Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,708,8050TA27.9% 136.0 / 39.0 179R629R (CGT→CGA) rsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base T (63/38);  new base A (35/4);  total (120/59)
Fisher's exact test for biased strand distribution p-value = 1.72e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 183 total aligned reads displayed.

CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAG  >  NC_000913/1708656‑1708955
                                                                                                                                                     |                                                                                                                                                       
ccagaaccccttgatgATCCGCGCAAAACTGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg                                                                                                                                                        <  5:142782/136‑1 (MQ=11)
ccAGAACCCCCGGCCGATCCGCGCAAACCTGCCGTAGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg                                                                                                                                                        <  4:1138819/151‑1 (MQ=11)
           ggccGATCCCCGGAAACCCGCCCTTGAACCGGCTCTCTCCAGTGCCAACGGGCGCAATCGGGAACACCAACAGGAAACTAAGGACGCAGCACAACAGGCCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGc                                                                                                                                             <  1:1061550/148‑1 (MQ=2)
             ccGATCCTCGAAAAACCGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACATCAACAGGCTAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCaa                                                                                                                                           <  1:1327364/150‑1 (MQ=11)
              ggATGCGCGTAAAGCCGCCGGCGAAGCCGCTATTCCCCGGGCCCAAGCGCGCAAGCTGGAACAGCTACAGGCTACTCCGGAAGCAGAACAACATGGCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg                                                                                                                                          <  6:1045936/150‑1 (MQ=14)
               gttCCGCTCAAAGCCGCTGTTGATTTCTCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgctcaggccaaaaaa                                                                                                                                          <  3:338548/148‑14 (MQ=18)
               gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCAGAAGTAGAAGCGGCTATTGCCCGAGCGaacacgagcgacc                                                                                                                                         >  2:66500/1‑140 (MQ=11)
                aTCCTCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCt                                                                                                                                        <  2:972736/151‑1 (MQ=255)
                    gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGAAGAACAGGTCGATCCGCGCAAAGCGGCTGTCGAAGCCGCTATTGCCCGGGCGAACGCAGGCACGCTggcc                                                                                                                                    >  5:713206/1‑149 (MQ=14)
                    gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTGGAACAGCAACAGACAAATGACGAGCCACAAGAACAGAAAGATACGAGCAAATACGCAGTCGAAGCCGCGATTGCCCATCACAAAGCAAACAAGCTGGa                                                                                                                                     >  4:618715/1‑150 (MQ=2)
                    gcgcAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATTCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa                                                                                                                                    <  8:1514325/151‑1 (MQ=255)
                     cgttaaGCCGCCGTAGAAGCCGCTATCGACCGTGACAAAGCGGGCAATCTGGAACATCAACAGGCTAATGCGGAACCAGAACAAGAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa                                                                                                                                    <  2:42156/146‑1 (MQ=11)
                     attaatcctgccgTGTAAGCATCTATAGCCCGTTCCAAATCGCGCAAGCTGCATCAGCAACAGTCTAATTCGGAAGCAGCATAAGAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa                                                                                                                                    <  4:11057/141‑1 (MQ=11)
                       cAAATCCGCCGGCGAAGCAGCTATTTCCCGGGCCAAACCGCGCAACCTGGAACAGCAACAGGATAATGCGGAACCAGAACAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAg                                                                                                                                 <  6:397162/151‑1 (MQ=11)
                       cAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGGCGAAACAGAAGAACACTTCGCTCCGCTCAAAGCGGCCGTCGACGCGGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAAc                                                                                                                                   >  5:954587/1‑149 (MQ=14)
                       aaatcgtgcaggagcagcagcTATTGACCGGGCCAAATGTCGCAATCTGGAACAGCAACAGGCTAATGCGGACCCAGAATAACATGTCGATCCGCGCAAATCGGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAg                                                                                                                                 <  2:900914/136‑1 (MQ=11)
                         aaactgccggagAAGCAGCTATTTCCCGGGACAAAGCTCGGAATCTGGAACAGCAACAGGATAATGCGGAACCAGAAGAACAGGGGGATCCGCGCAAAGCTGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa                                                                                                                               <  2:239613/140‑1 (MQ=11)
                          aGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGGATCCGCAATTCCGCGTGGAAAAGAACGCAAGATGGAAAAGCa                                                                                                                               >  3:702346/1‑150 (MQ=11)
                                cgTGGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAAGATCAACAGGCTAATCCGGAACCAGAACAAGACGGCGATCCGCGGAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt                                                                                                                        <  6:920189/151‑1 (MQ=11)
                                    gcaGCCGCTATGTCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAAGAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg                                                                                                                    <  1:988930/149‑1 (MQ=11)
                                    gAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGCTCCGCGCAAAGCCGCCGTCGCAGACGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg                                                                                                                    >  1:1145376/1‑151 (MQ=255)
                                       gcagctatttaacGTGCCTAATCTCGGAATCTGGAAGATCAACAGGATAATCAGGAACCAGAACAACAGGCTGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGcc                                                                                                                  <  4:624091/138‑1 (MQ=11)
                                         cGCTATCGCCCGTGCCAAAGCTCGCCAGCTGTAACAGCAACAGCCTAATGCGTAACCAGAAGCACACGTCGATCCGCTCAATCCCTCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg                                                                                                               <  2:676629/151‑1 (MQ=11)
                                                 cccGTCCCAAATCGCGGAAGCTGGAACACCAACAGGCTAATTCGGACCCAGAACAAGATGGCGATCCCCGCAAACCGGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca                                                                                                       <  7:1809605/151‑1 (MQ=11)
                                                   cGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCCAAAGCACGCACGCTGGAACAGCAACAGGCTAATGCGGAGCCAGaacaac                                                                                                     >  5:1041838/1‑151 (MQ=255)
                                                    ccgcgaatccgagcAATCTGGAAGAACATCAGGAAAATCACGAAGCAGAATAAGATGCTGATCCTCGTAAACCTGCCGTTGAAGCAGCTATAGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAacaaca                                                                                                    <  4:1571341/139‑1 (MQ=2)
                                                      gCCAAAGCGCGCAAGTTTTAACTGAAACTGCCTAATGCGTAACCACAACTATAGGGTCATCCGCTCAAATACTCGTCCCTATTCGCTTCTGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg‑g                                                                                                 <  4:51164/151‑1 (MQ=2)
                                                      gCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGCGCGAAAGCCCGCAAGCGCGCCCACCAACCGGCTAAGGCCGGGCgagacgaccggg                                                                                                  >  5:781096/1‑143 (MQ=11)
                                                        cAAAGCGCGGAAGCTGGAACAGCAACAGGATAATGCCGAACCAGCAGAACATGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTc                                                                                               <  5:1626512/151‑1 (MQ=14)
                                                        cAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGCAGCGGCTATTGCCCGAGCCAACGCCCGAAAGCGGGCCCAGCACCAGGGTAATTCCGAGGCAGAACACCAC‑GTc                                                                                               >  5:238438/1‑151 (MQ=14)
                                                          aaGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGCCGCCGCTATTGCCCGCGCGCACGCCACAAAACCCGAACAGCACCAGGCTCAATCCGAGCAAGAacaccacttcac                                                                                              >  7:165217/1‑145 (MQ=2)
                                                           cagtcgcAACCAGGAACAACAACAGGATACTGCGGACGCAGAAAAAGAGGCGGATCCCCGTAAACCCGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGAt                                                                                            <  6:1549789/147‑1 (MQ=14)
                                                            gcgctcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTGGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATc                                                                                           <  5:1326315/151‑1 (MQ=255)
                                                              gcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCAAAAGAACGCAACCTCGAACAGCAACAGCATAATGAAGACCCAGAAGAACAG‑CTAGATccc                                                                                         >  2:1340352/1‑150 (MQ=11)
                                                                  aaGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCGAAAGCACGCAAGCTGGAACAGCACCAGGCTAAAGACGAGCCAGAACTCCAG‑GTCGCTAcgccg                                                                                      >  1:210894/1‑148 (MQ=14)
                                                                     caggAACAACAACAGGATAATGAGGAAGCAGCAACAGTTGCTGATCCCCGTAAACCCGCCGTCGAAGCAGCTATCGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAg                                                                                  <  7:93264/149‑1 (MQ=11)
                                                                       ggAACATCAACAGGATAATTCGGAACCAGAACAACATGTCGATCCTCGCAAAGCAGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAgcc                                                                                <  2:1013519/151‑1 (MQ=11)
                                                                       ggAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCAGTGCCAACGCACGCAAGCTGGACCAGCAACAGGCTACTGCCGAGCCAGACGAACAG‑GTCGATCCGCGCAAAgcc                                                                                >  5:721031/1‑151 (MQ=11)
                                                                       ggAACACCAACAGCATAATCCGGAAGCAGCACACGTTGCGGATCCTCGTAAAGCTGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGATCCAGAACAACAG‑GTCGATCCGCGCAAAg                                                                                  <  4:251782/149‑1 (MQ=11)
                                                                          aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGCCGCGGCTATTGCCCGAGCACACGCCCAAAAACACGACCAGCAACAGGATGTAGACGAGACAGAGGAACAGCGTC‑CTCCGCGCAAAgcggcg                                                                             >  3:74302/1‑150 (MQ=9)
                                                                           cAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGGCGGCGAAGACCAGAATTCACGACACAACTCACTCACGATCCAACAGCAACAGGCTAATGCCGTGCCAGAAAAACAG‑GTCGATCCgcgccaggcgggcg                                                                            >  7:766089/1‑141 (MQ=9)
                                                                             gCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCCGGCAAAGCGGCCGCGTAAGCAGGACTTTCACTCCCCACAGGACGCAAGCTGGAACAGCACCAGGCTAATGCGGAGCCAGAAGAAGAG‑GTGGATCcgggggacgcggccggg                                                                          >  6:1516502/1‑136 (MQ=2)
                                                                               aaCAGGCTAATGCGGAACCAGAAGAACAGGTAGAACATCGGAAAACCGACGTCGAAGCAAATATTGACCGAGAAAAAGCACCAAAACGGGAACAGCAAAACAATAAAAAAAAGCCAGAACAACAG‑GGGGATGcgcggacggccggcggggc                                                                        >  8:782367/1‑136 (MQ=2)
                                                                                  aGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCGGCTATTGCCCGAGCCAAAGCAACAAAGCTGGAACAGCAACAGGCTAATGCCCGTCCACAAGAACAG‑GTCGATCCGCCCAAAGCGGCAGTCGCAGc                                                                     >  6:1234123/1‑151 (MQ=11)
                                                                                    tcTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGAAGCGGCTATTGCCCGAGCCAAAGCACACAAACAGGAACAGCAACAGGCTAATAACGAGCCAGAACAACAT‑GTCCATCCTCGCAAAgcggaagtccaaccgg                                                                   >  7:1274005/2‑137 (MQ=255)
                                                                                    gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGCCGCGGCTATTGCCCGCGCAAAGGCCAAAAAACACGCCCAGCAAAAGGGTAAAACCGAGCAAGAACAAAAG‑CTCGAACAGCGCCAAACCGCAGtagccgatg                                                                   >  3:987794/1‑143 (MQ=9)
                                                                                    gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTa                                                                                                                       >  7:932009/1‑100 (MQ=255)
                                                                                        aTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACACAAGCAGGCACAGCACCACGCTCAACCCCACCAACAACAACAG‑CAACATCCCCGCAAAcccgacctaccacccccaa                                                                >  3:1770841/1‑135 (MQ=2)
                                                                                           cGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAG‑GTCGATCCGCGCACAGCCGCCGTCgccgcggcgagtgc                                                            >  1:1756734/1‑138 (MQ=11)
                                                                                           cGGAACCAGAAGAACAGGTCGATACGCGCAAAGCGGCCGTAGAAGCGGCTATTGCCCGCGCAAAAGCACGCAAGCTCGAACAGCAACAGCATAAAAACGAGCAAAAATAACAG‑GTCGATCCGCGAAAAGCGGACGTAGACGcctagatttc                                                            >  4:404278/1‑143 (MQ=255)
                                                                                            ggAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTTCAAGTGACAAACCACGCACGCTGGAACAGAAACAGCCTAATGCCGAGCCAGAAGAACAG‑GTGGATCCGAGAAAAGCCGCCGTGGCCGCGGCTATTggc                                                           >  5:1755928/1‑149 (MQ=11)
                                                                                            ggAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCAGAGCCAAAGCACGCAAGCTGGAAAAGCAACAGGCTAATGCGGAGCCAGAAGAACAG‑GTAGATCCGCGCAAAGCGGCAGTCGacggcggaagtgcc                                                           >  2:1086925/1‑138 (MQ=11)
                                                                                             gAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCAAAAGCACAAAAACACGAACAGCAACAGGCTAATGCCGAGCCAGAAAAAAAG‑GTAGATCCGCGAAAAGCGGAAGTAGAATCGGCTATTGca                                                           >  3:676852/1‑149 (MQ=11)
                                                                                                ccAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGACGCGGCTATTGCCCg                                                         >  1:239778/1‑149 (MQ=255)
                                                                                                    aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACCACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCa                                                    >  7:1500578/1‑150 (MQ=255)
                                                                                                     agaaCAGGTCGATCCGCGCAAAGCCGCAGTAGCAGCCGCTATTGCCCGAGCAAAAGCAAAAAACCACGAACAGCAGCAGGATAATAAAGATCCAGAGAAACAC‑GTGGATCCGAACAAAGAAGCCGTTTCAGCAGCTATTGCACGAGccc                                                    >  8:495949/1‑148 (MQ=2)
                                                                                                       acctgggcGATCCGCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCTCGCAATCTGGAACAGCAACAGGATAATGCCGACCCAGAACAACAG‑GGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc                                                <  7:533273/144‑1 (MQ=11)
                                                                                                        aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCTCGCAAGCGGGAACAGCAACAGGCTACTCCCGCCCCAGAAGAACAG‑GTGGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGGGCCACAgcg                                               >  5:20617/1‑151 (MQ=11)
                                                                                                        aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTCGAACAGCAACAGGCTAATGACGAACCAGAACAACAG‑GTAGATCCGCGAAAAGCAGCAGTCGAAGCGGCTATTGCCCGAGCAAAAgcc                                               >  4:1565474/1‑150 (MQ=11)
                                                                                                         cAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCGAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCAGTTGCAGCGGCTATTGCCCGCGCTCAAgccc                                              >  6:168371/1‑149 (MQ=14)
                                                                                                          aGGTCGATCCGCGCAAAGCGGCCGTGGAAGCGGCTATTGCCCGAGCGAAGGCCCGCAAGCTGGCACAGCAACAGGGTGTTGCCGAGCCAGAACTACAG‑GTCGATCCGCGCAAAGCCGCCGTCGCAGCGGCTATTGCACGCGCGCATgcgcg                                             >  7:105381/1‑151 (MQ=11)
                                                                                                          aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCTCCGCGGACATCCCGTCGCAGCACAACTC‑GGGCCTCAGCGGCAAGCGGCCGGCGAAGCGGCTATTGCACGACCCAAAggcgg                                             >  1:464064/1‑147 (MQ=2)
                                                                                                          aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCGGCAGTGGAAGCGGCTATTGCCCGCGCTAAGgcca                                              >  2:592705/1‑148 (MQ=14)
                                                                                                           ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGGGCCAGAAGAACAG‑GTGGATCCGCGCAAAGCGGCAGTGGCCGCGGCTATTGGCCGCGCCGAGgcgcgc                                            >  5:1366022/1‑151 (MQ=11)
                                                                                                           ggTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCAGGAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAG‑GTAGATCATCGCAAAGCCGCAGTAGCCGCCGCTATTGACAGAGCGAAAgcgaa                                             >  3:1558656/1‑148 (MQ=14)
                                                                                                            gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATCGCGAGACAGAACAACTC‑TTACCTCCGCTCAAACCGGACGTCGAAGCCGCTATTGCCCGCGCCTAAgaacgc                                            >  5:1508550/1‑145 (MQ=11)
                                                                                                               gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCACCAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCACAGCCGCAGTTGACGCGGCTATTGCCCGAGCGCAAGCGCACAAAc                                        >  1:902361/1‑151 (MQ=14)
                                                                                                               gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGCACGCAAGCTGGGCCAGCCACCGGCTAATGCCGACCGTCAAGAACAG‑GTCGCTCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGCGCGCACgcgcgccgcg                                        >  1:869599/1‑147 (MQ=11)
                                                                                                                  cctcgcAAACCCGCCGTCGAAGCCGCTATCGCCGGAGCCAAAGCACGCAAGCTGGAACAGCAACAGCCTAATGCCGACCCAGAACACCAG‑GGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg                                     <  1:538138/148‑1 (MQ=14)
                                                                                                                   cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAAGGCGCGCAAAggggc                                    >  2:513541/1‑150 (MQ=255)
                                                                                                                   cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCCGTGGCCGCGGCTATTGCCAGAGCCGAAGCGCGCacgacggc                                    >  5:899964/1‑144 (MQ=14)
                                                                                                                      gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGCGCAAAAGCCAGAAAACCGGAAc                                  >  4:1446003/1‑150 (MQ=14)
                                                                                                                      cccccccccccgccgCAGCCGCTATCGCCCGCTCCAAAGCCCGCAAGCTGGAACAGCAACAGCCTAATGCGCATGCATCCACACAC‑GTCGTGCCCCCCAAAGCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa                                 <  5:1144802/142‑1 (MQ=255)
                                                                                                                        aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGCGCCAGAACAACAG‑GTCGATCCGCGCAAAGCGGCCGTCGACGCGGCTATTGCCCGAGCCCACGCGCGCAAACCGGCCCAGc                               >  7:1441389/1‑151 (MQ=11)
                                                                                                                        aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTGGATCCGCGCAAAGCGGCAGTAGCCGCGGCTATTGCCCGCGCGAACGCCCTCaaaagcgcgcagc                               >  1:1134606/1‑141 (MQ=11)
                                                                                                                        aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCCGTCGCCGCGGCTATTGCCCGCGACACAgctcgccacggcgcaccgc                               >  5:47196/1‑138 (MQ=14)
                                                                                                                           cccgccgTCGAAGCATCTATTCCCCGCGCCAAAGCGCGCAAGCGGCATCACCATCCTGATACGCGGGAACCAGTCGCACCT‑GGCGATCCCCGCAAACCCGCCGTCGAAGCAGCTATTCCCCGAGCCAAAGCGCGCAAACGGGAACAGCAAc                            <  1:1371219/150‑1 (MQ=2)
                                                                                                                                 gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCGGCCGTCGCCGCGGCTATTGCCCGCGCGAACGCGCGCAACCCGGCCCAGCGACCGGCtc                      >  6:51841/1‑150 (MQ=14)
                                                                                                                                 gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCGGCCGTCGACGCGGCTATTGCCCGCGCCCACGCCCGCAAACCGGCCCAGCAGCAGGCtt                      >  6:697038/1‑150 (MQ=14)
                                                                                                                                 gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCGAAAGCGCGAAAACCGGACCAGCACCAGGCt                       >  1:447461/1‑150 (MQ=14)
                                                                                                                                 gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGCGCAAAGGCCAAAAAACGCGAACAGCacaaggaa                       >  2:759579/1‑143 (MQ=14)
                                                                                                                                 gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCAGAAGTCGCAGCCGCTATTGCCCGCGCCAAAGCCAACAAACCCGAACAGCagcagcgt                       >  1:301331/1‑143 (MQ=14)
                                                                                                                                 gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGACCCAGAACAACAG‑GTAGATCCGAGCAAAGCCGCAGTCGAAGCGGCTATTGCCCGAGCAAAAGCCAACAAACCCGAACAGCacaaggat                       >  2:467816/1‑143 (MQ=14)
                                                                                                                                  tCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAACGCGCGCAAACGGGAACAGCACCCGGCTa                      >  5:1318642/1‑150 (MQ=255)
                                                                                                                                  ccccagccgcgcccgCCCGCGCCAAAGCTCTCAAGCTGGAACAGCAACAGGCTAATGCCGATGCTCACGAGCGC‑GTCGAGCCGAGAACTGCGGCCTTCCCATCCGCTATCGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTaa                     <  7:1325542/137‑1 (MQ=2)
                                                                                                                                   cccccccGCTATCGCCCGAGCCAAAGCTAGCAATCTTGAACAGCAACAGGCTAATGCCGACCCAGAACAACAG‑GTCGATCCGCTCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt                    <  2:1629631/146‑1 (MQ=14)
                                                                                                                                    gAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGCCGCGGCTATTGCCCGCGCCAACGCCCGCAAACCGGAACAGCACCCGGCTAATg                   >  6:733978/1‑151 (MQ=14)
                                                                                                                                    gAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAACCGGGAACAGAAACAGGATAATg                   >  2:984153/1‑151 (MQ=11)
                                                                                                                                       gCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCgg                >  5:419161/1‑151 (MQ=255)
                                                                                                                                         cGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCGAAAGCCAGCAAACGCGACCAGCACAAGGCTaaagacgac              >  2:1738836/1‑144 (MQ=14)
                                                                                                                                           cTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAG‑GTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGGAGGAGCAGCACGCGGCTATGGCggcccg            >  1:597074/1‑147 (MQ=14)
                                                                                                                                            tATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGCGCCAGAAGAACAG‑GTCGATCCGCGCAAAGCGGCCGTCGACGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGACCCGCGAGCGGCtgaggccgcggcg           >  5:1203755/1‑139 (MQ=11)
                                                                                                                                            tATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAG‑GTCGCTACGCGAAACGCCGGAGGCGAAGCCGCTATTGACCGCGCCAAAGCGCGCAAGCGGGAACAGCAACAGGCTAATGCGGAGccc           >  5:560121/1‑150 (MQ=11)
                                                                                                                                            tATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAAGGGGAACAGCAACCGGCTAATGCGGAGcc            >  1:1455511/1‑150 (MQ=255)
                                                                                                                                            tATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCAAATCCGAAGACAGAACAGGAG‑GTAAATCCTCTAAACGAATCAGTAGAAGACGCTATTGCCCGAGACAAATAAAGAAAACGGGAACCGCAGCCgggggctggggagcgg           >  2:1388480/1‑137 (MQ=9)
                                                                                                                                             aTTGCCCCTGCGAAAGACGGCAAGCAGGAAACCCCTCAGGCCAACCGCGATCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGcc            <  5:1784549/149‑1 (MQ=14)
                                                                                                                                                gCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTGGATCCGCGCAAAGCCGCCGTCGCCGCGGCTATTGCCCGCGCGAACGCGCGCAAACCGGAGCACCCACCCGCGACTGCGGGGCAaga         >  2:206856/1‑149 (MQ=14)
                                                                                                                                                    gTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAG‑GTAGATCCGCGCAAAGCGGCAGTAGAAGCGGCTATTGCCCGCGCAAAAGCCAAAAAACACGACCAGCAACCAGCTCATGAGCGACCAGaacaac    >  3:1139755/1‑150 (MQ=2)
                                                                                                                                                    gTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGCGCGCACGCCCCAAAACGCGACCAGCACACGGCTAATGCGGAGCCagaagacc    >  1:1532661/1‑148 (MQ=17)
                                                                                                                                                     tGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAAGAGCG‑GTAGATCCCCCGTAAGAAGGCGTCTCACGCGCGAGAGGCGGCGCCAAAGCGCGCAGGGGGGAAAAGAAACCGGCTAATGCGGGGcgcgcgggggcg  >  7:99947/1‑140 (MQ=2)
                                                                                                                                                     |                                                                                                                                                       
CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAG  >  NC_000913/1708656‑1708955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑