New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | DH1 | = 2567931 | 155 (0.950) | 18 (0.110) | 14/290 | 18.7 | 10.4% | coding (658/720 nt) | tonB | protein TonB |
? | DH1 | 2830573 = | NA (NA) | noncoding (4/773 nt) | repeat_region | repeat region | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GTCGCGGTTGATCCTGAAGGAAAACCTCGCGCCTTACCTGTTGAGTAATAGTCAAAAGCCTCCGGTCGGAGGCTTTTGACTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > DH1/2567782‑2567931 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATACCGCTCAATTCG > DH1/2830573‑2830723 GTCGCGGTTGATCCTGAAGGAAAACCTCGCGCCTTACCTGTTGAGTAATAGTCAAAAGCCTCCGGTCGGAGGCTTTTGACTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGC < 1:151474/151‑1 GTCGCGGTTGATCCTGAAGGAAAACCTCGCGCCTTACCTGTTGAGTAATAGTCAAAAGCCTCCGGTCGGAGGCTTTTGACTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGC < 2:2581060/151‑1 CGCGGTTGATCCTGAAGGAAAACCTCGCGCCTTACCTGTTGAGTAATAGTCAAAAGCCTCCGGTCGGAGGCTTTTGACTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCACTTGCCTGGC < 1:2222124/150‑1 CGCCTTACCTGTTGAGTAATAGTCAAAAGCCTCCGGTCGGAGGCTTTTGACTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTT < 1:507994/151‑1 TTACCTGTTGAGTAATAGTCAAAAGCCTCCGGTCGGAGGCTTTTGACTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTAT > 2:1687790/1‑151 TTACCTGTTGAGTAATAGTCAAAAGCCTCCGGTCGGAGGCTTTTGACTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTAT > 2:1329693/1‑151 TTACCTGTTGAGTAATAGTCAAAAGCCTCCGGTCGGAGGCTTTTGACTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGT > 2:825532/1‑144 TTACCTGTTGAGTAATAGTCAAAAGCCTCCGGTCGGAGGCTTTTGACTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGT < 1:825531/144‑1 AGCCTCCGGTCGGAGGCTTTTGACTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTT < 1:1329690/151‑1 CTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGT > 1:1052440/1‑107 CTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGT < 2:1052441/107‑1 TTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACG > 2:1940508/1‑150 TTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACG > 1:822627/1‑150 TTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACT > 1:1667340/1‑151 CCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGC < 1:1940502/151‑1 GTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG > 2:1642313/1‑142 GTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG < 1:1642308/142‑1 TTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCA < 2:822628/150‑1 CAATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGT < 2:1667345/151‑1 ATCCCAC‑TGCCTGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGTAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT > 1:2599983/1‑150 C‑TGCCTGGCGGTAATGCCTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGCGCTGCCTCAGATTCAGGTTATGCCGC > 1:2312683/1‑151 CGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATACCGCTCAATTCG > 1:2002191/1‑151 CGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATACCGCTCAATTCG < 2:308899/151‑1 CGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATACCGCTCAATTCG > 2:479743/1‑151 CGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATACCGCTCAATTC < 2:1463374/150‑1 CGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATACCGCTCAATTC < 1:2291336/150‑1 CGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATACCGCTCAATTC < 1:2067724/150‑1 CGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGG > 1:411077/1‑134 CGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGG < 2:411076/134‑1 GTCGCGGTTGATCCTGAAGGAAAACCTCGCGCCTTACCTGTTGAGTAATAGTCAAAAGCCTCCGGTCGGAGGCTTTTGACTTTCTGCTTACTGAATTTCGGTGGTGCCGTTAATTTTAAACAGGATATTCACCACAATCCCAC‑TGCCTGGc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > DH1/2567782‑2567931 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATACCGCTCAATTCG > DH1/2830573‑2830723 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |