BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,270,167	0	C	G	25.1%	296.2 / 36.6	227	intergenic (+565/+458)	yhaC/garK	pentapetide repeats‑related protein/glycerate kinase I
Reads supporting (aligned to +/- strand): ref base C (78/56); new base G (43/2); total (161/66)
Fisher's exact test for biased strand distribution p-value = 7.13e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 228 total aligned reads displayed.

TTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGC  >  NC_000913/3270019‑3270317

          gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAAGTAAACCAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGGTATAGAGTAGTGGAAAGGCATTAATCTTTAAGGCCCCCCaa                                                                                                                                               >  3:167317/1‑150 (MQ=11)

           ggcccgccccAGCCATTCATCATTCAGCCCCTCCAAAACCAAAAACCCGCCGAAGCTGTTTTTTACGTAAAACAGGTTAACCTGACCGATAAGCCGCCTTCTTTTGGGTATAGCGGCGTTGACAGGCATTCATCTTTCTGCCCCTCCaaaa                                                                                                                                             <  5:1635832/142‑1 (MQ=11)

                   agaGTCAATCATCTTTCTTCACATTCAAAACCAAAATTCCGCTCAAGGTGGCTTTTACGTTATTCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAc                                                                                                                                     <  2:85999/149‑1 (MQ=11)

                        cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCTTGGCAAGGCAATAAAGGTTAAGCGCCCCCAAAACCAAAAAcccccc                                                                                                                                >  4:494110/1‑151 (MQ=11)

                         attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCATTGTGCTCCGTCAAAAACAAAAACccgc                                                                                                                                 >  5:391776/1‑149 (MQ=11)

                          ttcatCTTTGTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGCGTCGTGGACAGTCATTCATAGTTAGGCACCAGCAAAAGCAAAAACccgc                                                                                                                                 >  1:702912/1‑148 (MQ=11)

                             gaataactggcacTCAAAAAGCTGAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAg                                                                                                                            <  2:664641/138‑1 (MQ=11)

                             atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCGAGTCCATCATCGTTGTGCCCGGACAATACCAAAAACccgcggcagg                                                                                                                           >  6:362723/1‑145 (MQ=11)

                               atatcgcgcccTCAAAAAGCTCAAACCCGCCGTCGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAGAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑Cg‑g                                                                                                                       <  5:1532045/143‑1 (MQ=11)

                                tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGG‑TTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGGGATAGCGTAGTGGACAGGCCATCAAGTTTGTCCCGCGACAAAACCAAAAACCCGCGGAAggacgg                                                                                                                       >  8:1172122/1‑146 (MQ=11)

                                 ttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTAGGGTATAGCGACGAGGAGAGTCATTCATCATTCTCCCCCTCCAAAACCAAAAAccccgcgcaggccgg                                                                                                                       >  1:1244362/1‑139 (MQ=11)

                                    tGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTGGGGTATAGCGTCGTGGCGAGTCAATCATCTTTCGGCACCGTCAAAACCAAAAACCCGCCGAAG‑cccgttgt                                                                                                                   >  2:1538401/1‑144 (MQ=11)

                                    tGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTAGGGTATAGAGACGAGTAAACTCATACAAAATTAAGCACCAGCAAACTCAAAAACCCGCCGAAG‑cacgatat                                                                                                                   >  1:1063286/1‑144 (MQ=2)

                                      ccccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCGAGGCCTTCATGGTTGGGCGCCGGCAAAACCCAAAAACCGCCGCAG‑Cg‑gggggttt                                                                                                                >  5:804203/1‑145 (MQ=11)

                                        ccTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTAGTCGCCAGTCCATAATCGTTCGGCCGCTACAAAACCAAAAACACGCCGAAG‑CG‑GGTTTTTACg                                                                                                              >  3:1033619/1‑151 (MQ=11)

                                         cTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGGCAGTCATTCATGTTTGTGCCCCGCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTTCgg                                                                                                             >  5:1113956/1‑150 (MQ=255)

                                         cTCCAAAAGCAAAAACCCGCCGAAGCGGCTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTGTGGGGTATAGCGTCGTCGTCCGGCAGTCTTGATAATCCGCCTGCAAAACCAAAAACCCCCCGCAggccggtgttacgg                                                                                                               >  4:1169122/1‑138 (MQ=2)

                                            cAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGGCCTTCATCTTTGGGCGCCGCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTaa                                                                                                           >  4:773549/1‑150 (MQ=11)

                                             aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCGAGGGAGTCATGGTTCGGCCCCGCCCAAACCAAAAACCCGCCGCAG‑CC‑GGGGTTTACGTAAAt                                                                                                         >  5:695664/1‑151 (MQ=11)

                                               aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGGTTTCTTTTGGGTATAGCGTCGTGGCGAGTCCTTCATCGGTGGGCGCCGACAAAACCAAAAACCCGCCGCAG‑CG‑GGTTGTTTCGGAAATcc                                                                                                       >  5:855901/1‑150 (MQ=11)

                                                aGCACAAACCCGCCGCACCGGGTTATTACGTAAACCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAg                                                                                                      <  7:1340395/151‑1 (MQ=255)

                                                 gcccaacgccgccgGACCGGGTTATTACGTAAATCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAgg                                                                                                     <  7:1449501/143‑1 (MQ=11)

                                                   aaaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTCAGTGATGTTTGTGCCCCGGCAAAAACAAAAACCCGCCGAAG‑CG‑GGTTTTTTCGTAAATCACGTg                                                                                                   >  3:379338/1‑151 (MQ=11)

                                                    aaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGGCAGTCATTCATCTTTGTGCCCCGACAAAAGCAAAAACCCGCCGAAG‑CG‑GGGTTTTTCGTTAATCAGGTgc                                                                                                  >  4:1503280/1‑150 (MQ=11)

                                                       aCCCGCCGTATCGTTTTTTTACGTACAGCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAGAGTCATTCATCTTTCTGCCACTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAAc                                                                                               <  2:395133/151‑1 (MQ=11)

                                                            ccttaccGGTTTTTTACTTAAAACAGTTCAATCTTACCGATAAGCAGCTTTTTTTTGGGTATATTGTCGTGGACAGTCATTCTTCTTTATGCCCCTCAAAAATCAAAAACCCGCCGAAT‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGAcc                                                                                          <  1:646173/145‑1 (MQ=255)

                                                            ccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCAATCAAAATTCTGCCCCCGCAAAACCAAAAACCCCCGGAAG‑AG‑GGTGTGTACGGAAATAATGAGAAAATTAcc                                                                                          >  7:984528/1‑151 (MQ=11)

                                                            ccgAACCGTGTTATTACGTAAACCAGGTAACACTGAGCGATAACGCGCTTTGTTTTTGGTATAGTGTCGGCGACAGTCCGTCATCTTTCTGCCACTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGAcc                                                                                          <  5:98731/151‑1 (MQ=11)

                                                              tcagttttttattACGTAAATGAGGTTAATGTTACCTATAAGCGTGTTTCTTTTGTTTATAGTGTCTTGGAGAGTGATTCATCTTTCTGCTCCTCCAAAATTAAATACGCGCGTAAG‑AT‑GGTTTTTACGTAAATCAGGTGAAACTGAc                                                                                           <  6:216730/137‑1 (MQ=255)

                                                              gAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGTCCAGTCATTCATGTTTGGGCACCTGCAAAAGCAAAAACCCGCAGAAG‑CG‑GGTTTTTTAGTTAATCAGGGGATACtttccgt                                                                                        >  7:360220/1‑145 (MQ=11)

                                                              gAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTAGTGTATAGAGTATAAGAAAGTCAATCAAAATTAAACACCAACAAAAACAAAAACCCCCATCAG‑AA‑GATGTTTACATAAAACAGGTGaaaaatacagt                                                                                        >  6:54258/1‑143 (MQ=2)

                                                               attcGGGTTTTTACGTAATCTAGGTTAAAGTGTCCTATATTTCGCTTTATTTTGGTTTTAGGTTCTTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGGAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGAt                                                                                       <  2:379604/148‑1 (MQ=11)

                                                                aGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTGATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAG‑CG‑GGTTTTTACGTAAATCAGGTGCAACTGACCGAt                                                                                       >  7:206674/1‑150 (MQ=255)

                                                                aGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGGCATTCATCTTTATGCGCCAACAAAAACAAAAACCCCCCGAAG‑CG‑CGTTTTTAAGTAAATCAggggcaagagccccta                                                                                       >  6:1558704/1‑136 (MQ=11)

                                                                 gCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTAGTGGAAAGTCAATAAAAATTAAACACCAACAAAAACAAAAACCCGCAGCAG‑AC‑CGTTTATAACTAAATCAACTCAAAATTACCGATa                                                                                      >  1:448392/1‑150 (MQ=2)

                                                                  cGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCAAGTCATTCATAATTGAGCCCCAACAAAAACAAAAACCCGCCGCAG‑AA‑CGGTTTTACGGAAATCAGGTGAAACttccccata                                                                                      >  6:548242/1‑141 (MQ=11)

                                                                  cGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTAGGGAATAGCGTCGTGGCAAGTCAATCAAAATGAAGCCCCTAAAAAAAAAAAAACCCGCCGAAC‑CA‑CGTATATAACTAAATCACGGGAAAATGccccctacc                                                                                    >  1:1234385/1‑145 (MQ=2)

                                                                   gggTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCGTGGAGAGTCAATCATCTTTAGGCGCCAACAAAAGCAAAAACCCGCGGAAG‑CG‑GGGTTTTACGTAAATGAGGTGAAAATTACCGATGAGc                                                                                   >  8:193758/1‑151 (MQ=11)

                                                                     gTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTGTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTAAGTAAATCAGGTGAAACTGACCGATAAGCCg                                                                                 >  4:736271/1‑151 (MQ=25)

                                                                      tttttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTCATTCATCTTTGTGCCCCCCCAAAAGCAAAAACCCGCCGCAG‑GG‑GGGTTTTACGTAAATCAGGTGAAACTGCCCGATCAGCCgg                                                                                >  4:1452816/1‑151 (MQ=11)

                                                                      tttttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTCAATCATATTTAGTCACCTACAAAAACAAAAACCCGCCGCAG‑AG‑CGTTTTTACCAAAATCAAGGGAAAATTTCCCATAAGCCgg                                                                                >  2:121489/1‑151 (MQ=2)

                                                                         ttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTCATTCATCTTTATGCCCCTCCAAAAGCAAAAACCCCCCGAAC‑CG‑GGTTTTTACGTAAATCAGGTGAAACTTGCCGATAAGCCggggt                                                                             >  3:1389806/1‑149 (MQ=11)

                                                                           aCGTACATCAGGTTAAACTTACTGATAAGCCGCTTTCTTTTTTGTATAGTTTCGTGTACAGTCATTCATCTTTCTGCCCTTCTAAAATCTAAAACCCGCCGAAT‑CG‑GGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTc                                                                            <  2:670050/150‑1 (MQ=11)

                                                                            cGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAAAGTCATTCATGTTTAGGCCCCTACAAAAACAAAAACCCGCCGAAG‑AG‑GGTTTTTACGTAAATGAGGGGAAACTTCCCGATAAGCCGGGTtgtg                                                                          >  2:1140290/1‑151 (MQ=14)

                                                                              tAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTAAGCCCCGGCAAAAACAAAAACCCGCCGCAGACG‑GGTTTTAAGGT‑AATCAGGTGAAACTGGCCCGTAAGCCGGGtggtgtg                                                                        >  6:1453773/1‑145 (MQ=14)

                                                                                aaCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGGCGATCCTCTTTCGGCCCCGGCAAAAGCAAAAAACCGCCGCAG‑CGCGGTTTTTCCGT‑AATCACGGGCAACTTCCCGATCAGCCGGGTTCTGTCGt                                                                      >  7:1180769/1‑151 (MQ=9)

                                                                                   cAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTCATTCATGTTTGGGCGCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑CGGTTTTACGGAAATCACGGGAAAATGACCCATAAGCCGGGTTCTGTCGTggc                                                                   >  7:339789/1‑150 (MQ=14)

                                                                                      gtgtattattatgttAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGAGAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa                                                                 <  6:1099714/136‑1 (MQ=14)

                                                                                      gtaaaaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACCGTCATTCGTCTTTCGGCCCCTCCAAAAACAAAAACCCGGAGACG‑CG‑GGTTTTTTCGTAAAAAAGGTGAAACTGACCGCTAGGCGGGGTTgtgtggggggggg                                                                >  5:143138/4‑142 (MQ=11)

                                                                                        gAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAAGCAAAAACCCGCCGCAG‑CG‑GGTTTTTAAGTAAATCAGGTGCAAATGCCCGATAAGCCGGGTTCTGTAGTggcccgtg                                                              >  5:248122/1‑145 (MQ=14)

                                                                                        gAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTAAGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTGTGTCGTGGACAGtc                                                              >  8:411775/1‑151 (MQ=255)

                                                                                        aaaccTGACCGATAAGCCGCTTTCTTTTGGGTATTTTGTCTTGTACAGTCATTCATCTTTATTCCCATCCAAAAGCAAAAACCCTCCGAAT‑CG‑TGTTTTTACTTAATTCATGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt                                                               <  8:143245/146‑1 (MQ=14)

                                                                                          aaattatatatcatacGCTTTTTTTTTTGTATAGGGTCTTCGTATGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtca                                                             <  2:43455/135‑1 (MQ=14)

                                                                                           cggcaCCGACCAGCGGCTTTCTTTTGGGTATAGGGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑TGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcatt                                                           <  3:477228/147‑1 (MQ=17)

                                                                                             tGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTGTTTACGTAAATCAGGTGAAACTGACCGATAAGACGGGTTCTGTCGTGGACAGtcattc                                                          >  6:776964/1‑150 (MQ=255)

                                                                                              gACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGAAAGTCATTCATCTTTGAGCCCCAACAAAAACAAAAACCCGCAGCAG‑AC‑CGGTTTTAAGTAAAACAAGTGAAAATTACCCAAAAAACGGGTTGTGTTGGGGATAggctatta                                                         >  2:501828/1‑143 (MQ=0)

                                                                                              gACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCAACTTTGTTCCCCTACAAAAGCAAAAACCAGCCGACG‑CG‑GGTTTTTAAGTAAATCAGGTGAAACAGACCGATAAGCCGGGTTATGTCGTGGACAGtgattaat                                                        >  4:188420/1‑151 (MQ=14)

                                                                                              caCCGATAAGCCTTTTTTTTTTTTTTATATCGTCGTCGACAGTTATTTAAATTTTTGCCTATACTATATCAATAACCGTCGGTAT‑TG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattc                                                          <  6:1256497/148‑1 (MQ=12)

                                                                                               aCCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATATTTAAGCCCCAACAAAAACAAAAACCCGCAGAAG‑AC‑CGTTTTTAAGTAAAACAGGTGAAAATTACCCAAAAGCATGGTTCTTTAGTGTAAAGtcaatgat                                                        >  6:1523674/1‑145 (MQ=2)

                                                                                                ccGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTACTCTTTAGGCCCCTACAAAAGAAAAAACCCGCCGAAG‑AG‑GGGTTTTAAGTAAATCAGGTTAAAATGACCGATAAGCAGGGTTCTTTCGTTGCCAGtcattactct                                                      >  5:558575/1‑146 (MQ=14)

                                                                                                actataatattctttatttTGTTTATATAGTCGTCGATATTCATATATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCt                                                      <  2:804103/140‑1 (MQ=17)

                                                                                                  gATAAGCCGCTTTCTTTTGGGTATAGTGTTGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACAAGCCGAAG‑CC‑GGTTTTTACGTAAAACAGCTGAAACTGACCGATAAGCCGCTTTCTGTGGTGGAAAgagaataataaa                                                     >  1:358225/1‑139 (MQ=1)

                                                                                                  gATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGGCAGTCATTAATCTTTCTGCCCCTCCAAAAACAAAAAACCCCCCAAC‑CG‑GGGTTTTACGTAAATCAGGTGAAACTGACCGAAAAGCCGGGTTCTTTCGTGGCCAGGGATTCAtatat                                                    >  3:767049/1‑150 (MQ=14)

                                                                                                  gATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTGTGGCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcagtcatgt                                                      >  6:833619/1‑147 (MQ=255)

                                                                                                  gATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCACCTACAAAATCAAAAACCCGCCGAAG‑AG‑GGTTTTTAAGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCt                                                      >  8:845745/1‑149 (MQ=255)

                                                                                                   aTAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTATGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CC‑GGTTTTTAAGTAAATCACGTGAAAATGCCCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAgg                                                   >  2:13046/1‑151 (MQ=18)

                                                                                                          gcgttctctTGGGTATAGCGTCGGGGACATTCATTCATATATCTGCACCTCCAAATCCAAACACCATCCTTAG‑CG‑GTTTTTTACGTAAATCAGTTGATAGGTATCTATATTGCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCaa                                            <  7:1083985/148‑1 (MQ=16)

                                                                                                            tttctttTGGGTATAGCGTCGTGGCCAGTCATTAATCTTTCTGCCCCTCCAAAAGCAAAAACCCACCGAAG‑CG‑GGTTTTTAAGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTGGGGGACAGTCATTCATCTAGGCCAGCAATc                                          >  7:627207/1‑151 (MQ=18)

                                                                                                             ttctttTGGGTATAGCGTCGTGGACAGTCATTGATCTTTGTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGGCAGTCATTCATATAGGCCAGCAATCg                                         >  3:54623/1‑151 (MQ=255)

                                                                                                               ctttTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGCCAGTCATTCATCTAGGCCAGCAATCGcg                                       >  7:604775/1‑150 (MQ=255)

                                                                                                               ctttTGGGTATAGCGTCGTGGAAAATAATTAAAATTTGTGGCCCTCCAAAAACAAAAAACCCCCGCAG‑CG‑GGTTTTTACCTAAATAAAGTGAAACTGACCGAAAAGCCCGGTTATGTCGTTGACACGCATTGATAAAGGCCAGCAAtatc                                        >  8:1624741/1‑147 (MQ=255)

                                                                                                                     ggTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGCCAGTCATTCATCTAGGCCAGCAATCGCTCACTgg                                 >  7:12544/1‑151 (MQ=255)

                                                                                                                      gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGCTAAGCCGGGTTCTGTCGGGGCCAGGCATTCATCTTGGCCAGCAATCGCTCACTGGc                                >  1:932794/1‑151 (MQ=255)

                                                                                                                      gTATAGCGTCGTGGACAGTCATTCATATTTATGCCCCTAAAAAAGCAAAAACCCCCCGAAG‑CG‑GGTTTTTACGTAAATAAGGTGAAACTGACCGATAAGACGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGc                                >  6:1510960/1‑151 (MQ=21)

                                                                                                                       tataGCGTCGTGGACAGTGATTCATATTTCTGACCCGGCAAAAGCAAAAACCCGCCCAAG‑CG‑GGTTTTTACGTAAATAAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAATGATTAATCTAGGCCAGAAATAGCGCaatttc                                >  2:249301/1‑145 (MQ=17)

                                                                                                                       tataGCGTCGTGGACAGTCTTTAATCTTTCTGCCCATCCAAAAGCAAAAACCCGCCGAAG‑CG‑GCTTTTTACGTAAAAAAGGTGAAACAGGCCGATAAGACGGGTTCTGTCGGTGTCAGTCAGTCATATTTGCCAGGAATCGCTACCTgggg                               >  6:1297393/1‑149 (MQ=9)

                                                                                                                         taGCGTCGTGGACAGTCATTCATATTTGTGCCCCAACAAAAGCAAAAACACCCCGAAG‑CG‑GGTTTTTAACTAAATAATGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTGATTGATCAAGGCCCGCAAACGGTCACAGGc                                >  6:301219/1‑148 (MQ=255)

                                                                                                                          agggtagttgtgtgTCATTCATCTTTCTGCCCCTCCATAGCCTAATGGCCGCGGACT‑TG‑TGTTTTTAGGTAATTCCCTGTAACCCGACCTATATGCCGGGTTGTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCa                             <  7:1140071/137‑1 (MQ=255)

                                                                                                                           gCGTCTTTGACAGTAATTCATCATTCTGGACGTCCAAAAGCAATAAGACGCGGCAT‑CT‑GGCTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAag                           <  3:289334/151‑1 (MQ=25)

                                                                                                                           gCGTCGTGGACAGTCATTCATCTTTCTGCCCCGACAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGAAAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCa                             >  1:1157125/1‑149 (MQ=255)

                                                                                                                            cgtcgtGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTATGCCAGCAATCGCTCACTGGCTCa                             >  4:1537471/1‑148 (MQ=255)

                                                                                                                             gtcgtGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagc                          >  4:80069/1‑150 (MQ=255)

                                                                                                                               tgtgtACAGTCATTCATCTTTCTGCCAATACAAAAGTAAAATCCCGCCGAAG‑GT‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGTTTGTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagcag                        <  1:177851/149‑1 (MQ=21)

                                                                                                                               cgtGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagcagc                       >  3:191703/1‑151 (MQ=255)

                                                                                                                                gtGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGcc                      >  5:1334637/1‑151 (MQ=255)

                                                                                                                                 tGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCt                     >  7:785503/1‑151 (MQ=255)

                                                                                                                                   gaaaGTAATTCATCTTTATTCCCCTCCATATTTAAAAACCCGCCGATG‑TT‑CGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTa                    <  6:703132/147‑1 (MQ=25)

                                                                                                                                   gACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTAc                   <  3:908548/151‑1 (MQ=255)

                                                                                                                                    aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTAcc                  >  3:658096/1‑151 (MQ=255)

                                                                                                                                    aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTAcc                  >  8:1304039/1‑151 (MQ=255)

                                                                                                                                      aGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCg                >  3:428055/1‑151 (MQ=255)

                                                                                                                                        tcattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGGGTTCTGTAGTGGAGAGtca                                                             >  5:1561859/1‑104 (MQ=14)

                                                                                                                                         cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTCGCTCAAGCAGCCTACCCGGGt             >  7:999355/1‑151 (MQ=255)

                                                                                                                                          attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGtt            >  4:589585/1‑151 (MQ=255)

                                                                                                                                          aataatCTTTCTTACCCTCAAAAATCAACTCCCCGGAGATC‑AG‑TGTTTTTAGGTAAATAACGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGtt            <  4:336332/147‑1 (MQ=255)

                                                                                                                                           ttcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTc           >  5:589070/1‑151 (MQ=255)

                                                                                                                                            tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTc           <  8:384400/150‑1 (MQ=255)

                                                                                                                                             catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCACCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTc           >  1:49915/1‑149 (MQ=255)

                                                                                                                                                  ttCTGCCCCTCCAAAAGCAAACACCCGACGACG‑CG‑GGTTTTTACGTAAAGCCCGTGAACCTGACCGCTAAGCCGGTCTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGt        <  5:107105/147‑1 (MQ=37)

                                                                                                                                                   tCTGCCCCTCCAACAGCAAAAACCCTCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACgg    <  7:65711/150‑1 (MQ=255)

TTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGC  >  NC_000913/3270019‑3270317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`