Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,708,901 | 0 | A | C | 37.0% | 169.6 / 98.3 | 252 | R661R (CGA→CGC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
Reads supporting (aligned to +/- strand): ref base A (106/49); new base C (83/8); total (191/61) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.47e-05 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 254 total aligned reads displayed.
AAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAG > NC_000913/1708756‑1709051 | aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACCACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCa > 7:1500578/1‑150 (MQ=255) agaaCAGGTCGATCCGCGCAAAGCCGCAGTAGCAGCCGCTATTGCCCGAGCAAAAGCAAAAAACCACGAACAGCAGCAGGATAATAAAGATCCAGAGAAACACGTGGATCCGAACAAAGAAGCCGTTTCAGCAGCTATTGCACGAGccc > 8:495949/1‑148 (MQ=2) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCTCGCAAGCGGGAACAGCAACAGGCTACTCCCGCCCCAGAAGAACAGGTGGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGGGCCACAgcg > 5:20617/1‑151 (MQ=11) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTCGAACAGCAACAGGCTAATGACGAACCAGAACAACAGGTAGATCCGCGAAAAGCAGCAGTCGAAGCGGCTATTGCCCGAGCAAAAgcc > 4:1565474/1‑150 (MQ=11) cAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCGAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTTGCAGCGGCTATTGCCCGCGCTCAAgccc > 6:168371/1‑149 (MQ=14) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCTCCGCGGACATCCCGTCGCAGCACAACTCGGGCCTCAGCGGCAAGCGGCCGGCGAAGCGGCTATTGCACGACCCAAAggcgg > 1:464064/1‑147 (MQ=2) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTGGAAGCGGCTATTGCCCGCGCTAAGgcca > 2:592705/1‑148 (MQ=14) ggTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCAGGAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAGGTAGATCATCGCAAAGCCGCAGTAGCCGCCGCTATTGACAGAGCGAAAgcgaa > 3:1558656/1‑148 (MQ=14) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCGAACGCCCGCAAGCGGGAACAGCAGCAGGATAATGCCGAGCCAGAACAGCCGGTGGATCCGCGCAACGCGGCAGTCGACGCCGCTATTGCCCGCGCGCAGGCCCGCaacc > 7:963913/1‑149 (MQ=2) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCACCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCACAGCCGCAGTTGACGCGGCTATTGCCCGAGCGCAAGCGCACAAAc > 1:902361/1‑151 (MQ=14) cctcgcAAACCCGCCGTCGAAGCCGCTATCGCCGGAGCCAAAGCACGCAAGCTGGAACAGCAACAGCCTAATGCCGACCCAGAACACCAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg < 1:538138/148‑1 (MQ=14) ccgccgaaaCCCCCCGTCCAAGCCGCAACCGCCCGAGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTGGATCCGCTCAAAGGCGGCGTCGAAGCCGCTTATGCCCGAGCCAAAGCGCGCAAACggg < 1:1143230/145‑1 (MQ=14) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAAGGCGCGCAAAggggc > 2:513541/1‑150 (MQ=255) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACggg > 7:888942/1‑150 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGCGCAAAAGCCAGAAAACCGGAAc > 4:1446003/1‑150 (MQ=14) cccccccccccgccgCAGCCGCTATCGCCCGCTCCAAAGCCCGCAAGCTGGAACAGCAACAGCCTAATGCGCATGCATCCACACACGTCGTGCCCCCCAAAGCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa < 5:1144802/142‑1 (MQ=255) aGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAGAGCAGCCGTCCAAGCCGCTATTGCCCGAGCCACCGCGCGCACCCGGGAACAGCac > 5:1377356/1‑150 (MQ=14) gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGACGCGGCTATTGCCCGCGCCCACGCCCGCAAACCGGCCCAGCAGCAGGCtt > 6:697038/1‑150 (MQ=14) gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGCGCAAAGGCCAAAAAACGCGAACAGCacaaggaa > 2:759579/1‑143 (MQ=14) tCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAACGCGCGCAAACGGGAACAGCACCCGGCTa > 5:1318642/1‑150 (MQ=255) ccccagccgcgcccgCCCGCGCCAAAGCTCTCAAGCTGGAACAGCAACAGGCTAATGCCGATGCTCACGAGCGCGTCGAGCCGAGAACTGCGGCCTTCCCATCCGCTATCGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTaa < 7:1325542/137‑1 (MQ=2) gAAGCCGCTATTGCCCGTGCCAAAGCAAGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAGGTAGATCAGCGCAAAGCGGCAGTAGACGCCGCTAATGCCCGAGCAAAAGCGAAAAAACACGACCAGCAACAGGATAAt > 8:1292945/1‑150 (MQ=14) cGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCCAAGCGCGCAAACCGGAACCGCACCCGGCTAATGccg > 7:614350/1‑147 (MQ=14) cGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCGAAAGCCAGCAAACGCGACCAGCACAAGGCTaaagacgac > 2:1738836/1‑144 (MQ=14) cTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCACCCGGCTAATGCGGAG‑cc > 5:499762/1‑151 (MQ=255) cTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGCGCCCAAGCCCGCAAACGGGCACAGCACCACTCGAATGCGGTG‑cc > 1:339080/1‑151 (MQ=14) cTATCGCCCGCGCCAAAGCGCGCAAGTTGGAACAGCAACAGGCTAATGCGGAGAGATCGGAAGAGCTCGCGGCTCGACTCGACTCCCTCGGCGCCGGTAGTGCCGGAGCCATAGCGCGCAAACTAGAACAGCAACCGGcgtgtgggggggg > 6:156981/1‑139 (MQ=2) cTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGGAGGAGCAGCACGCGGCTATGGCggcccg > 1:597074/1‑147 (MQ=14) tATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGCGCCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTCGACGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGACCCGCGAGCGGCtgaggccgcggcg > 5:1203755/1‑139 (MQ=11) tATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAAGGGGAACAGCAACCGGCTAATGCGGAG‑cc > 1:1455511/1‑150 (MQ=255) aTTGCCCCTGCGAAAGACGGCAAGCAGGAAACCCCTCAGGCCAACCGCGATCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑cc < 5:1784549/149‑1 (MQ=14) tGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGAGCGCAAGCGAGAAAACGCGAACAGCACCCGGCTAATGCGGAG‑CCaga > 3:1781149/1‑150 (MQ=17) gCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTGGATCCGCGCAAAGCCGCCGTCGCCGCGGCTATTGCCCGCGCGAACGCGCGCAAACCGGAGCACCCACCCGCGACTGCGGGG‑CAaga > 2:206856/1‑149 (MQ=14) gCCCGCGCCACAGCGCGCCAGCTTGAACAGCAACCGCCTACTCCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCagaag < 5:90625/151‑1 (MQ=14) gTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGAAGCGGCTATTGCCCGCGCAAAAGCCAAAAAACACGACCAGCAACCAGCTCATGAGCGA‑CCAGaacaac > 3:1139755/1‑150 (MQ=2) gCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCCGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGACCAGCACCAGGCTCTTGCGGAG‑CCAGAAGACCAGGtgcct > 5:326434/1‑146 (MQ=14) aCGCAAGCGGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTTGATCCCCGCAAAGCCGCCGTTGCAGCCGCTATTGCCCGCGCCCAAGCCCGCAAACCGGCACCGCAACCGGGTAATGAGGAG‑CCAGAACAACAGGTTggaaac > 4:1035850/1‑146 (MQ=255) gCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCGAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGCTCcg‑cg > 6:341501/1‑151 (MQ=255) cAAGCTTGAACCGCAACATTCTAATTCGGATCCAGAACTACACTACCATACGCGCATCGCAGCTGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCg‑cgc < 4:1237535/151‑1 (MQ=18) cAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAACGGGACCAGCAACAGGGTAATGCGGTC‑CCACAAGACCAGGTTGATCCg‑cgc > 1:860411/1‑151 (MQ=14) aGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGCGCAAAAGCGAGCAAACGGGAACAGCAACAGGATATTGACGAG‑CCAGAAGACCAGGtggctcaaccca > 4:1259971/1‑139 (MQ=11) tGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCCACGCGAGAAAAGGCGACCAGCAACAGGGTAAAGCCGAG‑CAAGAAGAACAGGtacaaaagcgaaaagc > 3:278436/1‑136 (MQ=14) tGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTGGAAGCCGCTATTGCCCGCGCGAAGGCCCGCAAACGCGAACACCAACCCGCAAAGGACGCA‑CCACAAGACAAGCTTGATCCT‑CGCAAAGc > 7:373135/1‑151 (MQ=9) ggAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAGCCGCCGTAGCCGCCGCTATTGCCCGCGCAAACGCCCGGATCCGGGCAGCGCACCTGGGAACTCCCGTG‑CCTCAGGAGCAGGTGGATCCG‑CGCACAGcg > 5:1653556/1‑150 (MQ=2) caccccaacccgCTCATGCCGAACCAGAACAACATGTCGATCATCGCAAAGCCGCCGTCGAAGCCGCTATTTACCGAGTCAAAGCTCGCAATCGTGAACAGGAATCGGCTAATGCGGAT‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGc < 4:333053/140‑1 (MQ=14) aaCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTAGAAGCGGCTATTGCCCGAGCAAGCAAGAGCATCCTGGAACCAAAACCGGATAAGGAGATT‑CGAGAAGAACAGGTTGCGCCG‑AGCaaaaata > 4:754940/1‑146 (MQ=2) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGCGCCCACGCGCGCAAACGCGAACAGCACCCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTccc > 4:447577/1‑151 (MQ=14) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAGCAGGATAATGCGGAG‑CAAGAAGAAGAGGTTCCTACC‑CGCAACGCtcctgt > 7:781041/1‑143 (MQ=14) aGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGACCAGCACCCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCAG‑CGCAACGCTGCCGTCgccgc > 6:740511/1‑147 (MQ=17) aGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCtccagtggacgc > 7:347231/1‑140 (MQ=255) ggCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCTCGCAAGCGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTAGAAGCg > 4:1800406/1‑151 (MQ=255) tAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCACGCGCCAAAGCGCGCAAGCGGGAACAGCAACCGGCTAATGCGGAT‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTAGCAGCGGCt > 8:1769509/1‑151 (MQ=14) tGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTGGCCGCGGCTAtt > 1:27820/1‑151 (MQ=14) tGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAACGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAG‑CCCGAAGAACAGGTGGATCCG‑CGCAAAGCTGCCGTGGCAGCGGCTAtt > 6:1415744/1‑151 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAACCCGCCGTCTAAGCCGCTATTGCCCGAGCCAACGCGCGCAAACGGTAATAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTg < 3:1634302/151‑1 (MQ=255) cggaaccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGACAACGGAAGAG‑CCTCGAGAACAGCAAGATACG‑AGCAAAGAGGCATTCGAAGCGTCTATGGc > 3:409362/6‑151 (MQ=0) ccGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCGAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTAGAAGCGGCTATTGc > 2:1288851/1‑151 (MQ=255) cGAGCCACAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACCAGAACAGCACCCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGCTCCC‑CGCAAAGCAGCCGTAGCACCGCCTATTGc > 2:1045692/1‑150 (MQ=14) gCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgc > 1:1649411/1‑151 (MQ=255) gCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGACAAAGCGCGCAAACGCGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGGTGATCCG‑AGCAAAGCTGCAGTCGAAGCGGCTATTGCAcgc > 1:773873/1‑151 (MQ=255) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGAGAAAACGGGAACAGCAACAGGCTAATGCGGAG‑CCAGAAGACCAGGTTCATCCG‑CGCAAAGCTGCAGAGGAAGAGCCTATTGCAcgcg > 6:148946/1‑151 (MQ=14) aGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCGGGAACAGCAACAGGCTAATGCGGAG‑CCAGAAGACGAGATAGATGCG‑CGGAAGGCTGCCGTCGAAGCGGGTATGTCACGCTcc > 8:1597887/1‑151 (MQ=11) gAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTAGACGCGGCTATTGCACgcgcg > 3:613792/1‑149 (MQ=255) ccccccaGGCCGATCCCCGCAAACCTGCCTTTGAAGCAGCTATAGCCCGCGCCAAAGCGCGCAACCGGGAACAGCAACAGGCTAATGCGGAT‑CCAGATCAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCaa < 5:13965/146‑1 (MQ=11) aacaacAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CAAGAAGAACAGGTAGATCCG‑CGCAAAGCTGCAGTAGCCGCGGCTATTGCCcgcgacc > 3:1810000/1‑147 (MQ=14) agaacaGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCAAAAGCAATAAAACAGGAACAGCACAAGGATAATACCGAA‑CCATAACAACAGGTAGATCAT‑CAAAAAGCTGAAGTGGAAGAGGCTATTCCAAgcgcaac > 4:1060640/3‑147 (MQ=2) caacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCagaaga < 7:1171104/98‑1 (MQ=255) caacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGACGCGGCTATTGCCCGCGCCaacg > 7:1591717/1‑149 (MQ=255) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCAG‑CGCAAAGCTGCAGTAGACGCGGCTATTGCACGCGCAAAAGc > 8:309386/1‑150 (MQ=14) cctccccccccGCGCAAAGCCGCCGTCGAATCCTCTATTGATCGTGCCACACCGCTCAACTTGTAACACCAATAGTCTAATGCGGAT‑CCAGACGATCATGCGCACTCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCAc < 3:896149/142‑1 (MQ=255) caGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCa > 1:209759/1‑150 (MQ=255) ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGCAGCGGCTATTGCACGCGCCAAAGCACGc > 2:1317983/1‑151 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTAGAAGCGGCTATTGCACGCGCTAAGGCaaga > 2:1235529/1‑147 (MQ=17) cgcccgccccgcaccgccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAACCGGGAACAGCAAGCCGGTACTGGCGAT‑CCAGACGCAGAGGTTGATCGG‑CGCAAAGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCa < 5:950383/136‑1 (MQ=14) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAagcaagca > 5:1589137/1‑150 (MQ=255) cgcgccGCGCAAAGCCTCCGTCGAAGCCGCTATTGCCCGCCCCTACGCCGGCCTGAGTGCAGAGCAGACGTGTTATGTTCAG‑ACATAACAACAGGTCGATCCG‑CGCAAAGCTGCTGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 6:567563/147‑1 (MQ=9) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCGGGAACAGCAACAGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTCGACGCGGCTAATGCACGCGCAAAGGCACGCAAGc > 4:980967/1‑151 (MQ=14) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAACGCACGCAAGc > 6:922946/1‑151 (MQ=255) cccccccccccgccgccGTCGAAGCCGCTATTGCCCGAGCCAAACCGCGCAAACCCGAACAGGCACCGGATTTACTGGAGTGCCGACG‑TGA‑GCTCTTCCGTCGTAAAGCGGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCt < 5:838138/140‑1 (MQ=9) aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCGGCCGTCGACGCGGCTATTGCACGCGCAAAGGccagaaagcg > 2:918344/1‑142 (MQ=17) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTAGCAGCGGCTATTGCACGCGCAAACGCaataaagcagg > 3:1087373/1‑141 (MQ=17) gcAAAGCCGCCGTCGAAGCCGCTATTTCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCCGCTAATGCGGAG‑CCAGAAGAACAGGTTGATACG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGccacaaagcgcgacc > 7:1056415/1‑136 (MQ=17) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACa < 6:1152101/85‑1 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACa < 2:410705/151‑1 (MQ=255) cAAACCCCCCGCCGCAGCCCCTATTGCCCGAGCCAAAGCGCTCAATATTTAACAGCAACAGGCTAATGCGGAT‑CCATAAGAACAGGTGGATCCG‑CGCAAAGCTGCCGTCGAAGAGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAg < 2:1205118/151‑1 (MQ=11) aaaGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTCGAAGCGGCTATTGCCCGCGCGAAAGCACGCAAGCTGGCACAGc > 6:507017/1‑151 (MQ=255) gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg > 1:1616229/1‑151 (MQ=255) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCGAAAGCACGCAAGCTGGACCAGCACCAGGCt > 7:1548957/1‑151 (MQ=255) gTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCGAAAGCACGCAAGCTGGAACAGCACCAGGCt > 7:1821778/1‑150 (MQ=255) tctaatcccatATTGCACGAGCCACAGCTCGAATATTGGAAAATCAATTTGCTAATTCGTAG‑CTATTACTATATGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTa < 2:1510156/140‑1 (MQ=9) cGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGACGCGGCTATTGCACGCGCCAAAGCCCGCAAGCTGGAACAGCACCAGGCTCAt > 1:1370297/1‑151 (MQ=255) gcaGCCGCTCGTGCCCGAGCCAAAGCTCGCAAGCTGGACCAGCAACCGGCTATTGCGGAG‑ACAGACGACCCGGGCGAGCCG‑CGCAAAGCGGCGGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 5:431821/149‑1 (MQ=11) gcaGCCGCTAGACCCCGAGCCAAAGCGAGCAAGCTGGACCAGCAACCGGCTAATGTGGTG‑AGTGAATCTCATTGTGAGCCG‑GGCTAAGCCGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 6:827277/149‑1 (MQ=2) gAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAg < 8:1325448/60‑1 (MQ=255) gAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGACCAGCACCAGGCTAATg > 2:272189/1‑151 (MQ=255) aaGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATCCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTAGAAGCGGCTATTGCCCGAGCAAAAGCCCAAAAGCACGAACAGCAACAGGATaaac > 8:700202/1‑148 (MQ=18) cTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAcc > 1:694343/1‑151 (MQ=255) gCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGATCAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCaga > 5:1459340/1‑149 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCAAAAGCACGCAAGCACGAACAGCAACAGGCTAATGAGCTACCagaaga > 3:795188/1‑150 (MQ=255) aGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCCCGCGCCAACGCACGCAAGCAGGCACAGCACCAGGCTAATCCGGAGCCagaagatctg > 1:1090854/1‑147 (MQ=25) | AAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAG > NC_000913/1708756‑1709051 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |