Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5770TG30.2% 167.4 / 36.5 144R661R (CGA→CGC) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base T (22/75);  new base G (4/38);  total (31/113)
Fisher's exact test for biased strand distribution p-value = 9.62e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 144 total aligned reads displayed.

GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCT  >  DH1/2169429‑2169724
                                                                                                                                                    |                                                                                                                                                   
gTTCTTCTGGTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCg                                                                                                                                                   <  5:824707/151‑1 (MQ=255)
gTTCTTATGGTACGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTc                                                                                                                                                    <  6:1076978/150‑1 (MQ=255)
 gtcttctGGCCCCGCATTAGCCTGTTGCTGTGCCAGCTGGCGGGCGTTCGCGCGTGCAATAGCCGCTCCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCgg                                                                                                                                                  <  2:1133588/150‑1 (MQ=17)
      gttgttcggctttAGCCTGTTGCTGTTCCTGCTTGACTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAAt                                                                                                                                             <  4:377440/140‑1 (MQ=25)
        tggccggCATAAGCCTGGTGCTGGTCCAGCTGGGGTGCTTGGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATGAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCGCGTTTGCGCGCTTTGGCTCGGGCAATa                                                                                                                                            <  2:973762/144‑1 (MQ=255)
        gggaCCGCATTAGCCTGGTGCTGTGCCCGCTTGCGTGCTTGGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCaa                                                                                                                                              <  7:1249589/145‑1 (MQ=255)
        ggTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTGGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAAt                                                                                                                                             <  4:886377/149‑1 (MQ=255)
        ggTACCGCATTAGCCTGTTGCTGTGCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCaa                                                                                                                                              <  5:976835/148‑1 (MQ=255)
           aCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCGGCTTCGACGTCGGATTTGCGAGGATGAAGCTGTTATTCTGGCTCGGGATTAGCCTGTTGGTGTTCCCGGTTGCGATATTTGGAACGGGCAATAGCgg                                                                                                                                        >  6:203001/1‑151 (MQ=11)
            ccGCATTAGCCTGGTGCTGTGCCAGCTTGCGTGCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGc                                                                                                                                       <  5:1201630/151‑1 (MQ=255)
             gtcATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTTCAATAGCCTCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCTCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCt                                                                                                                                      <  2:189083/149‑1 (MQ=255)
              gCATTAGCCTTTTGCTGTTCGAGCTTGAGTGCTTGTGCGCGTGCAATAGCCTCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCTCATTAGCCGTTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCtt                                                                                                                                     <  2:254050/151‑1 (MQ=25)
              gCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCtt                                                                                                                                     <  3:729631/151‑1 (MQ=255)
                   aGCCTGCTGCTGTTCCACCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                                 <  8:869666/150‑1 (MQ=255)
                    gCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcgg                                                                                                                               <  3:456247/151‑1 (MQ=255)
                     ccTGGTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                              <  1:526734/151‑1 (MQ=255)
                       tGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCAGCTTCGACGGCAGATTTACGAGGATCAACAACGTGTTCTGGGTCCTAATTATCCTGAAGATGTTCCAGTTAGATCGCTTTAGCGAGGGCTATAgatacatagacggcct                                                                                                                            >  4:980026/1‑136 (MQ=2)
                        ggtGCTGTTCCAGCTTGCGTGCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcg                                                                                                                             <  5:273103/147‑1 (MQ=255)
                        ggtGCTGGGCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACggcggc                                                                                                                           <  3:285401/149‑1 (MQ=255)
                           gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                        <  1:270581/151‑1 (MQ=255)
                           gCTGTGCCCGCTTGAGTGCTTTCGCGCGGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                        <  4:222632/151‑1 (MQ=17)
                             tGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCGGCTTCGACGGCAGGTTTGAGAGCGGAAGCGGGGTCTTCTGCATCCGCGTGAGACTGGGGCTGGTCCGGGTTGCGCGCGTGGGCGCGTGCAATAGCGGGTTGGGgggcggggttgg                                                                                                                      >  1:814768/1‑145 (MQ=2)
                              gTTCCAGCTTTGGGGCTNTGGCGCGTGCAATAGCCGCGGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGGTCCCGGTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                                                                                     <  5:780682/151‑1 (MQ=17)
                              gTTCCAGCTTTAGTGCGTGCGCGAGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                                                                                     <  5:786635/151‑1 (MQ=17)
                                tCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc                                                                                                                    <  5:159764/150‑1 (MQ=255)
                                 ccAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg                                                                                                                   <  7:236180/150‑1 (MQ=255)
                                   aGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCggct                                                                                                                >  1:861337/1‑149 (MQ=255)
                                    gCTTGCGGGCCTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCTATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                               <  2:545680/151‑1 (MQ=255)
                                     cTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCACCCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGTTTGCGCGCTTAGGCACGGGCCATAGCTGCTTCGACGGCAGGTTTTCGAGGCTc                                                                                                               >  5:391922/1‑150 (MQ=14)
                                       tGCGTGCTTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGa                                                                                                             <  6:1130626/150‑1 (MQ=255)
                                        gcttGCTTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAc                                                                                                            <  1:76431/147‑1 (MQ=255)
                                         ggTGCGTTGGCGCGGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                                          <  7:793746/150‑1 (MQ=255)
                                         cgggcgttGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                                          <  7:1044184/145‑1 (MQ=255)
                                         cGTGCGTTGGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                                          <  5:176031/151‑1 (MQ=255)
                                          cgcgcgtcccgcgGGCAACAGCGGCTTCGACGGATTCATTGCGCGGATCGACCTGTTGATCTGCATCCGCCTTAGCAGGTCCCAGTTGCCGGGTTCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtg                                                                                                         <  7:578775/142‑1 (MQ=2)
                                           tGCTTTTGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCTTTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAcc                                                                                                           <  8:1168424/148‑1 (MQ=255)
                                            gcgtttgcgcGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                       <  4:83065/145‑1 (MQ=255)
                                            gCTTTGGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                       <  1:577313/151‑1 (MQ=255)
                                            cccttGGCGCGTGCAATCGCCGCTGCCACTGCAGCTGTGCGCGGATCCACCTCGTCTTCTGGCTCCGCATTAGCCTGGTGCTGGTCGCGTTTGCGGGCGTTGGCGCGGGCAATAGCAGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                       <  3:820931/148‑1 (MQ=14)
                                              tttGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTAGCTCGGATTGGCTACGTCAATAGAAACTTCGACGGCGTCTTTGGTCGGATCggggtgttcg                                                                                                     >  8:326033/1‑142 (MQ=14)
                                                 ggCGCGGGCATTAGCAGCTTCTACTGCTGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTTCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt                                                                                                  <  6:24150/151‑1 (MQ=14)
                                                     ggTGGAATAGCCGCTTCGACTGCCGCTTTGCGAGGATCAACCTGTTCTTCTGGCTCCTCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCt                                                                                              <  2:327717/150‑1 (MQ=14)
                                                     cgTGCAATAGCCGCTTCTACTGCAGCTTTGCGCTGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCt                                                                                              <  4:583283/151‑1 (MQ=255)
                                                      gTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCtg                                                                                             >  4:426100/1‑150 (MQ=255)
                                                       ggCAATCGCCGGTGCGACGGCTGAGTTGCGGGGAGCACGGTGGTCTTCAGGCTGGGATTAAGCCTTTTGCTGTTCGCGTTTGCGCGCTTGGGCGCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCg                                                                                            <  5:107161/150‑1 (MQ=9)
                                                        gCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCg                                                                                            <  8:929938/150‑1 (MQ=255)
                                                           aTAGCCGCTGCGACGGGAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAt                                                                                        <  7:1056061/151‑1 (MQ=255)
                                                            acgCCGCGGCGACGCCCCCTGTGCGCGGCCCCACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAGCGACCTGTTGTTCTGGTTCCGCAtt                                                                                       <  7:317329/149‑1 (MQ=11)
                                                             aGCCGCTGCCACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCACCGCATTAGCCGGTTGCTGTTCCGGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa                                                                                      <  2:1233657/151‑1 (MQ=17)
                                                              gcctgttcttctgtaGCTTTTCGCTGATGTACCTGGTCTTCTGGCTCCGCATTATCCTGTTGCTGTTCCCGTTTTCGCGCTTTGGCTCTGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa                                                                                      <  2:61280/136‑1 (MQ=14)
                                                                 gcggcGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCt                                                                                  <  7:571368/147‑1 (MQ=255)
                                                                   ttCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATCGGCCTCTTGGTGTGGCTCCGCATTCGGCTGt                                                                                >  3:1272523/1‑151 (MQ=14)
                                                                        atgCAGCTTTGCGCTGATCCACCTGTTCTTCTGGCTCCTCATTAGCCTGTTGCTGTTCCCGTTTTCGGGCTTTGGCGCGGGCAATAGCCGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTg                                                                           <  2:1038802/149‑1 (MQ=14)
                                                                         ggCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCGCGTTTGCGCGCTTTCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGt                                                                          <  5:594585/151‑1 (MQ=255)
                                                                          gctgCTTTGCGCGGATCCACCTGGTCTTCTGGCTCCGCTTTATCCGGGTGCTGTTCCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTg                                                                           <  8:88745/146‑1 (MQ=14)
                                                                          gccgcgttccggtgATCTACCTCTTCTTCTGGCTCCGCTTTAGCCTGTTGCTGGTCCCGTTTGCGGGCTTTCGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGtt                                                                         <  8:735786/138‑1 (MQ=14)
                                                                          gCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTTGCCTGGTGCTGGTCGCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTg                                                                           <  8:839246/149‑1 (MQ=14)
                                                                          gCAGCTGTGCGCGGATCAACGTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCGGGTTTGCGCGCCTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGtt                                                                         <  5:994873/151‑1 (MQ=255)
                                                                             gCTTTCCGAGGATCAACCTGGTCTTCTGGCTCCGCATTAGCCTGCTGCTGTTCCCGTTTGCGCGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                      <  3:821524/151‑1 (MQ=14)
                                                                                ttGCTCGGATCATCCTGTTCTTCTGGCTCCTCATTATCCTGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGc                                                                    <  5:213632/150‑1 (MQ=14)
                                                                                ttGCGGGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCGCGTTTGCGCGCTTTTGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGc                                                                    <  1:166733/150‑1 (MQ=14)
                                                                                ttGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGTGTTGAGCGCAGCGCGCTGATCTGCTGGCTCGACTTTGGCGGGTTGCTGTTCGAggt                                                                   >  5:512972/1‑149 (MQ=17)
                                                                                ttGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGATTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCAACGGCAGATTTACGTGGATCAGCATCTGTTTCTGGGTCGTAATTATCCTgaagatcttcc                                                                       >  6:629666/1‑137 (MQ=9)
                                                                                 ttcgcgttgctaCCTGCTGTTATGGCTCGGGATTATCCTGGTGCTGTGCGGGTTTTTTGGCGTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCt                                                                   <  4:695922/139‑1 (MQ=2)
                                                                                 tgcggtgATCATCCTGTTCTTCTGGCTGCGCAATAGCCTGGTTCTTTTCCCGTTTTCGCTTTTGTGCGCGGGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGca                                                                   <  4:375127/144‑2 (MQ=9)
                                                                                 tGCGCTTATCTACCTGCTCTTCTGGCCCCGCATTAGGCGCATTATGGTCCCGAGTGCCGCCGTGGGCTCTTCCTATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCt                                                                   <  1:1036563/150‑1 (MQ=2)
                                                                                  gcgcTGATCCACCTGTTCTTCTGGCTCCTCATTATCCTGTTGCTGTGCGCGTTTGCTGGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTg                                                                 <  8:306131/151‑1 (MQ=14)
                                                                                   gtcgGATCAACCTGGTCTTCGTGCTCCTCATCACCCTGGTGCTGTTCGGGTTTTCGGGCGTTTGCGCGGGCAATAGCGGCGGCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGc                                                                <  3:484814/149‑1 (MQ=9)
                                                                                   cgcgGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGCTTGCGCACTTAGGAACCGCAAAGGTATGCTAGGCAGTCCGATATGCGCGGCTCGACGTGGGGTTCTGGCTCGGCATTAGACTGTTGCTGTGCCCGGTTgg                                                                >  7:699149/1‑150 (MQ=9)
                                                                                       gagctaCCTGATCTTCTGGCTCCGGTTTAGCCGTGTGCTGTTCGCGTTTGCGCGCTTTCGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGc                                                            <  3:845692/146‑1 (MQ=17)
                                                                                             ccTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCGATAGCTGCtt                                                                                                                                     >  2:55977/1‑72 (MQ=14)
                                                                                                  tcttctGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTATATAGGATCCGCACTCGGCTGATCGTCTTGCAGCTAGCCGGCTGTGGCACggg                                                 >  5:430155/1‑151 (MQ=14)
                                                                                                    ttctGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGAACGACCTCTTGTTCTTGATACGCATTACGCTGTTGCTGTTCCAGCTTGCGTGCTTAGGCACGGGcc                                               >  7:488169/1‑150 (MQ=14)
                                                                                                     tctGGGGCCGCATTAGCGGGTGGCTGGTCCCGTTTGCTGGCGTTGGCGCGGGCAATAGCCGCTTCGACTGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc                                                <  3:440281/149‑1 (MQ=14)
                                                                                                      gtgagcccGCATTAGCCGCTTCCTCTTCCCGTATCCGAGCTTTTTCTGTTGTAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAAt                                             <  4:395420/145‑1 (MQ=14)
                                                                                                       tGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgt                                                                                                        >  6:1150235/1‑91 (MQ=255)
                                                                                                        ggCTCCGCATTCCGCTGTTGGTGGTCGAGTTGGCGCGCTTGGGCTCGCGCACTAGCCGCTTCTACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAg                                           <  7:679354/151‑1 (MQ=14)
                                                                                                         gCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCGATAGCTGCTTCCACGGCAGGTTTACGGGGATccgcaacg                                                                                                        >  1:1105374/1‑82 (MQ=255)
                                                                                                          cTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCGATAGCTGCTTca                                                                                                                                   >  6:749291/1‑60 (MQ=255)
                                                                                                             cGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCGATAGCTGCTTCGACGGCGGATGTGATCCGCTCGCGGGGGAGGTCGCGTTCCTAATTAGCCTGTTGGTGTTCCAGCTTGCGTGCTATCTAAAGGGCGATAGCGGcg                                      >  3:287125/1‑150 (MQ=255)
                                                                                                               gtctaccctgTTGCTGTTCGCGATTTAGTGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                    <  4:197046/142‑1 (MQ=14)
                                                                                                                atcaGCCGGGTGCTGTGCCCGTTTGCGCGCGTTGGCTCGGGCAATAGCGGCTGCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                   <  5:596172/148‑1 (MQ=17)
                                                                                                                aagaGCCTGCTGCTGTGCGGGTTTGCGGGCGTGGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                   <  8:740363/148‑1 (MQ=11)
                                                                                                                  gaGCCGGTTGCTGTGCCCGTTTGCGCGCTTGGGCTCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGa                                  <  5:1006437/149‑1 (MQ=255)
                                                                                                                  caGCCGGGGGCTGTTCCAGTTTGCGAGCTTTGGCGCGCGCAATAGCGGCTGCGACGGCCGCTTTGCGCGGAGCGCGCGGCTGCTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                   <  5:203397/148‑1 (MQ=11)
                                                                                                                   aGCCTGGTGCTGGGCCGGTTTGCGGGCGTGCGCGCGGGCAATAGCGGCGGCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg                                <  7:383486/151‑1 (MQ=11)
                                                                                                                   aGCCGGTTGCTGTTCCCGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg                                <  7:33755/151‑1 (MQ=255)
                                                                                                                    gCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTCGCTCCGCATTAGACTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcgg                               >  7:939766/1‑151 (MQ=255)
                                                                                                                     cctggagcggtgcccGCTTCCGAGCTTTGGCTCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                              <  7:97981/139‑1 (MQ=11)
                                                                                                                     cctgTTGCTGTTCCAGGTTGCGCGCTTTGGCTCGGGAAATAGCGGCTTCGACGCCTGCTTTGCGCTTATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                              <  7:1151151/148‑1 (MQ=11)
                                                                                                                      cGGTTGCTGTTCCCGCTTGCGCGCTTTGGCTCGTTCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCTACCTGTTGTTCTGTCTCGTCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggcg                             <  2:859950/151‑1 (MQ=14)
                                                                                                                        ggtGCTGTGCCCGTTTGCGGGCGTGGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggcg                             <  5:1019769/147‑1 (MQ=14)
                                                                                                                        gctGCTGGGCCCGTTTGCTGGCTTTCGCGCGGGCAATAGCGGCGGCGACTGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggcgg                            <  1:1008613/148‑1 (MQ=14)
                                                                                                                           gCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCATCGAGGGCGGCGTTTCGCGGATCGCCCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCAGGGGGGATGGCGGCtgggcgggcggcgtg                        >  7:88453/1‑137 (MQ=14)
                                                                                                                             tGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGGTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCTGCTTCCACGGCTGCttttc                      >  5:586813/1‑149 (MQ=14)
                                                                                                                              ggtCCCGTTTGCGCGCGTTCGCGCGGGCAATAGCGGCTGCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTg                       <  7:993783/147‑1 (MQ=14)
                                                                                                                              gTTCCCGTTTGCTGGCTTTCGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgc                      <  4:297162/150‑1 (MQ=14)
                                                                                                                                     cccgcgctcccgcgCTCGGGCAATAGCCGCGTCTACTGCTGCTTTGCGCGGATCAACCTGTTGTTCTTGATCTGCATTAGCCTGTTGCTGTTCCAGGTTGCGTGCTTTCGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCg              <  6:1255955/138‑1 (MQ=11)
                                                                                                                                              ggaggCGCGGGCAATAGCGGCGGCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGttct     <  5:149814/148‑1 (MQ=11)
                                                                                                                                                 ggCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATAGAGCTGAAGAGCTGCCTACGCATTTCCATTTTGTTGTGCCCGCTTGCGATCTGTGGCTCGGGGTATATAAGATTCGACGGCGGGGTTGGGCGGGTCgggggggtggggg  >  3:181135/1‑139 (MQ=2)
                                                                                                                                                    |                                                                                                                                                   
GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCT  >  DH1/2169429‑2169724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑