Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,818,1450TC24.6% 317.9 / 116.4 203intergenic (‑10/+53)argZ/argYtRNA‑Arg/tRNA‑Arg
Reads supporting (aligned to +/- strand):  ref base T (46/92);  new base C (12/33);  total (74/129)
Fisher's exact test for biased strand distribution p-value = 4.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01

Only 100 of 226 total aligned reads displayed.

CTAGTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAACTTACTTTA  >  NC_000913/2817995‑2818292
                                                                                                                                                       |                                                                                                                                                       
   cggCCTGCGGTTAACTCCGCTACCTCTTCGATACCTTCATTGCCGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAattta                                                                                                                                                      <  5:334475/149‑1 (MQ=255)
     gCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAatttat                                                                                                                                                     <  6:1392042/150‑1 (MQ=255)
     gCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAaattaat                                                                                                                                                    >  2:357616/1‑149 (MQ=255)
     gCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGTTTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAatttat                                                                                                                                                     <  1:1024357/150‑1 (MQ=9)
      ccTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAagttagtt                                                                                                                                                   >  5:599996/1‑151 (MQ=255)
      ccTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTAGGTTCGAAGCAGAGTAATCTATACAGCTGAGCTAAGGATGCATCGGG‑AAatttattt                                                                                                                                                   >  2:925679/1‑151 (MQ=14)
         gCGGTTAATTCCGCTAGCTCTTCGATACCTTCATTGCTGAAGCTTACGGAGAAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTAtttt                                                                                                                                                  <  4:575732/149‑1 (MQ=255)
          cGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTAct                                                                                                                                               <  1:301215/151‑1 (MQ=255)
          cGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAAATTAattt                                                                                                                                                  >  8:1535204/1‑148 (MQ=255)
            gTTAATTCCGATACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGAATCCGGGAGGATTCGAACCTCCGAACGCTCGGTTAGTACCCGAGTACTCTATCCAGCTGAGCTAAGCATGCATCAGG‑AAatataaaaaaatt                                                                                                                                              >  1:1662217/1‑142 (MQ=14)
              tAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTAATTTActgcat                                                                                                                                           >  1:979448/1‑149 (MQ=255)
               aaTTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTActgc                                                                                                                                             >  2:466705/1‑148 (MQ=255)
               aaTACCGCTATCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAatttattt                                                                                                                                                   <  1:955054/142‑1 (MQ=21)
                aTTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGCATGCATCGGG‑AAaattaatatcggaatcac                                                                                                                                         >  2:1073606/1‑138 (MQ=14)
                aTTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCACCTGAGCTACGGATGCATCGGG‑AAATTTATTTTAATGCTGa‑‑t                                                                                                                                       >  1:631380/1‑151 (MQ=255)
                   ccGCTATCTCTTCGATACCTTCATTGCTGAAGTTTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TAtt                                                                                                                                    <  8:381383/151‑1 (MQ=255)
                   ccGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TAtt                                                                                                                                    <  4:459917/151‑1 (MQ=9)
                   ccGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCGGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTCAGCTACTGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TAtt                                                                                                                                    <  7:1167913/151‑1 (MQ=255)
                   ccGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAAGTTACTTTACTGCAGA‑‑GAtt                                                                                                                                    >  7:1151247/1‑151 (MQ=255)
                   ccGCTACCTCTTCCATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TAtt                                                                                                                                    <  2:1011804/151‑1 (MQ=255)
                   actgatcatattCAATCCCTTCCTTGATGAATATATAGTAAAATATGGTTCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTACTGCAGa‑‑ttt                                                                                                                                     <  5:1161310/140‑3 (MQ=11)
                     gCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTAATTTACTGCAGA‑‑TAttt                                                                                                                                   >  2:513694/1‑149 (MQ=255)
                      cTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTAATTTACTGCAGA‑‑TATT‑T‑At                                                                                                                               >  1:770077/1‑151 (MQ=255)
                        aCCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑At                                                                                                                               <  3:890277/149‑1 (MQ=255)
                        aCCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGAAGCCCCCCG‑AAATTAAATTGACTCCTGa‑‑tagtcctac                                                                                                                               >  3:1419950/1‑144 (MQ=11)
                         ccTCTTGTATACCTTCTTTGCTGAAGTTTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATAcc                                                                                                                            <  6:15971/151‑1 (MQ=255)
                           tctTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTAGTTTACTGCAGa‑‑ttt                                                                                                                                     >  5:1024392/1‑140 (MQ=255)
                           tattCTATACCTTCATTTCTGAAGATTTCGGATAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTACTGCAGa‑‑ttt                                                                                                                                     <  8:1025024/140‑3 (MQ=14)
                            ctTCGATACCTTCATTGCTGAATTTTACGGATAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTACTGCAGA‑‑ttttttgata                                                                                                                              <  3:1526785/148‑7 (MQ=11)
                            cctCGATACCTTCATTCCTGACGATTTCGGAGAATATCGTGCATCCGGGATTATTCTAACCTCCGTCCGATCTGTTAGTAGCAGAGTACTCTATACAGCTGATCTACCGATGAAGCGGT‑AAATTTATTCTACTGCTGA‑‑TATT‑G‑ATACCg                                                                                                                           <  6:243567/147‑1 (MQ=11)
                              tCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGc                                                                                                                          <  4:1392523/148‑1 (MQ=255)
                               ggATCCCTTCATTGATGAAGATTTCGTAGTATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTACTGCAGATTTTTT‑G‑ATACCGcta                                                                                                                        <  6:30055/150‑1 (MQ=11)
                               cGATACCTTCATTGCTGAAGTTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTActg                                                                                                                                              <  6:98832/131‑1 (MQ=25)
                               cGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTActg                                                                                                                                              >  4:99066/1‑131 (MQ=18)
                                gATACCTTCATTGCTGAAGCTTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGctacta                                                                                                                     <  3:1227828/151‑1 (MQ=255)
                                gATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGctacta                                                                                                                     <  7:1371551/151‑1 (MQ=255)
                                gATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAAATTAATTTACTGCTGA‑‑TATT‑T‑ATAAAGctata                                                                                                                      >  1:1116210/1‑148 (MQ=11)
                                  aaccatacttGCTGCATATTTAGTATAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTACTGCAGATTTTTT‑G‑AAACCGctacta                                                                                                                     <  7:770027/143‑1 (MQ=14)
                                   aCCTTCATTGCTGAAGTTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAg                                                                                                                  <  5:476370/151‑1 (MQ=25)
                                   aCCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTaaa                                                                                                                   <  3:1016386/150‑1 (MQ=18)
                                    cgttCATTTATGAATATTTCGTATTATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTACTGCAGATTTTTT‑G‑ATACCGCTACTaaa                                                                                                                   <  8:770205/149‑1 (MQ=14)
                                       taatatatcaataTTTAGGATAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTACTGCAGATTTTTT‑G‑ATACCGCTACTAAAg                                                                                                                  <  6:1111333/137‑1 (MQ=14)
                                       tCATTGCTGAAGTTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCTAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCa                                                                                                               <  4:1161851/150‑1 (MQ=255)
                                        catttatGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTACTGCAGATTTTTT‑G‑ATACCGCTACTAAAGcc                                                                                                                <  5:1148024/144‑1 (MQ=11)
                                        cATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCat                                                                                                              <  1:1257843/150‑1 (MQ=255)
                                        cATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTACAACCGGAGCCCCAACCGGTGGTCGCCGAGTAGTCTGGACAGCTGAGCTACGGATGCATCCCG‑ATATTAAGTGTACTGCAGA‑‑TATT‑G‑TTACAGctatgaaatcgtct                                                                                                             >  4:1249870/1‑140 (MQ=9)
                                        aatttaggAATATTTCGTATAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTACTGCAGATTTTTT‑G‑ATACCGCTACTAAAGccg                                                                                                               <  8:600184/144‑2 (MQ=14)
                                        aattgaggAATATTTAGGAAAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTACTGCAGATTTTTT‑G‑ATACCGCTACTAAAGcc                                                                                                                <  4:1641219/143‑1 (MQ=14)
                                            tctcaataTTTCGTACTATATGTTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTACTGCAGATTTTTT‑G‑ATACCGCTACTAAAGCCgtat                                                                                                            <  2:1397583/143‑1 (MQ=14)
                                            gCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCaa                                                                                                         <  4:881430/151‑1 (MQ=255)
                                               gAAGTTTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAg                                                                                                        <  7:943229/149‑1 (MQ=255)
                                               gAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAacttactt                                                                                                                                                   <  4:1072312/110‑1 (MQ=255)
                                                aaGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTTCTGA‑‑TATT‑T‑ATACCGctact                                                                                                                      >  7:1436947/1‑134 (MQ=255)
                                                aaGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTaa                                                                                                     <  7:409675/151‑1 (MQ=255)
                                                   gttacGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTa                                                                                                                                                 >  1:1185026/5‑108 (MQ=21)
                                                                ttcgtatttcGGTAGTATTCGAACGTCCTACCGCTCGGTTCGTAGCCTAGTACTCTATCCAGCTGAGCTAGGTATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCg                                                                                      <  1:794257/141‑1 (MQ=14)
                                                                 ggTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCgg                                                                                     <  3:646129/150‑1 (MQ=40)
                                                                 ggTGCAGCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGATCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGATATGGTGCATCCggg                                                                                    <  8:1625453/151‑1 (MQ=255)
                                                                  gTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑g                                                                                                                                  <  8:1190057/105‑1 (MQ=40)
                                                                       tCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATAGCGCTACTAAAGCCAGATAAAGTAATAGATGTTGCATACGGGAGGAtt                                                                              >  3:1462300/1‑151 (MQ=14)
                                                                          gggAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑t‑ataac                                                                                                                            >  2:699258/1‑100 (MQ=255)
                                                                          gggAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATAcc                                                                                                                            <  3:700092/102‑1 (MQ=40)
                                                                          gggAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAAATTAGTTTACTGCTGA‑‑TATT‑T‑ATACAGCTACAAAAGCCATATCAACTAAGAGATCGTGCAACACGGAGGAtaac                                                                            >  3:1650376/1‑147 (MQ=11)
                                                                           ggaggaTTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑T‑ATAACGCTACTAAAGCCATATATAGTAAGAGATGTTGAAtaggcgagaattatac                                                                          >  6:684263/1‑136 (MQ=14)
                                                                            gaggaTTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACATCTGa‑‑ta                                                                                                                                      >  6:867871/1‑92 (MQ=255)
                                                                              ggaTTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATAc                                                                                                                             >  5:1458457/1‑97 (MQ=255)
                                                                              ggaTTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATAc                                                                                                                             <  8:1459237/97‑1 (MQ=255)
                                                                                aTTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAatttatt                                                                                                                                                    <  4:1011704/76‑1 (MQ=37)
                                                                                 ttCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAAATTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCAGATCAAGTAAGAGATGGTGCATCCGGGAGGAtaagactcgccg                                                                    >  5:797796/1‑140 (MQ=11)
                                                                                   cGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGGTGA‑‑TAtt                                                                                                                                    >  7:582643/1‑87 (MQ=255)
                                                                                    gAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGa‑‑t                                                                                                                                       <  3:292994/83‑1 (MQ=40)
                                                                                    gAACCTCCGACCGCGCGGGTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAACATATGGTGCATCCGGGAGGATTCGAACCTCCGAcc                                                                 <  3:473845/151‑1 (MQ=255)
                                                                                      aCCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑T‑ATACAGCTACTAAAGCCATATCAAGTAAGAGATGGTGAATCAGCGAGGAttatacacgcgtagcgc                                                               >  2:1652187/1‑136 (MQ=14)
                                                                                        cTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAAGTTATTGTAGTGGTGA‑‑TATT‑C‑ATACGGGTACTAACGCATTTGAAATTAAGAGATGGTGCTTCCGGGCGGATTCgtagccgacccgggg                                                              >  5:1561928/1‑137 (MQ=2)
                                                                                        cTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTAATTTACTGCAGA‑‑TATT‑T‑ATACAGCTAATAAAGACAAATCAAGTAACAGATAGTGAATAACGGAGGATTAGACGCGCCGAcccaa                                                              >  1:733751/1‑147 (MQ=11)
                                                                                            gACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATCGTGCATCAGCGAGGATTAGACGCTCCGagccgatcgat                                                         >  7:690085/1‑141 (MQ=14)
                                                                                                gCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATAACGCTAGTAAAGCGATATCAAGTAAGAGATGGTGAATAAGGGAGAATTATAAACTCCGAGCggctcgatcgtc                                                     >  6:1316811/1‑140 (MQ=14)
                                                                                                   cGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑T‑ATACCGCTACTAAAGACATATCAAGTAAGAGATGGTGCATCACGGAGGATTAGACCCGCCTACCCCAGCGTTAGTAGcc                                                  >  3:1044555/1‑151 (MQ=14)
                                                                                                   cGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAAATTATTTTACTGCTGA‑‑TATT‑G‑ATAGAGCTACTAAAGCCAAATCAAGTAAGAGATGGTGCAACCGCGAGGATAAGACCCGCCGAcccgaccgctccgagcc                                                  >  6:381783/1‑136 (MQ=11)
                                                                                                        cGTAGCAGAGTACTCAATCCCGCTGATCTACGGAGGCATCGGG‑AAAGTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAACAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGt                                              <  2:1488134/150‑1 (MQ=18)
                                                                                                                               agggttacttaggtaTCGGG‑TCATTTATTTTACTGTTGA‑‑TATT‑C‑AAACCGCTAATAACTCAATATCTAGTATAAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGAt                      <  3:1364715/137‑1 (MQ=17)
                                                                                                                                ggtttacttaagCAGCGGG‑TCATTTTATTTACTGCTGA‑‑TATT‑G‑AATACGCTAATTCCTGAATATCTAGTAATATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGAt                      <  5:37445/139‑1 (MQ=2)
                                                                                                                                 ccgatatgaagCATGGGGAAAACTTATTCTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGAt                      <  5:576123/140‑1 (MQ=18)
                                                                                                                                      cGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGACGCTCCGCCCGGGGGGTTCGTCGCCGAGTCCTCTATCCCGCTGAGCTCCggcggccgcgg               >  3:45303/1‑142 (MQ=18)
                                                                                                                                       ggATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGcacatcggtagagccc              >  4:812081/1‑136 (MQ=255)
                                                                                                                                        gttGCATGGGG‑ATATTTATTTTCCTCTTCA‑‑TATT‑GTATACC‑TTACTATATCCAGATATAGTACAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCggg              <  7:1661131/148‑1 (MQ=2)
                                                                                                                                        gATGCATCGGGAAAACTTATTCTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTCGAACCTAAGACCCAACCCTTCGTAGCCGATTACTCTATCCAGATGAGCTACCGAtagaacgg               >  8:576412/1‑143 (MQ=11)
                                                                                                                                         tagggagtggcttatttaatttaCTGCTGA‑‑TCTT‑C‑TTACCGTTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCAt                  <  5:1115656/133‑1 (MQ=18)
                                                                                                                                            tccgctctaaaCTTATTGTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGaaa           <  4:320201/142‑1 (MQ=255)
                                                                                                                                            tcagagctaaaGTTATTCTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGaaa           <  5:1274085/142‑1 (MQ=255)
                                                                                                                                            cATGGGG‑TAATTTTTTTTACTCCAGA‑‑TATTCG‑ATACC‑TTACTTTCTGAATATCTAGTAATATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAact         <  2:1563749/151‑1 (MQ=11)
                                                                                                                                             cagaggcaaaTTTATTTTCCTCATCC‑‑TATT‑C‑ATAACCCTAATACAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAact         <  5:447077/144‑1 (MQ=17)
                                                                                                                                              tCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAactt        >  7:271974/1‑150 (MQ=255)
                                                                                                                                              tCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGATCGGATCGTAGCCGAGTACTCTATAAAGCTGAGCTACGGATGCaaatggagattgc       >  8:1112035/1‑139 (MQ=21)
                                                                                                                                              ggggg‑AACTTTATTTTACTGCATA‑‑AAGT‑T‑ATATCGCTTCTTCTGAGATATTACGTACCAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCaaatgg              <  5:1111293/142‑6 (MQ=2)
                                                                                                                                               cGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGaagagaac      >  7:1376624/1‑145 (MQ=255)
                                                                                                                                                tgcgatctttattaTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAactta       <  7:1494392/143‑1 (MQ=255)
                                                                                                                                                 ggaaaaCTTATTCTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGATCGGt                                                          >  1:1166087/4‑98 (MQ=14)
                                                                                                                                                   aaaaCTTATTCTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTACGACCGAACCGTTCGTAGCCGAGTACTCTATCCAGCt                                 >  1:1436627/2‑121 (MQ=18)
                                                                                                                                                    aaaCTTATTCTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTCGAACCAAAGACCCAACCGTTAGTCGCCGAGTAATCTAACCAGCTGAGCTACGGATGCaaagcgata           >  6:319563/1‑134 (MQ=14)
                                                                                                                                                       |                                                                                                                                                       
CTAGTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATT‑G‑ATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAACTTACTTTA  >  NC_000913/2817995‑2818292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑