BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,673,557	Δ120 bp	intergenic (‑56/‑237)	mdtJ ← / → tqsA	multidrug efflux system transporter/pheromone AI‑2 transporter

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1673557	1673676	120	470 [1]	[0] 471	mdtJ/tqsA	multidrug efflux system transporter/pheromone AI‑2 transporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1673556	1 (0.000)	459 (1.020)	227/296	0.0	99.9%	intergenic (‑55/‑357)	mdtJ/tqsA	multidrug efflux system transporter/pheromone AI‑2 transporter
*	?	NC_000913	1673677 =	0 (0.000)	459 (1.020)	227/296	0.0	99.9%	intergenic (‑176/‑236)	mdtJ/tqsA	multidrug efflux system transporter/pheromone AI‑2 transporter

Only 100 of 470 total aligned reads displayed.

CCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTC  >  NC_000913/1673407‑1673706

  aTTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCATCGAAACAAAtgt                                                                                                                                                     >  5:923075‑M1/1‑148 (MQ=255)

  aTTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgt                                                                                                                                                     <  7:1216427‑M1/151‑4 (MQ=255)

      cccTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaa                                                                                                                                                 <  8:1530967‑M1/151‑8 (MQ=255)

       ccTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaa                                                                                                                                                <  2:1756825‑M1/151‑9 (MQ=255)

       ccTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaa                                                                                                                                                 >  6:928261‑M1/1‑143 (MQ=255)

              gACGCTCGCCGATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTATTAAAATCCAATAAATATACATTGTCCTTCTCCTGCATGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacg                                                                                                                                          <  2:1325154‑M1/150‑15 (MQ=255)

              gACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgt                                                                                                                                         >  4:1510049‑M1/1‑136 (MQ=255)

                 gCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcct                                                                                                                                      <  7:562600‑M1/151‑19 (MQ=255)

                  cTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctg                                                                                                                                     >  4:925720‑M1/1‑132 (MQ=255)

                           ttCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattg                                                                                                                            >  4:1227345‑M1/1‑123 (MQ=255)

                            tCATTGACAGCGTACCGGTAATTTCTGTATCAATATCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattg                                                                                                                            <  7:1337345‑M1/150‑29 (MQ=255)

                            tCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattg                                                                                                                            <  3:1366487‑M1/150‑29 (MQ=255)

                            tCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattg                                                                                                                            <  5:21502‑M1/150‑29 (MQ=255)

                            tCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattg                                                                                                                            <  5:5978‑M1/150‑29 (MQ=255)

                             cATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtc                                                                                                                          >  1:1616212‑M1/1‑121 (MQ=255)

                              aTTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtcc                                                                                                                         >  7:141032‑M1/1‑120 (MQ=255)

                                tGACAGCGTACCGGTAATTTCTGTAGCATTAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtag                                                                                                                                                   <  8:1196068‑M1/123‑6 (MQ=255)

                                 gACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccata                                                                                                                      <  3:9377‑M1/151‑35 (MQ=255)

                                   cAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataat                                                                                                                    >  8:869999‑M1/1‑115 (MQ=255)

                                   cAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGAGAAACCAAtgtagaaaataacgtcctgaacaaattgtcaataa                                                                                                                     >  5:522486‑M1/1‑115 (MQ=255)

                                     gCGTACCGGTAATTTCTGTAGCAATATCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatat                                                                                                                  <  5:1646850‑M1/151‑39 (MQ=255)

                                       gTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatatt                                                                                                                 >  6:646851‑M1/1‑111 (MQ=255)

                                          ccGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtgcataatattaca                                                                                                              >  6:172103‑M1/1‑108 (MQ=255)

                                            ggTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATATTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaatt                                                                                                           <  8:1771683‑M1/151‑46 (MQ=255)

                                              tAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGACAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattat                                                                                                         >  7:428253‑M1/1‑104 (MQ=255)

                                               aaTTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatc                                                                                                        <  7:1742373‑M1/151‑49 (MQ=255)

                                               aaTTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattata                                                                                                        <  3:1670036‑M1/151‑49 (MQ=255)

                                               aaTTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattat                                                                                                         <  2:1405270‑M1/150‑48 (MQ=255)

                                                 tttCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccg                                                                                                      >  6:15426‑M1/1‑101 (MQ=255)

                                                  ttCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccg                                                                                                      <  8:1290085‑M1/150‑51 (MQ=255)

                                                   tCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgc                                                                                                     >  8:1716371‑M1/1‑99 (MQ=255)

                                                   tCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgc                                                                                                     >  8:278326‑M1/1‑99 (MQ=255)

                                                    cTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgc                                                                                                     >  8:835148‑M1/1‑98 (MQ=255)

                                                     tGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagt                                                                                                  >  7:1656131‑M1/1‑97 (MQ=255)

                                                      gTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagt                                                                                                  <  6:25789‑M1/150‑55 (MQ=255)

                                                         gCAATAGCCAGACCTAATTAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatataacaattatccgcagtgttt                                                                                              >  7:981642‑M1/1‑93 (MQ=255)

                                                          cAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgc                                                                                             >  3:1216881‑M1/1‑92 (MQ=255)

                                                              aGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttct                                                                                         >  7:28428‑M1/1‑88 (MQ=255)

                                                               gCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctc                                                                                        >  4:641191‑M1/1‑87 (MQ=255)

                                                               cccaGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttccc                                                                                        <  2:483761‑M1/150‑65 (MQ=255)

                                                                ccAGACCTAATAATATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcg                                                                                       <  2:170469‑M1/151‑66 (MQ=255)

                                                                      cTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcg                                                                                 >  8:1640156‑M1/1‑80 (MQ=255)

                                                                        aataaAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcg                                                                               <  6:1049766‑M1/151‑74 (MQ=255)

                                                                        aataaAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcg                                                                               >  2:656540‑M1/1‑78 (MQ=255)

                                                                             aaTCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatg                                                                           >  3:782624‑M1/1‑73 (MQ=255)

                                                                              aTCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgat                                                                         <  1:1067616‑M1/151‑80 (MQ=255)

                                                                                  aataaataTACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataatt                                                                     <  5:1103189‑M1/151‑84 (MQ=255)

                                                                                     aaataTACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtc                                                                  <  8:1354823‑M1/151‑87 (MQ=255)

                                                                                     aaataTACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgt                                                                   <  7:1052877‑M1/150‑86 (MQ=255)

                                                                                         ataCATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctc                                                               <  3:237690‑M1/150‑90 (MQ=255)

                                                                                            cATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggta                                                           <  2:863882‑M1/151‑94 (MQ=255)

                                                                                             aTTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggt                                                            >  5:842308‑M1/1‑57 (MQ=255)

                                                                                               tGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagtt                                                        >  4:1114511‑M1/1‑55 (MQ=255)

                                                                                               tGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgata                                                                        <  6:18629‑M1/135‑81 (MQ=255)

                                                                                                        ccTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcc                                               <  3:43383‑M1/151‑106 (MQ=255)

                                                                                                        ccTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgc                                                <  2:36867‑M1/150‑105 (MQ=255)

                                                                                                        ccTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacg                                                 <  1:842321‑M1/149‑104 (MQ=255)

                                                                                                         cTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgctgtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcct                                              >  6:1373391‑M1/1‑45 (MQ=255)

                                                                                                           gCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacgattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctg                                             >  6:550659‑M1/1‑43 (MQ=255)

                                                                                                           gCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctg                                             <  4:1295492‑M1/150‑108 (MQ=255)

                                                                                                            cAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttggttctcgtcatcgcggatgataattgtcgtcggtagttgaaccggcgtgat                                           >  3:134748‑M1/1‑42 (MQ=255)

                                                                                                            cAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgat                                           >  3:1471823‑M1/1‑42 (MQ=255)

                                                                                                            cAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgat                                           >  1:562163‑M1/1‑42 (MQ=255)

                                                                                                             aaGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatt                                          >  3:1566277‑M1/1‑41 (MQ=255)

                                                                                                             aaGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatt                                          <  1:20845‑M1/151‑111 (MQ=255)

                                                                                                             aaGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataatagtcctcggtagttgaacacgcctgatt                                          >  2:1588630‑M1/1‑41 (MQ=255)

                                                                                                             aaGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattataagcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatt                                          >  1:1702668‑M1/1‑41 (MQ=255)

                                                                                                              agagAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgattt                                         >  7:622529‑M1/1‑40 (MQ=255)

                                                                                                              agagAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtcaataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgattt                                         <  6:1103805‑M1/151‑112 (MQ=255)

                                                                                                               gagaATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttg                                        >  1:1277370‑M1/1‑39 (MQ=255)

                                                                                                                agaATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgt                                       <  1:1397243‑M1/151‑114 (MQ=255)

                                                                                                                   attattTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatc                                    >  5:309524‑M1/1‑35 (MQ=255)

                                                                                                                    ttaatataattttCGCTTAATTCAGCGAAACCAAtgaagaaaataacgacctgaacaaattgtccataatattacaattatccgcactgttgcatctcatcatagcagatgataattctcctcggtagttaaacaaccctgattactatc                                    >  7:1829721‑M1/7‑34 (MQ=255)

                                                                                                                     tattTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatca                                   <  7:1507501‑M1/150‑118 (MQ=255)

                                                                                                                      attTTAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcata                                 <  1:41761‑M1/151‑120 (MQ=255)

                                                                                                                        tttAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatag                                <  5:183249‑M1/150‑121 (MQ=255)

                                                                                                                        tttAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctcatttgtatcat                                  >  4:1657151‑M1/1‑30 (MQ=255)

                                                                                                                          tAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagctt                             >  6:439227‑M1/1‑28 (MQ=255)

                                                                                                                          tAATTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagct                              <  5:1182162‑M1/150‑123 (MQ=255)

                                                                                                                           aaTTTTCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagctt                             <  1:100856‑M1/150‑124 (MQ=255)

                                                                                                                               ttCGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaaga                         >  1:294797‑M1/1‑23 (MQ=255)

                                                                                                                                 cGCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaatt                      <  4:508269‑M1/151‑131 (MQ=255)

                                                                                                                                  gCTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaatta                     <  4:387530‑M1/151‑132 (MQ=255)

                                                                                                                                   cTTAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaatta                     >  6:1270137‑M1/1‑19 (MQ=255)

                                                                                                                                     tAATTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaac                   <  6:807749‑M1/150‑134 (MQ=255)

                                                                                                                                     tAATTCAGAGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaac                   <  5:1489484‑M1/150‑134 (MQ=255)

                                                                                                                                       aTTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgatgattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactc                 >  3:1008788‑M1/1‑15 (MQ=255)

                                                                                                                                       aTTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactca                <  2:1171091‑M1/151‑137 (MQ=255)

                                                                                                                                       aTTCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactc                 >  8:1097908‑M1/1‑15 (MQ=255)

                                                                                                                                         tCAGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaa               >  4:787991‑M1/1‑13 (MQ=255)

                                                                                                                                          cAGCGAAACCAAtgtagaaaataacgtactgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaa              <  4:1048512‑M1/150‑139 (MQ=255)

                                                                                                                                           aGCGAAACCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaat            >  1:1432666‑M1/1‑11 (MQ=255)

                                                                                                                                           aGCGAAACCAAtgtagaaaataacgaccagaacaaattgtccataatattacaattatccgcagtgttccatctcgtcatcgcggatgataattgtcctccgtacatcaacacgcctgatttctatcatagcttaagaattaattcaaaa             >  7:84144‑M1/1‑11 (MQ=255)

                                                                                                                                                aaCCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatatttt       <  4:1811736‑M1/151‑146 (MQ=255)

                                                                                                                                                 aCCAAtgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatatttt       >  2:1076196‑M1/1‑5 (MQ=255)

                                                                                                                                                   cAAtgtagaaaatatcgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatattttcac    >  8:563008‑M1/1‑3 (MQ=255)

                                                                                                                                                    aatgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatattttcact   <  1:929421‑M1/151‑150 (MQ=255)

                                                                                                                                                     atgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatattttcactt  <  4:812163‑M1/151‑151 (MQ=255)

                                                                                                                                                     atgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatattttcactt  <  2:209668‑M1/151‑151 (MQ=255)

                                                                                                                                                     atgtagaaaataacgtcctgaacaaattgtccataatattacaattatccgcagtgttgcttctcgtcatcgcggatgataattgtcctcggtagttgaacacgcctgatttgtatcatagcttaagaattaactcaaaatattttcactt  <  8:671610‑M1/151‑151 (MQ=255)

CCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTC  >  NC_000913/1673407‑1673706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`