcggccccagtgc > 7:603880/1‑143 (MQ=14) ggtCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc < 7:111278/148‑1 (MQ=255) gTTCCTGCTTGCTTGCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg < 4:973108/149‑1 (MQ=255) gTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGGTTTACGCGGTTCACCCTCGTCTTCTGCCTGCGCATTACCAGGTTGGTGTTCCAGTTTGCGCGGTTTGGGGATGGCAATAGCGGCTTCGCCGGCGGGTTTgcg > 1:1087562/1‑151 (MQ=14) gTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc < 7:1070760/150‑1 (MQ=255) gTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg < 6:56390/149‑1 (MQ=255) gTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg < 2:16850/149‑1 (MQ=255) tCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGAGGATCCACCTGTTCTTCTGGGTCCGCATTACCGGGTTGCTGTTCCCGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGCCggcggcgtggggcg > 7:58765/1‑143 (MQ=14) cgcgCTTGCGGGCGTTGGCGCGTGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg < 8:129093/147‑1 (MQ=17) gcggttgattGCTTTCGCGCGTGCAATAGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa < 4:1459746/142‑1 (MQ=17) cgCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt < 5:633973/150‑1 (MQ=255) cgCTTGCGGGCCGTGGCGCGGGCAATCGCCGCGGCGACGGCAGCGGTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt < 7:1319567/150‑1 (MQ=14) aGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCggtt < 7:1116392/151‑3 (MQ=255) gatttattgcatgtgcgcGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt < 6:821485/136‑1 (MQ=17) gCTTGCGGGCCTTGGCGCGGGCAATAGCCGCTGCTACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 3:951748/151‑1 (MQ=14) gCTTGATTGCGTTTGCGCGTGCAATAGCCGCTGCCACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 4:1323049/151‑1 (MQ=14) cTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCAGCTGTTCTTCTGTCTCCGCATTAGCGGGTTGATGTTCCCGTTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGCcggcgggggggcgcggggcg > 5:1290605/1‑137 (MQ=255) ttGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGGGGATCACCCAGGTGTTCTGGATCCGGATTAGCGGGTTGCTGTTCCGGGTTGCGCGCTTTGGCTCGGGCGATAGCTGCTTCTACGGCGGGTTTCCGGGGATCgg > 5:158769/1‑150 (MQ=255) ggactgcgcgcGTGCAATAGCCGCTGAGACGGCAGCTTTGCGGGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCtgt < 2:814923/144‑1 (MQ=14) gcttgagctcgggCAATAGCCGCTTCTACGTCGTCGTTGTTCGGATCTACTTGTTCTTCTTGCTCCGGATTAGCCTTTTGCTGTTCGCGGTTTTTGGCTTTTGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCtgtt < 4:421903/139‑1 (MQ=2) cTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGGTTGCGCGCTTTGGCGCGGGCGATAGCGGCTTCGACGGCGGCTGTGCGCGGGTctgccggggg > 1:975229/1‑142 (MQ=14) gttGGCGCGTGCAATAGCCGCTTCCACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttgt < 3:1087439/150‑1 (MQ=255) ttgcgcGTGCAATAGCCGCGTCTACCGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTgttgtt < 4:1234682/148‑1 (MQ=14) gtgcgcGTGCAATAGCCGCGGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTgttgtt < 4:447850/148‑1 (MQ=255) ggCGCGGGCAATAGCCGCGGCCACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt < 8:1052846/151‑1 (MQ=14) gcgcGTTCAATCGCCGCTTCGACGGCAGCTTTGCGCGGATGAACCTGTTGTTATTGCTGCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGTCTCGGGGAATAGCGGCTTCGAGGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg < 8:1135396/151‑1 (MQ=17) ccgccactAGCCGCTGCGACGGCCGCTTTGCTCGGATCGACCTCTTCTTCTGCCTCCCCATTATCCGGTTTCTGGACCTCATTGCGCGGGTCTTCACCGCCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTggtt < 7:191528/144‑3 (MQ=2) gggCAATAGCCGCGGCGACGGCAGCTTTGCTCGGATCAGCCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTGCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTc < 1:832192/149‑1 (MQ=14) gTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGGTCCGCATTAGCCGGTTGCTGTTCCCGATTGCGCGCTTTGGCGCGGGCGATAGCTGCTTCGACGGCAGATTTGCGTGGATCGGCCTGGGGTGCTgggtg > 7:809707/1‑148 (MQ=14) gCAATAGCCGCTTCGACGGCAGCTTTGCGCGGAGCAACCTGGTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg < 3:125740/151‑1 (MQ=255) gCAATAGCCGCTGCCACCGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCg < 8:262612/150‑1 (MQ=255) cAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTGCGACGCCGGCTTTGCGCGGATCGACCTCGTGTTCTGGCTCGGc > 3:1280022/1‑151 (MQ=255) aaTAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCAGATTTACGAGGATCGACATCTTGTTCTGGGTCGGc > 6:1236367/1‑150 (MQ=14) atccGCTTCTACGGCAGCTCTGAGCGGAGAAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCCCGTTTGCTGGCGTTTGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAtt < 4:575720/148‑1 (MQ=14) aGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa < 8:227893/151‑1 (MQ=255) aGCCGCTGCGTCGGGAGCTTTGCTCGGATCATCCTCTTCTTCTGGCTCCGGATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa < 1:1015865/151‑1 (MQ=17) aGCCGAGTCGACGGCAGCTTTGATCTGATCATCCTGTGATTATGGTTCTGCATTCTCCTTGTGCTGGTCGGCTTTTCTCGCTTTTGCTCGGGCAATAGCCGCTGCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAtt < 6:1407240/150‑1 (MQ=9) cGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCACGGGCAATAGCGGCTACGAAGACCGAGTTGCGCGGATAGACCTGTTCTAGTGGATCAGCATTAGcc > 8:79733/1‑151 (MQ=14) gCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGCTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCt < 8:1196224/151‑1 (MQ=255) gtctaCGGCAGCTGTGCGCGGATCACCCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGt < 3:1401501/147‑1 (MQ=255) caaccgccgCTTTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCGGCTGCTGGTCCCGTTTGCTGGCTTTTGCTCGGGCAATAGCGGCTGCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGtt < 8:1513762/142‑1 (MQ=17) cGACTGCAGCTGTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGtt < 3:164498/150‑1 (MQ=255) cGACGTCAGCTTTGATCTGATCAACCTGTTCTTCTGGCTCCGCATTAGACGGTTGCTGTTCCCGTTTGCTCGCTTTCGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg < 6:973003/151‑1 (MQ=17) gACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc < 7:683826/151‑1 (MQ=255) cGGCAGCTTTGGGCGGATCAACCTGTTCTTCTGGGTGCTCAGTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTg < 3:222235/151‑1 (MQ=14) gCAGCTTTGCGCTGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGGTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGtt < 7:1540855/151‑1 (MQ=255) ccAGCGTTCCGCGGATCAACCTGTTCTTCTTTTTTTTCATTAGCCGGTTGCTGTTCCAGTTTGAGATCTTTGGATCGTGCTATAGTCGCTTAGACTGTTGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGtt < 2:1180655/150‑1 (MQ=255) cAGCTTTGCTATTATCTACCTGTTCTTCTGGCACCTCATTAGCGTGGTCCTGTTCCCGCTTCCGCGCTTCGCATCGGCCATTAGCCGCTTCCACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTc < 6:620617/151‑1 (MQ=2) gcgttGCGCTGATGAACCTGTTGTTCTTGCTCGTCTTTAGCCTTCTGCTGTTCCGGTTTTTTGGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTcc < 4:1505452/147‑1 (MQ=2) cTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGGTTTGCGTGGATCGGCAACGGGTTCTGCGTCGTCATTTTGCTGTTGGTGTTcc > 1:1017677/1‑149 (MQ=11) ttGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGc < 1:1546/150‑1 (MQ=255) ccgcgGATCAACCTGTATTTCTGGCTCCTGAATAGCCTGCTGCTGGTCGGGTTTGCGGGCGTTCGCTCGGGCAATAGCGGCTGCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTg < 8:1330682/150‑1 (MQ=14) ggcggaggtaacTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCCTTGGCGCGGGCAATAGCGGCGGCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGc < 8:396294/140‑1 (MQ=14) atcgGATCATCCTGTACTGGTGTATCCGCATTCGACTGGGGGTGTGCCCGTGTGCGCGGTTTGCTTCGGGCATTAGCCGCGTCCACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTg < 3:1234295/148‑1 (MQ=9) gctCAAGCTGTTCTTCTGGCTCGGCATTAGCCTGGTGCTGTTCCCGTTTGCGGGCTTTCGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc < 3:584973/149‑1 (MQ=14) catccagaacttcttGCTCGTCATGAGCCTGCTGCTGGTCGGGTTTGCTGGCGTGAGCGCGGGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCttt < 7:1514206/142‑1 (MQ=2) aaCCAGCTCTTCTGGCTCCGCATGAGCCTGGTGCTGTGCGCGTTTTCGCGCGTTCGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTg < 7:1475956/151‑1 (MQ=14) tGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGGTCGGCATTAGACTGTTGCTGTTCCAGCTTGAGTGCTTTGTCAc > 7:1385103/1‑151 (MQ=255) gctcttctGGCTCCGCAAGACCCTGCTGCTGTGCGCGTTTTCGGGCCTTCGCGCGGGCAATAGCGGCTGCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACg < 5:161330/149‑1 (MQ=14) gTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCAc < 7:315253/150‑1 (MQ=255) tcttctGTCTCCGCATGAGCCTGCTGCTGTTCCCGTTTGCGGGCGTTCGCGCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACgg < 7:242664/150‑1 (MQ=14) cgtcttgaGCCGGGTGCTGTTCCCGGTTGCGCGCTTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCAACCTGTTGTTCTGGGTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg < 5:154218/142‑1 (MQ=14) cggctttATCCGGTTGCTGTTCGCGTTTTCTGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg < 6:657013/144‑1 (MQ=14) cGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt > 6:429059/1‑77 (MQ=255) gCATTAGCCGGTTGCTGGTCCCGTTTGCGGGCCTGCGCGCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt < 5:773772/151‑1 (MQ=14) gaTTAGCCTGTTGCTGTTCGGGTTTGTTGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc < 8:1113441/150‑1 (MQ=14) cATTAGCGGCTCGCTGTTCCCGTTGGCGAGCTTTGGCGGTTGTAATAGCCGCTGCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc < 8:127079/151‑1 (MQ=14) aaTTAGCCTGGTGCTGTTCGCGTTTTCTGGCCTTCGCGCGGGCAATAGCGGCTTCTACGGCCGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc < 2:1384022/150‑1 (MQ=14) cgtAGCCTGTTGCTGTTCACGATTGTGTTCTTTGGTGCGGGCAATAGCGGCTGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg < 2:1040361/149‑1 (MQ=11) acccgtctGCTGGTCGCGTTTTCGGGCGTGGGCGCGGGCAATAGCCGCGGCCACTGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCACGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg < 5:1186250/144‑1 (MQ=11) tcGGTTGTTGTGCGCGTTTGCTGGCTTTTGCTCGGGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAc < 4:1459319/147‑1 (MQ=14) cgggTTGCTGTGCCCGCTTCCGCGCTTGGCCTGGGGGAATCGAGGCCTCGAGTGCGGCCTTGCGATGATCTACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 5:113172/149‑1 (MQ=11) ccgtctGCTGGGCCCGTTTTGGGGCGTTGGCGCGGGCAATAGCCGCTGCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 7:1494268/146‑1 (MQ=14) gggtgctgggccgctttGCGGGCGTTCGCGCGGGCAATAGCCGCTGCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggcgg < 3:69958/137‑1 (MQ=14) gggtGCTGGTCCGGGGTGCGCGCTTTGGCGCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggcgg < 6:595690/148‑1 (MQ=14) ggTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACCTGTTGTTCTGGATCGGCATTAGCATGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCGATAGCGGGGTCGAgggggg > 6:182599/1‑151 (MQ=14) gtgccgcccccccctGCGCGCTTTCGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCt < 6:442799/137‑1 (MQ=14) gctgggcccGTTTGCGCGCGTTGGCGCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt < 3:427537/145‑1 (MQ=255) gtgcgggTTTGCGGGCTTTAGCTCGGGCAATAGCGGCTGCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGGAATAGCGGCTTCGACGGCGGCTTTg < 1:27783/143‑1 (MQ=14) gTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATAGAGCGGTAGATCTGCCTACTCATGACCATTGACGAGTTCCAGGTTGCGAGCTTTGGCTCGGGCTCTAGATCATTCGACGGCGGGGTTgcg > 3:1180510/1‑151 (MQ=9) ttCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATCGCCCTGGTGTTCTGGGTCGTGATTAGCCTGTTGGTGTTCCAGCTTGCGTGGGTTGGCCGGGGAAATAGCTGCTTCGCcggcggtgttacgc > 3:1449800/1‑143 (MQ=14) tcgggttttggggggttGGCTCGGGGAATAGCCGGGTCTACTGCGGCTTTGCGCGGATCCACCTGTTGTTCTGTATCGTCATTAGCCTTTTGCTGTTCCAGCTTGCGTGCTTTGGCACTTGCAATAGCGGCTTCGACGGCGGCTTTgcgc < 7:406386/135‑1 (MQ=14) gcggttGCGCGCCTGCGCGCGTGCAATAGCCGCGGCCACTGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa < 5:893276/147‑1 (MQ=14) ccgcgtGCGTGCTTTGGCGCGTGAACTAGCCTCTGCCACGGCGGCTTTGCGAGGATCGACCTGTGGTTCTCGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa < 3:187421/146‑1 (MQ=11) gagggcgtttgcgcGGGCAATAGCCGCTTCTACGGCGGCTTTGGGCGGAGCTACCTGTTTTTCTGCCTCGGCATTAGCCTTTTGCTGTTCCAGCTTTCGTGCTTTGGCTCGGGCAATAGCGTCTTCGACTGCGGCTTTGCGCGGATCGAc < 5:1225808/137‑1 (MQ=11) gcgcTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGAGATCCGCGGAGCCCCCGGGTGATCTCGATACCCCAAATCCTCTTGCTGTTCCAGCTTGCGGGCTTTCTAAAGGCCGATAGCGGCTTCGCCGGCGGCGGTGGGCggcgcgcccgg > 1:1318921/1‑142 (MQ=2) ggcctgtgcgcGGGCAATAGCCGCTGCAACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGt < 2:463658/141‑1 (MQ=14) ttGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGCCCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCTGCTTCGACGGCCGGTTTTCGCGGATCCTCCTGtggtt > 7:1234640/1‑147 (MQ=14) gagcgcGGGCAAGAGCCTCGTCAACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTCGTGCGGCATTAGCCTGGTGCTGTGCCAGGTTGCGTGCTTTCGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGttctt < 7:1138831/145‑1 (MQ=11) gCTCGTGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCAACGAGTTGTTCTGGCTCGGCTTTACCCTGGTGCTGTGCGTGCTTGGGGGCTTGTGCTCGGGCAATAGCGGCTGCGACTGCGGCTTTGCGCGGATCGACCTGTtcttct < 2:937035/150‑1 (MQ=2) cTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGACATGTTGTTCTGGGTCGTAATTATCCTGTTGCTTTTCAAGATTGAGGGCTTTGGCACGGGAGATAGAGGATTCGAAGGAAGATTTGCTAGGATCAACATGTTATTATgg > 4:1544212/1‑151 (MQ=2) cGGGCAATAGCCGCTTCGACGCCGGCTTTGCGCGGAGCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGTCTTTGCGCGGATCGACCTGTTCTTCTGGtt < 8:339296/151‑1 (MQ=11) tAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGCTCGGCATTATCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCCATAGCGGCTTCGACGGCTGCTTTACGTGGATCAACAACTTTTTCTGGGTcgggagt > 3:168888/1‑145 (MQ=11) cggcggCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGAGATAGCGACTTCGCCCGCGGCTTTGCGCGTCACGAAGTGTTCTTCTGGTTCCGCATTACGCTGTTgatt > 1:783094/1‑148 (MQ=11) | AGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTG > DH1/2169448‑2169747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |