Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,708,805 | 0 | T | A | 27.9% | 136.0 / 39.0 | 179 | R629R (CGT→CGA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
Reads supporting (aligned to +/- strand): ref base T (63/38); new base A (35/4); total (120/59) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.72e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 183 total aligned reads displayed.
CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAG > NC_000913/1708656‑1708955 | ccagaaccccttgatgATCCGCGCAAAACTGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg < 5:142782/136‑1 (MQ=11) ccAGAACCCCCGGCCGATCCGCGCAAACCTGCCGTAGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg < 4:1138819/151‑1 (MQ=11) ggccGATCCCCGGAAACCCGCCCTTGAACCGGCTCTCTCCAGTGCCAACGGGCGCAATCGGGAACACCAACAGGAAACTAAGGACGCAGCACAACAGGCCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGc < 1:1061550/148‑1 (MQ=2) ccGATCCTCGAAAAACCGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACATCAACAGGCTAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCaa < 1:1327364/150‑1 (MQ=11) ggATGCGCGTAAAGCCGCCGGCGAAGCCGCTATTCCCCGGGCCCAAGCGCGCAAGCTGGAACAGCTACAGGCTACTCCGGAAGCAGAACAACATGGCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 6:1045936/150‑1 (MQ=14) gttCCGCTCAAAGCCGCTGTTGATTTCTCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgctcaggccaaaaaa < 3:338548/148‑14 (MQ=18) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCAGAAGTAGAAGCGGCTATTGCCCGAGCGaacacgagcgacc > 2:66500/1‑140 (MQ=11) aTCCTCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCt < 2:972736/151‑1 (MQ=255) gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGAAGAACAGGTCGATCCGCGCAAAGCGGCTGTCGAAGCCGCTATTGCCCGGGCGAACGCAGGCACGCTggcc > 5:713206/1‑149 (MQ=14) gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTGGAACAGCAACAGACAAATGACGAGCCACAAGAACAGAAAGATACGAGCAAATACGCAGTCGAAGCCGCGATTGCCCATCACAAAGCAAACAAGCTGGa > 4:618715/1‑150 (MQ=2) gcgcAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATTCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa < 8:1514325/151‑1 (MQ=255) cgttaaGCCGCCGTAGAAGCCGCTATCGACCGTGACAAAGCGGGCAATCTGGAACATCAACAGGCTAATGCGGAACCAGAACAAGAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa < 2:42156/146‑1 (MQ=11) attaatcctgccgTGTAAGCATCTATAGCCCGTTCCAAATCGCGCAAGCTGCATCAGCAACAGTCTAATTCGGAAGCAGCATAAGAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa < 4:11057/141‑1 (MQ=11) cAAATCCGCCGGCGAAGCAGCTATTTCCCGGGCCAAACCGCGCAACCTGGAACAGCAACAGGATAATGCGGAACCAGAACAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAg < 6:397162/151‑1 (MQ=11) cAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGGCGAAACAGAAGAACACTTCGCTCCGCTCAAAGCGGCCGTCGACGCGGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAAc > 5:954587/1‑149 (MQ=14) aaatcgtgcaggagcagcagcTATTGACCGGGCCAAATGTCGCAATCTGGAACAGCAACAGGCTAATGCGGACCCAGAATAACATGTCGATCCGCGCAAATCGGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAg < 2:900914/136‑1 (MQ=11) aaactgccggagAAGCAGCTATTTCCCGGGACAAAGCTCGGAATCTGGAACAGCAACAGGATAATGCGGAACCAGAAGAACAGGGGGATCCGCGCAAAGCTGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa < 2:239613/140‑1 (MQ=11) aGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGGATCCGCAATTCCGCGTGGAAAAGAACGCAAGATGGAAAAGCa > 3:702346/1‑150 (MQ=11) cgTGGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAAGATCAACAGGCTAATCCGGAACCAGAACAAGACGGCGATCCGCGGAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt < 6:920189/151‑1 (MQ=11) gcaGCCGCTATGTCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAAGAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 1:988930/149‑1 (MQ=11) gAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGCTCCGCGCAAAGCCGCCGTCGCAGACGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg > 1:1145376/1‑151 (MQ=255) gcagctatttaacGTGCCTAATCTCGGAATCTGGAAGATCAACAGGATAATCAGGAACCAGAACAACAGGCTGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGcc < 4:624091/138‑1 (MQ=11) cGCTATCGCCCGTGCCAAAGCTCGCCAGCTGTAACAGCAACAGCCTAATGCGTAACCAGAAGCACACGTCGATCCGCTCAATCCCTCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 2:676629/151‑1 (MQ=11) cccGTCCCAAATCGCGGAAGCTGGAACACCAACAGGCTAATTCGGACCCAGAACAAGATGGCGATCCCCGCAAACCGGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca < 7:1809605/151‑1 (MQ=11) cGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCCAAAGCACGCACGCTGGAACAGCAACAGGCTAATGCGGAGCCAGaacaac > 5:1041838/1‑151 (MQ=255) ccgcgaatccgagcAATCTGGAAGAACATCAGGAAAATCACGAAGCAGAATAAGATGCTGATCCTCGTAAACCTGCCGTTGAAGCAGCTATAGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAacaaca < 4:1571341/139‑1 (MQ=2) gCCAAAGCGCGCAAGTTTTAACTGAAACTGCCTAATGCGTAACCACAACTATAGGGTCATCCGCTCAAATACTCGTCCCTATTCGCTTCTGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg‑g < 4:51164/151‑1 (MQ=2) gCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGCGCGAAAGCCCGCAAGCGCGCCCACCAACCGGCTAAGGCCGGGCgagacgaccggg > 5:781096/1‑143 (MQ=11) cAAAGCGCGGAAGCTGGAACAGCAACAGGATAATGCCGAACCAGCAGAACATGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTc < 5:1626512/151‑1 (MQ=14) cAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGCAGCGGCTATTGCCCGAGCCAACGCCCGAAAGCGGGCCCAGCACCAGGGTAATTCCGAGGCAGAACACCAC‑GTc > 5:238438/1‑151 (MQ=14) aaGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGCCGCCGCTATTGCCCGCGCGCACGCCACAAAACCCGAACAGCACCAGGCTCAATCCGAGCAAGAacaccacttcac > 7:165217/1‑145 (MQ=2) cagtcgcAACCAGGAACAACAACAGGATACTGCGGACGCAGAAAAAGAGGCGGATCCCCGTAAACCCGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGAt < 6:1549789/147‑1 (MQ=14) gcgctcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTGGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATc < 5:1326315/151‑1 (MQ=255) gcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCAAAAGAACGCAACCTCGAACAGCAACAGCATAATGAAGACCCAGAAGAACAG‑CTAGATccc > 2:1340352/1‑150 (MQ=11) aaGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCGAAAGCACGCAAGCTGGAACAGCACCAGGCTAAAGACGAGCCAGAACTCCAG‑GTCGCTAcgccg > 1:210894/1‑148 (MQ=14) caggAACAACAACAGGATAATGAGGAAGCAGCAACAGTTGCTGATCCCCGTAAACCCGCCGTCGAAGCAGCTATCGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAg < 7:93264/149‑1 (MQ=11) ggAACATCAACAGGATAATTCGGAACCAGAACAACATGTCGATCCTCGCAAAGCAGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAgcc < 2:1013519/151‑1 (MQ=11) ggAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCAGTGCCAACGCACGCAAGCTGGACCAGCAACAGGCTACTGCCGAGCCAGACGAACAG‑GTCGATCCGCGCAAAgcc > 5:721031/1‑151 (MQ=11) ggAACACCAACAGCATAATCCGGAAGCAGCACACGTTGCGGATCCTCGTAAAGCTGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGATCCAGAACAACAG‑GTCGATCCGCGCAAAg < 4:251782/149‑1 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGCCGCGGCTATTGCCCGAGCACACGCCCAAAAACACGACCAGCAACAGGATGTAGACGAGACAGAGGAACAGCGTC‑CTCCGCGCAAAgcggcg > 3:74302/1‑150 (MQ=9) cAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGGCGGCGAAGACCAGAATTCACGACACAACTCACTCACGATCCAACAGCAACAGGCTAATGCCGTGCCAGAAAAACAG‑GTCGATCCgcgccaggcgggcg > 7:766089/1‑141 (MQ=9) gCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCCGGCAAAGCGGCCGCGTAAGCAGGACTTTCACTCCCCACAGGACGCAAGCTGGAACAGCACCAGGCTAATGCGGAGCCAGAAGAAGAG‑GTGGATCcgggggacgcggccggg > 6:1516502/1‑136 (MQ=2) aaCAGGCTAATGCGGAACCAGAAGAACAGGTAGAACATCGGAAAACCGACGTCGAAGCAAATATTGACCGAGAAAAAGCACCAAAACGGGAACAGCAAAACAATAAAAAAAAGCCAGAACAACAG‑GGGGATGcgcggacggccggcggggc > 8:782367/1‑136 (MQ=2) aGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCGGCTATTGCCCGAGCCAAAGCAACAAAGCTGGAACAGCAACAGGCTAATGCCCGTCCACAAGAACAG‑GTCGATCCGCCCAAAGCGGCAGTCGCAGc > 6:1234123/1‑151 (MQ=11) tcTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGAAGCGGCTATTGCCCGAGCCAAAGCACACAAACAGGAACAGCAACAGGCTAATAACGAGCCAGAACAACAT‑GTCCATCCTCGCAAAgcggaagtccaaccgg > 7:1274005/2‑137 (MQ=255) gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGCCGCGGCTATTGCCCGCGCAAAGGCCAAAAAACACGCCCAGCAAAAGGGTAAAACCGAGCAAGAACAAAAG‑CTCGAACAGCGCCAAACCGCAGtagccgatg > 3:987794/1‑143 (MQ=9) gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTa > 7:932009/1‑100 (MQ=255) aTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACACAAGCAGGCACAGCACCACGCTCAACCCCACCAACAACAACAG‑CAACATCCCCGCAAAcccgacctaccacccccaa > 3:1770841/1‑135 (MQ=2) cGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAG‑GTCGATCCGCGCACAGCCGCCGTCgccgcggcgagtgc > 1:1756734/1‑138 (MQ=11) cGGAACCAGAAGAACAGGTCGATACGCGCAAAGCGGCCGTAGAAGCGGCTATTGCCCGCGCAAAAGCACGCAAGCTCGAACAGCAACAGCATAAAAACGAGCAAAAATAACAG‑GTCGATCCGCGAAAAGCGGACGTAGACGcctagatttc > 4:404278/1‑143 (MQ=255) ggAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTTCAAGTGACAAACCACGCACGCTGGAACAGAAACAGCCTAATGCCGAGCCAGAAGAACAG‑GTGGATCCGAGAAAAGCCGCCGTGGCCGCGGCTATTggc > 5:1755928/1‑149 (MQ=11) ggAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCAGAGCCAAAGCACGCAAGCTGGAAAAGCAACAGGCTAATGCGGAGCCAGAAGAACAG‑GTAGATCCGCGCAAAGCGGCAGTCGacggcggaagtgcc > 2:1086925/1‑138 (MQ=11) gAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCAAAAGCACAAAAACACGAACAGCAACAGGCTAATGCCGAGCCAGAAAAAAAG‑GTAGATCCGCGAAAAGCGGAAGTAGAATCGGCTATTGca > 3:676852/1‑149 (MQ=11) ccAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGACGCGGCTATTGCCCg > 1:239778/1‑149 (MQ=255) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACCACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCa > 7:1500578/1‑150 (MQ=255) agaaCAGGTCGATCCGCGCAAAGCCGCAGTAGCAGCCGCTATTGCCCGAGCAAAAGCAAAAAACCACGAACAGCAGCAGGATAATAAAGATCCAGAGAAACAC‑GTGGATCCGAACAAAGAAGCCGTTTCAGCAGCTATTGCACGAGccc > 8:495949/1‑148 (MQ=2) acctgggcGATCCGCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCTCGCAATCTGGAACAGCAACAGGATAATGCCGACCCAGAACAACAG‑GGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc < 7:533273/144‑1 (MQ=11) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCTCGCAAGCGGGAACAGCAACAGGCTACTCCCGCCCCAGAAGAACAG‑GTGGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGGGCCACAgcg > 5:20617/1‑151 (MQ=11) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTCGAACAGCAACAGGCTAATGACGAACCAGAACAACAG‑GTAGATCCGCGAAAAGCAGCAGTCGAAGCGGCTATTGCCCGAGCAAAAgcc > 4:1565474/1‑150 (MQ=11) cAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCGAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCAGTTGCAGCGGCTATTGCCCGCGCTCAAgccc > 6:168371/1‑149 (MQ=14) aGGTCGATCCGCGCAAAGCGGCCGTGGAAGCGGCTATTGCCCGAGCGAAGGCCCGCAAGCTGGCACAGCAACAGGGTGTTGCCGAGCCAGAACTACAG‑GTCGATCCGCGCAAAGCCGCCGTCGCAGCGGCTATTGCACGCGCGCATgcgcg > 7:105381/1‑151 (MQ=11) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCTCCGCGGACATCCCGTCGCAGCACAACTC‑GGGCCTCAGCGGCAAGCGGCCGGCGAAGCGGCTATTGCACGACCCAAAggcgg > 1:464064/1‑147 (MQ=2) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCGGCAGTGGAAGCGGCTATTGCCCGCGCTAAGgcca > 2:592705/1‑148 (MQ=14) ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGGGCCAGAAGAACAG‑GTGGATCCGCGCAAAGCGGCAGTGGCCGCGGCTATTGGCCGCGCCGAGgcgcgc > 5:1366022/1‑151 (MQ=11) ggTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCAGGAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAG‑GTAGATCATCGCAAAGCCGCAGTAGCCGCCGCTATTGACAGAGCGAAAgcgaa > 3:1558656/1‑148 (MQ=14) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATCGCGAGACAGAACAACTC‑TTACCTCCGCTCAAACCGGACGTCGAAGCCGCTATTGCCCGCGCCTAAgaacgc > 5:1508550/1‑145 (MQ=11) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCACCAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCACAGCCGCAGTTGACGCGGCTATTGCCCGAGCGCAAGCGCACAAAc > 1:902361/1‑151 (MQ=14) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGCACGCAAGCTGGGCCAGCCACCGGCTAATGCCGACCGTCAAGAACAG‑GTCGCTCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGCGCGCACgcgcgccgcg > 1:869599/1‑147 (MQ=11) cctcgcAAACCCGCCGTCGAAGCCGCTATCGCCGGAGCCAAAGCACGCAAGCTGGAACAGCAACAGCCTAATGCCGACCCAGAACACCAG‑GGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg < 1:538138/148‑1 (MQ=14) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAAGGCGCGCAAAggggc > 2:513541/1‑150 (MQ=255) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCCGTGGCCGCGGCTATTGCCAGAGCCGAAGCGCGCacgacggc > 5:899964/1‑144 (MQ=14) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGCGCAAAAGCCAGAAAACCGGAAc > 4:1446003/1‑150 (MQ=14) cccccccccccgccgCAGCCGCTATCGCCCGCTCCAAAGCCCGCAAGCTGGAACAGCAACAGCCTAATGCGCATGCATCCACACAC‑GTCGTGCCCCCCAAAGCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa < 5:1144802/142‑1 (MQ=255) aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGCGCCAGAACAACAG‑GTCGATCCGCGCAAAGCGGCCGTCGACGCGGCTATTGCCCGAGCCCACGCGCGCAAACCGGCCCAGc > 7:1441389/1‑151 (MQ=11) aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTGGATCCGCGCAAAGCGGCAGTAGCCGCGGCTATTGCCCGCGCGAACGCCCTCaaaagcgcgcagc > 1:1134606/1‑141 (MQ=11) aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCCGTCGCCGCGGCTATTGCCCGCGACACAgctcgccacggcgcaccgc > 5:47196/1‑138 (MQ=14) cccgccgTCGAAGCATCTATTCCCCGCGCCAAAGCGCGCAAGCGGCATCACCATCCTGATACGCGGGAACCAGTCGCACCT‑GGCGATCCCCGCAAACCCGCCGTCGAAGCAGCTATTCCCCGAGCCAAAGCGCGCAAACGGGAACAGCAAc < 1:1371219/150‑1 (MQ=2) gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCGGCCGTCGCCGCGGCTATTGCCCGCGCGAACGCGCGCAACCCGGCCCAGCGACCGGCtc > 6:51841/1‑150 (MQ=14) gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCGGCCGTCGACGCGGCTATTGCCCGCGCCCACGCCCGCAAACCGGCCCAGCAGCAGGCtt > 6:697038/1‑150 (MQ=14) gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCGAAAGCGCGAAAACCGGACCAGCACCAGGCt > 1:447461/1‑150 (MQ=14) gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGCGCAAAGGCCAAAAAACGCGAACAGCacaaggaa > 2:759579/1‑143 (MQ=14) gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCAGAAGTCGCAGCCGCTATTGCCCGCGCCAAAGCCAACAAACCCGAACAGCagcagcgt > 1:301331/1‑143 (MQ=14) gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGACCCAGAACAACAG‑GTAGATCCGAGCAAAGCCGCAGTCGAAGCGGCTATTGCCCGAGCAAAAGCCAACAAACCCGAACAGCacaaggat > 2:467816/1‑143 (MQ=14) tCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAACGCGCGCAAACGGGAACAGCACCCGGCTa > 5:1318642/1‑150 (MQ=255) ccccagccgcgcccgCCCGCGCCAAAGCTCTCAAGCTGGAACAGCAACAGGCTAATGCCGATGCTCACGAGCGC‑GTCGAGCCGAGAACTGCGGCCTTCCCATCCGCTATCGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTaa < 7:1325542/137‑1 (MQ=2) cccccccGCTATCGCCCGAGCCAAAGCTAGCAATCTTGAACAGCAACAGGCTAATGCCGACCCAGAACAACAG‑GTCGATCCGCTCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt < 2:1629631/146‑1 (MQ=14) gAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGCCGCGGCTATTGCCCGCGCCAACGCCCGCAAACCGGAACAGCACCCGGCTAATg > 6:733978/1‑151 (MQ=14) gAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAACCGGGAACAGAAACAGGATAATg > 2:984153/1‑151 (MQ=11) gCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCgg > 5:419161/1‑151 (MQ=255) cGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCGAAAGCCAGCAAACGCGACCAGCACAAGGCTaaagacgac > 2:1738836/1‑144 (MQ=14) cTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAG‑GTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGGAGGAGCAGCACGCGGCTATGGCggcccg > 1:597074/1‑147 (MQ=14) tATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGCGCCAGAAGAACAG‑GTCGATCCGCGCAAAGCGGCCGTCGACGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGACCCGCGAGCGGCtgaggccgcggcg > 5:1203755/1‑139 (MQ=11) tATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAG‑GTCGCTACGCGAAACGCCGGAGGCGAAGCCGCTATTGACCGCGCCAAAGCGCGCAAGCGGGAACAGCAACAGGCTAATGCGGAGccc > 5:560121/1‑150 (MQ=11) tATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAAGGGGAACAGCAACCGGCTAATGCGGAGcc > 1:1455511/1‑150 (MQ=255) tATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCAAATCCGAAGACAGAACAGGAG‑GTAAATCCTCTAAACGAATCAGTAGAAGACGCTATTGCCCGAGACAAATAAAGAAAACGGGAACCGCAGCCgggggctggggagcgg > 2:1388480/1‑137 (MQ=9) aTTGCCCCTGCGAAAGACGGCAAGCAGGAAACCCCTCAGGCCAACCGCGATCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGcc < 5:1784549/149‑1 (MQ=14) gCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTGGATCCGCGCAAAGCCGCCGTCGCCGCGGCTATTGCCCGCGCGAACGCGCGCAAACCGGAGCACCCACCCGCGACTGCGGGGCAaga > 2:206856/1‑149 (MQ=14) gTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAG‑GTAGATCCGCGCAAAGCGGCAGTAGAAGCGGCTATTGCCCGCGCAAAAGCCAAAAAACACGACCAGCAACCAGCTCATGAGCGACCAGaacaac > 3:1139755/1‑150 (MQ=2) gTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGCGCGCACGCCCCAAAACGCGACCAGCACACGGCTAATGCGGAGCCagaagacc > 1:1532661/1‑148 (MQ=17) tGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAAGAGCG‑GTAGATCCCCCGTAAGAAGGCGTCTCACGCGCGAGAGGCGGCGCCAAAGCGCGCAGGGGGGAAAAGAAACCGGCTAATGCGGGGcgcgcgggggcg > 7:99947/1‑140 (MQ=2) | CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAG > NC_000913/1708656‑1708955 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |