Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,708,910 | 0 | G | C | 22.0% | 400.8 / 25.5 | 251 | A664A (GCG→GCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
Reads supporting (aligned to +/- strand): ref base G (136/41); new base C (44/6); total (190/61) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.13e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 263 total aligned reads displayed.
ACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCC > NC_000913/1708760‑1709059 | aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCTCGCAAGCGGGAACAGCAACAGGCTACTCCCGCCCCAGAAGAACAGGTGGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGGGCCACAgcg > 5:20617/1‑151 (MQ=11) aGGTCGATCCGCGCAAAGCGGCCGTGGAAGCGGCTATTGCCCGAGCGAAGGCCCGCAAGCTGGCACAGCAACAGGGTGTTGCCGAGCCAGAACTACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCGGCTATTGCACGCGCGCATgcgcg > 7:105381/1‑151 (MQ=11) ggTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCAGGAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAGGTAGATCATCGCAAAGCCGCAGTAGCCGCCGCTATTGACAGAGCGAAAgcgaa > 3:1558656/1‑148 (MQ=14) tgATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACGAAAGATCGAGCAGAACGAAACCACAGTAGACGAGACTATTGCACGAGCGAAAGCCCGaaac > 2:227518/2‑150 (MQ=12) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGCACGCAAGCTGGGCCAGCCACCGGCTAATGCCGACCGTCAAGAACAGGTCGCTCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGCGCGCACgcgcgccgcg > 1:869599/1‑147 (MQ=11) ccgccgaaaCCCCCCGTCCAAGCCGCAACCGCCCGAGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTGGATCCGCTCAAAGGCGGCGTCGAAGCCGCTTATGCCCGAGCCAAAGCGCGCAAACggg < 1:1143230/145‑1 (MQ=14) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAAGGCGCGCAAAggggc > 2:513541/1‑150 (MQ=255) gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCGGCCGTGGAAGCGGCTATTGCCCGCGCGCACGCGAGCAAAcccga > 4:1529403/1‑146 (MQ=11) aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGCGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGACGCGGCTATTGCCCGAGCCCACGCGCGCAAACCGGC‑CCAGc > 7:1441389/1‑151 (MQ=11) aGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAGAGCAGCCGTCCAAGCCGCTATTGCCCGAGCCACCGCGCGCACCCGGGA‑ACAGCac > 5:1377356/1‑150 (MQ=14) gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCGAAAGCGCGAAAACCGGA‑CCAGCACCAGGCt > 1:447461/1‑150 (MQ=14) gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCAGAAGTCGCAGCCGCTATTGCCCGCGCCAAAGCCAACAAACCCGA‑ACAGCagcagcgt > 1:301331/1‑143 (MQ=14) tCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAACGCGCGCAAACGGGA‑ACAGCACCCGGCTa > 5:1318642/1‑150 (MQ=255) gAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCCGCGGCTATTGCCCGCGCCAACGCCCGCAAACCGGA‑ACAGCACCCGGCTAATg > 6:733978/1‑151 (MQ=14) aGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCCGCCGCTATTGCCCGCGCCCACGCGCCCAAACGCGA‑CCAGCAACCGGGTAATGCg > 5:964338/1‑151 (MQ=17) cGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCGAAAGCCAGCAAACGCGA‑CCAGCACAAGGCTaaagacgac > 2:1738836/1‑144 (MQ=14) gCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTAGATCCGCGCAAAGCGGGCGGAGCAGCCGCGATGTCACCAGCCGTACCTCGCCAGCGGGG‑ACCGCAACCGGCTAATGCGGAG‑c > 1:559207/1‑151 (MQ=9) cTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCACCCGGCTAATGCGGAG‑cc > 5:499762/1‑151 (MQ=255) cTATCGCCCGCGCCAAAGCGCGCAAGTTGGAACAGCAACAGGCTAATGCGGAGAGATCGGAAGAGCTCGCGGCTCGACTCGACTCCCTCGGCGCCGGTAGTGCCGGAGCCATAGCGCGCAAACTAGA‑ACAGCAACCGGcgtgtgggggggg > 6:156981/1‑139 (MQ=2) tATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGCGCCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTCGACGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGA‑CCCGCGAGCGGCtgaggccgcggcg > 5:1203755/1‑139 (MQ=11) tATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAAGGGGA‑ACAGCAACCGGCTAATGCGGAG‑cc > 1:1455511/1‑150 (MQ=255) tATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGCGCGAACGCGCGCAAACCGGA‑ACAGCACCAGGCTCATGCCGAG‑cc > 6:1528005/1‑150 (MQ=14) aTTGCCCGTTCCAAAGCACGCAAGATGAAACACCAACTCTCTAATGCGGATCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑cc < 2:1027973/149‑1 (MQ=14) aTTGCCCCTGCGAAAGACGGCAAGCAGGAAACCCCTCAGGCCAACCGCGATCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑cc < 5:1784549/149‑1 (MQ=14) tGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAAGAGCGGTAGATCCCCCGTAAGAAGGCGTCTCACGCGCGAGAGGCGGCGCCAAAGCGCGCAGGGGGGA‑AAAGAAACCGGCTAATGCGGGG‑cgcgcgggggcg > 7:99947/1‑140 (MQ=2) tGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTGGAAGCCGCTATTGCCCGAGCGAAGGCGAGAAAACGCGC‑CCAGCACAAGGCTCATGCCGAG‑CCcgaagacgtg > 1:1725287/1‑147 (MQ=14) gCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCCGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGA‑CCAGCACCAGGCTCTTGCGGAG‑CCAGAAGACCAGGtgcct > 5:326434/1‑146 (MQ=14) gCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGCGCAAAAGCCAAAAAACGAGA‑ACAGAAAACCGAGAATGAGGGA‑AAAGAAGAACAGGTTGATc > 4:898971/1‑151 (MQ=9) agcgaaccTGGAACACCAACAGGCAACTCCCGACCCAGAACAACTTGTCGATCCACGCAAAGCAGCCGTTGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCcg < 8:564954/144‑1 (MQ=18) aCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAACGGGA‑ACGGCAGACGGCAAATCTGAAG‑CCCGAACACCAGGTTGATCcg > 1:821339/1‑151 (MQ=14) gCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGCGCGAACGCGCGCAAAAGGGA‑ACAGCACCCGTCTAATGCGGAG‑CCACAAGCGCACGTTGCTCcg‑cg > 7:1812936/1‑151 (MQ=14) aaGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAACGCGCGCAAACGCGA‑ACAGCACCAGGCTCATGCGGAG‑CCAGAAGACCAGGTTGCTCCg‑cgc > 7:1078715/1‑150 (MQ=14) cggtgctaccgctaCAGGCTAATGCCGACCCAGATGTTGTTTTGGATCCGCTCAAAGCCGCCGGCGAATCCTCTTTTGCGAGTGGCATTGAGAGCTTTGGTGA‑TCAGCTATAGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCaa < 1:231229/138‑1 (MQ=255) cTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGAGCACAAGCGAACAAACCCGA‑ACAGCAACAGGCTAAAGCCGAG‑CCAGAACAACAAGTAGATCCG‑CACaa > 4:1250123/1‑149 (MQ=11) tGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGCGCCAACGCGCGCAAACCGGA‑ACAGCACACGGCTTATGCGGAG‑GCAGAAGACCACGTTGCTCCG‑CGCACAGc > 7:95458/1‑151 (MQ=14) ggAACAGCAACAGGCTAATTATGATACAGAAAACCAGTTCGATCCGAGCAAATCTTTCGTCTAATCTGTTATTGTACTAGACTATGTTCGGATCTTGTA‑ACAGCAACAGGCTAATGCGGAT‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCt < 8:1796200/151‑1 (MQ=2) ggAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAGCCGCCGTAGCCGCCGCTATTGCCCGCGCAAACGCCCGGATCCGGGC‑AGCGCACCTGGGAACTCCCGTG‑CCTCAGGAGCAGGTGGATCCG‑CGCACAGcg > 5:1653556/1‑150 (MQ=2) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGCGCCCACGCGCGCAAACGCGA‑ACAGCACCCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTccc > 4:447577/1‑151 (MQ=14) cAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCAAAAGCCCGCAAACGGGA‑ACAGCAACATGCTAATGCGGTG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGc > 2:294892/1‑149 (MQ=17) ggCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCTCGCAAGCGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTAGAAGCg > 4:1800406/1‑151 (MQ=255) aaTGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGCGCCAAAGCCAGCAAACCCGA‑ACAGCACCAGGCTAATGAGGAG‑CCAGAAGAACACGTGGATCCA‑CGCAAAGCGGCAGAGGAAGCGCCt > 2:1097660/1‑150 (MQ=11) tGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAACGCGCGCAAACGGGA‑ACAGCAACAGGCTAATGCGGAG‑CCCGAAGAACAGGTGGATCCG‑CGCAAAGCTGCCGTGGCAGCGGCTAtt > 6:1415744/1‑151 (MQ=14) cggaaccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGA‑ACAGCAACAGACAACGGAAGAG‑CCTCGAGAACAGCAAGATACG‑AGCAAAGAGGCATTCGAAGCGTCTATGGc > 3:409362/6‑151 (MQ=0) ccGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCGAAAGCGCGCAAACGGGA‑ACAGCAACAGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTAGAAGCGGCTATTGc > 2:1288851/1‑151 (MQ=255) gCCAGCAGACCAGGGCGCTCCGCCCATACCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAATCGGGA‑ACAGCAACAGGCTAATGCGGAG‑CCAGAAGAACAGGTGGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgc < 5:639984/151‑1 (MQ=14) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACAGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGCCGCGGCTATTGCCCgcgc > 6:78629/1‑151 (MQ=255) aGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGA‑ACAGCAACAGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACgcgcg > 3:1774096/1‑150 (MQ=255) aGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCGGCAGTAGCCGCGGCTATTGCCCGCGcc > 8:829034/1‑151 (MQ=14) ccccccaGGCCGATCCCCGCAAACCTGCCTTTGAAGCAGCTATAGCCCGCGCCAAAGCGCGCAACCGGGA‑ACAGCAACAGGCTAATGCGGAT‑CCAGATCAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCaa < 5:13965/146‑1 (MQ=11) aacaacAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CAAGAAGAACAGGTAGATCCG‑CGCAAAGCTGCAGTAGCCGCGGCTATTGCCcgcgacc > 3:1810000/1‑147 (MQ=14) agaacaGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCAAAAGCAATAAAACAGGA‑ACAGCACAAGGATAATACCGAA‑CCATAACAACAGGTAGATCAT‑CAAAAAGCTGAAGTGGAAGAGGCTATTCCAAgcgcaac > 4:1060640/3‑147 (MQ=2) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGA‑ACAGCAACAGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCAG‑CGCAAAGCTGCAGTAGACGCGGCTATTGCACGCGCAAAAGc > 8:309386/1‑150 (MQ=14) acaGGTCGATCCGCGCAAAGCAGCCGTAGAAGCGGCTATTGCCCGCGCCAAAGCCAGCAAACTGGA‑CCAGCAACAGGATAAATCCGAC‑CCATAAAAACAAGTATATACT‑CCAAAATCGGCTGTTTCATCGGCAATTGCACGCGCaaatga > 8:1555911/1‑147 (MQ=2) cctccccccccGCGCAAAGCCGCCGTCGAATCCTCTATTGATCGTGCCACACCGCTCAACTTGTA‑ACACCAATAGTCTAATGCGGAT‑CCAGACGATCATGCGCACTCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCAc < 3:896149/142‑1 (MQ=255) caGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTCGAAGCGGCTATTGCACGCGCGAAAGCa > 2:141205/1‑150 (MQ=255) ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGCAGCGGCTATTGCACGCGCCAAAGCACGc > 2:1317983/1‑151 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGc > 5:1028161/1‑150 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTAGAAGCGGCTATTGCACGCGCCAAAGCACGc > 8:1319553/1‑150 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTAGAAGCGGCTATTGCACGCGCTAAGGCaaga > 2:1235529/1‑147 (MQ=17) ccGAGCCGCGCAAAGCCTGCTTCGAAGCCGCTCTTGCCCGAGCCAAAGCTCGGCAGCGCGA‑CGAGGAACGCGCTATTGTCTAG‑CCAGATGAACAGGTCGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCaa < 7:360671/150‑1 (MQ=9) cGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTACTGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGCAGCGGCTATTGGCCGCGCAAAcgcacgca > 6:558277/1‑149 (MQ=17) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAACGCACGCAAGc > 6:922946/1‑151 (MQ=255) caTCCGCGCAAAGCCTCCGTCGAAGCCGCTATTGCCCGAGCCAAATCTCGCAAGCGAGA‑AGAGCTCCCCCCTAATCGCGAC‑CCAGAACAACAGGTCGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGc < 7:520649/150‑1 (MQ=14) cccccccccccgccgccGTCGAAGCCGCTATTGCCCGAGCCAAACCGCGCAAACCCGA‑ACAGGCACCGGATTTACTGGAGTGCCGACG‑TGA‑GCTCTTCCGTCGTAAAGCGGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCt < 5:838138/140‑1 (MQ=9) accccctccccccccccgTCGAAGCCGCTATTTCCCGATCCAAAGCTCGCAATCCGCA‑ACAGCAACAGCCTAATGCGGAG‑CCAGAAGAACACGACGATGCG‑CTCAATCCCTCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCt < 3:255017/136‑1 (MQ=255) aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCt > 3:591583/1‑151 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTAGCAGCGGCTATTGCCCGCGCCCAAGCCCGaaacc > 4:1337046/1‑147 (MQ=17) ccccccccccgccgccTGCGAACCCGCTAGCGCCCGCGCCAAAGCTCGCAATCGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAACAACAGGTGGCTCCC‑CTCAAATCATCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTg < 7:850455/141‑1 (MQ=255) cccGCGCAAAGCCGCCTTCGAAGCCGCTATTGCCCGAGCCAAACCCCTCTACGGCGACACTGC‑AGCGCATAAGGGTGAG‑CCAGACCTCCAGGTCGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTg < 1:644959/150‑1 (MQ=255) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGCAGCGGCTATTGCACGCGCCAACGCACGCAAGCggg > 6:391294/1‑151 (MQ=255) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTGGCCGCGGCTATTGCCCGCGCGAAGGcccaaaacctgg > 3:776841/1‑140 (MQ=14) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTAGCAGCGGCTATTGCACGCGCAAACGCaataaagcagg > 3:1087373/1‑141 (MQ=17) gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCGAAAGCCCGCAAGCTGGac > 6:294583/1‑150 (MQ=255) ccgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTAGCAGCGGCTATTGCACGCGCGCAAGCCAGAAAGCTGGAACAGCacc > 4:1024860/1‑148 (MQ=17) gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg > 1:1616229/1‑151 (MQ=255) gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACCGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGATGATCCG‑CGCAAAGCTGCAGTAGAAGCGGCTATTGCACGCCCAAAAGCACCCAAACACGAACAGCAACAgg > 4:351758/1‑151 (MQ=17) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCGAAAGCACGCAAGCTGGACCAGCACCAGGCt > 7:1548957/1‑151 (MQ=255) gTCGAAGCATATATTTACCGATACACAGCCCTCAAACTTGA‑ACAGAAACCCGCTAATTCTTAG‑CCAGAAGTACTCTGTTATGAT‑CTCAAAGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTa < 2:955681/151‑1 (MQ=2) cGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGACGCGGCTATTGCACGCGCCAAAGCCCGCAAGCTGGAACAGCACCAGGCTCAt > 1:1370297/1‑151 (MQ=255) gcaGCCGCTCGTGCCCGAGCCAAAGCTCGCAAGCTGGA‑CCAGCAACCGGCTATTGCGGAG‑ACAGACGACCCGGGCGAGCCG‑CGCAAAGCGGCGGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 5:431821/149‑1 (MQ=11) cccccgcccgagCCCGAGCCAAAGCGCGCAAACTGGA‑ACAGCAACAGGCTAATCCGGAG‑CCAGAAGAACAGGTGGATCCG‑CGCAAAGCTGCCGTCGAACCCGCTATTGCACGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGc < 2:707385/140‑1 (MQ=11) cgCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAT‑CCAGAAGAACGCCGTGATCGC‑CTCACAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCg < 6:12678/150‑1 (MQ=17) gCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGTAc > 7:1258661/1‑151 (MQ=255) aTTGCCCGACCCAAACCGAGCCAACGGGA‑AGACCAAGCGGCTACTGCCGAT‑CCAGAAGAACAGGTCGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCag < 7:1590700/151‑1 (MQ=17) gCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGATCAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCaga > 5:1459340/1‑149 (MQ=255) gCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCaga > 1:73207/1‑149 (MQ=255) cacGAGCCAAAGCGCGCATCGGCGC‑ACTGAAACCGGGTAATCCCGAG‑CGATCATAAGAGGTCGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 6:691500/149‑1 (MQ=17) cgttcctaaGCTCGCAAACGGGC‑ACAGCAACCGGCTAATCCTTAG‑CCAGAAGAACAGCTCGATACG‑AGCATAGCCGGCGGCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAAc < 3:1146158/144‑1 (MQ=17) cGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTCGAACAGCATCAGGCTAATCCCGAACCAGAAGAAc > 8:161363/1‑151 (MQ=25) cGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAAc > 2:204528/1‑151 (MQ=255) aGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCCCGCGCCAACGCACGCAAGCAGGCACAGCACCAGGCTAATCCGGAGCCagaagatctg > 1:1090854/1‑147 (MQ=25) aGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAAc > 5:922675/1‑149 (MQ=255) ccAAAGCGCGCAAGCTGGA‑ACAGCAACAGGCTAATGCGGAT‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCa < 4:1194333/92‑1 (MQ=11) ccAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCACCAGGCTAATCCGGTACCAGAAGAACACGt > 2:793973/1‑151 (MQ=255) ccAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGt > 1:1643937/1‑151 (MQ=255) cacctcgcggAAACTTGA‑ACAGGAACCTGATTATGAGGAG‑CCTGATGAACAGTTTGATACG‑CGAAAAGATGGCTTCTATGCGGATATTGCACGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGtt < 7:266181/146‑1 (MQ=12) cAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCGAAAGCACGCAAGCAGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGtt > 2:456700/1‑151 (MQ=255) aaaGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCGAAAGCAAGCAAGCTCGCACAGCAGCAGGCTAATGCGGTACCAGAAGAACACGttc > 7:71928/1‑150 (MQ=37) aGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTAGAAGCGGCTATTGCACGCGCAAAAGCACCCAAGCTGGAACAGCAACAGGCTAAAGCGGAACCAGAAGAACAGGtacat > 3:1567412/1‑147 (MQ=17) cgcgcAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCAGTCGAAGCGGCTATTGCACGCGCGAAAGCACGCAAGCTGGAACAGCAGCAGGATAATGCCGTACGAGCAGAACAGGttcctcc > 4:629375/1‑146 (MQ=17) | ACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGA‑ACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCG‑CGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCC > NC_000913/1708760‑1709059 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |