Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,708,7580GC27.3% 137.7 / 40.4 136E614Q (GAA→CAA) rsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base G (40/53);  new base C (7/28);  total (50/86)
Fisher's exact test for biased strand distribution p-value = 2.28e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 148 total aligned reads displayed.

GCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCA  >  NC_000913/1708608‑1708905
                                                                                                                                                        |                                                                                                                                                   
caccGCGACAACTCTCGGAATCTGGAACAGCATCAGGCTAATTCCGAAGCAG‑AACACCAGGCCGATCCGCGCAAATCCGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCagaag                                                                                                                                                     <  5:451421/149‑1 (MQ=14)
 cacgcgCAAAATCTCGCAAGCTGGAAGACCAACAGGATAATGCGGAACCAG‑AAAAAGAGGTCGATCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCagaaga                                                                                                                                                    <  5:1020337/149‑1 (MQ=14)
  ccgcgaaaaatggcggAAGCTGGCACACCAACAGGAAAATTCGGAACCAGCAACCGTTGGT‑GATCCTCGTAAATCTGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAgaagaa                                                                                                                                                   <  2:1584054/139‑1 (MQ=2)
  ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTGGATCCGCGCAAAGCGGCCGTGGACGCGGCTATTGCCCGCGCGACAGCGCCCGAGCGGCCTCACCACCAGGCTAATA‑CGCAACAataaga                                                                                                                                                    >  4:1089445/1‑150 (MQ=2)
    gcgggaacccgcgcAAGCTTCAACAGATACAGGCTAATCCGGAACCAG‑AAAACCTTGGCGATCCCCGCAAACCTGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACa                                                                                                                                                 <  6:994462/142‑1 (MQ=14)
     cgcCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAg                                                                                                                                                <  8:69934/151‑1 (MQ=40)
      gcCAAATCGCGGAAGCTGGAACAGCATCAGGCTAATCCGGACCCAG‑AACAACTGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAgg                                                                                                                                               <  2:1577384/151‑1 (MQ=14)
       ccacccctcgcAAGCTGGAAGACCAACAGGCTAATCCCGAACCAG‑CACCAGAGGTGGATCCGCGCAAACCCGCCGTCGAAGCAGCTATCGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGt                                                                                                                                              <  5:250084/143‑1 (MQ=14)
         aaccggcgcAAGCTGGAACAGCAACAGGATAATCCGGAACCAG‑AAACAGTTGCGGATCCCCGCAAAGCCGCCGTTGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCg                                                                                                                                            <  4:781542/146‑1 (MQ=14)
         aaacctcgcAATCTGGAAGACCATCAGGCTAATCCGGAAGCAG‑AACAACAGGTCGATCCTCGTAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCg                                                                                                                                            <  7:919125/145‑1 (MQ=14)
         aaaGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGAGCTAGCTAGAACCTCATCAAGCTAATGACGGAA‑CAgaagaagatatct                                                                                                                                            >  7:553087/1‑144 (MQ=11)
          aaGCGCGCAATCTGGAACACCAACAGGATAATGCGGAACCAG‑AAAAAGAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGa                                                                                                                                           <  8:1540528/151‑1 (MQ=14)
           atgtcggaaGCTGGAACATCATCAGGATAATGACGAACCAG‑AACAACATGCCGATCCTCGCAAACCCGCCGTTGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGAt                                                                                                                                          <  8:439290/144‑1 (MQ=14)
              gggcAATCTGGAACATCTTCAGCATAATTAGGAACCAG‑AAAAACTTGGGGATCCTCGTAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCcg                                                                                                                                       <  4:474413/149‑1 (MQ=14)
              gcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGACAACGGAAAAGCCTCTATTACCCAAACAAAATAGCGCAAACTGGAACAGAAACAGGGTAATG‑GATAAAAAAAAAAAAAGGTCGATCcg                                                                                                                                       >  5:1485428/1‑151 (MQ=2)
              gcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAG‑AACAACAGGTAGATCCGCTCAACGACGGCGTCGCAGCCGCTATTGCCCGTGCCAAAGCGCTCAAGCTGGAACAGCAACAGGCTAATG‑AGGATCCAGAACAAGAGGTAGATCcg                                                                                                                                       >  5:758989/1‑151 (MQ=11)
              gcgcAAGCTGGAACAGCAACAGACTAATGCGGAGCCAG‑AAGAGCACGGAACACCGACCAAAACCGACGTCGAATACGCTATTGACAATGACAAAGCGCGCAACCTGGAAAATAAAAAAACTAATG‑CGGAGCCagaagagctgggcggggcg                                                                                                                                       >  7:1603787/1‑138 (MQ=2)
               cgcAATCTGGAACAGCATCAGGAAACTCCGGAACCAG‑AACCCCAGGGGGATCCTCGAAAATCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCcgc                                                                                                                                      <  4:1119760/151‑1 (MQ=14)
                gcAAGCTGGAACAGCAACAGGATAATCCGGAACCAG‑AACACCTGGTCGATCCGCGCAAACCGGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCcgcg                                                                                                                                     <  2:771016/151‑1 (MQ=14)
                       ggAACATCATCAGGAAAATGACGACCCAG‑AACCCCTGGGCGATCCCCGGAAAGCCGCCGTCGAAGCCGCTATCGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcc                                                                                                                              <  3:1673750/151‑1 (MQ=14)
                       ggAACAGCAACAGGCTAATGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCGGAAGAGATTGCCCCTGCCCACGCGGGCCCGCTCGAACAGGACCAGGCTGTTG‑GCGCCGGAGAAGAACAGGTCGCTCCGCGCACAgcc                                                                                                                              >  8:33825/1‑151 (MQ=2)
                        gAACAGCAACAGGCTAATGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccg                                                                                                                             <  4:390502/151‑1 (MQ=40)
                        gAACACCAACAGGATACTCACGAACCAG‑AACAAGATGGAGATCCCCGCAAACCCGCCGTTGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccg                                                                                                                             <  6:1054538/151‑1 (MQ=14)
                        caaCACCACCAGGAAAATTCGGAAGCAG‑AAACACTGGTCGATCCTCGCAAACCCGCCGTCGAAGCAGCTATCGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccg                                                                                                                             <  6:1062817/150‑1 (MQ=14)
                         aaCATCAACAGGATAATGCGGAACCAG‑AACAACAGGGCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgc                                                                                                                            <  1:1493489/151‑1 (MQ=255)
                          agatcttcAGGATAATGCGGAACCAG‑AAAAAGTTGGTGATCCTCGTAAATCTGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgcc                                                                                                                           <  2:171247/144‑1 (MQ=11)
                          aCAGCAACAGGCTACTGCGGAACCAG‑CACCCGAGGGGGATCCCCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgcc                                                                                                                           <  6:480426/151‑1 (MQ=14)
                          aCAGCAACAGGCTAATGCGGAACCAG‑AACAACATGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATAGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgcc                                                                                                                           <  6:456265/151‑1 (MQ=255)
                            aGCAACAGGCTAATGCGGAACCAG‑AAGAACAGGAACATAAGCGCAAAGAGGACGTCGAAGCGGATATATAAAGTGAAAAAGAACGAAAGCTGGAAAAGCAAAAAAATAATG‑CGGAACCAGAAGAACAGGTGGAGCAgcgcgtcgcggccgg                                                                                                                         >  4:356788/1‑140 (MQ=2)
                             cctacaggaaactccGGACCCAG‑CACCCCAGGCCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTc                                                                                                                        <  6:107440/137‑1 (MQ=14)
                              cAACAGGCTAATGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGAAAGATGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGACGTCg                                                                                                                       >  4:712982/1‑151 (MQ=255)
                                aCAGGCTAATGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCGGGAACAGCAAACCGCTGATG‑CGCACACGGCTGAACTGCAGTCTCCGCGCAATGCCGCCGTCgcc                                                                                                                     >  1:864586/1‑149 (MQ=11)
                                aCAGGATAATTCCGACCCAG‑AACAACTTGCTGATCCTCGTAAATCAGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGaa                                                                                                                     <  7:1404408/151‑1 (MQ=11)
                                 caggaaactccGGAACCAG‑AAAACCAGGCTGATCCTCGAAAATCTGCCGTTGAAGCAGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg                                                                                                                    <  5:1068016/141‑1 (MQ=11)
                                  aGGCTAATGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAACCTGGAACAGCAACAGGCTAATG‑CCGAACCAGAAGAACAGGTCGATCAGCCCAAAGCCCCAGTCGaacc                                                                                                                   >  4:709950/1‑149 (MQ=11)
                                   ggatAATGCCGAAGCAG‑AACAACAGGCGGATCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc                                                                                                                  <  1:1128835/148‑1 (MQ=14)
                                   ggCTAATGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc                                                                                                                  <  3:832803/151‑1 (MQ=40)
                                   gcctaatcacgAACCAG‑AACAAGATGTCGATCCTCGTAAATCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc                                                                                                                  <  2:1197519/141‑1 (MQ=14)
                                       aaTGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACGGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa                                                                                                              <  1:581609/151‑1 (MQ=255)
                                       aaTGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAGCTGCGAGCGCAACAGCAGAATG‑CTGAACGCGACTCACCGCTCGATACGGCGAAAGCCGGCGTCgccgcgcct                                                                                                               >  3:1363685/1‑142 (MQ=2)
                                          gCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTGGATCCGCGCAAAGCCGCCGTCGCCGCCGCTATTg                                                                                                           >  6:303650/1‑151 (MQ=255)
                                          ccGGAAGCAG‑AACACGTGGGGGATCCGCGAAAATCCGCCGTCGAAGCAGCTATCGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAACAACACGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAtt                                                                                                            <  8:563054/149‑1 (MQ=11)
                                          caggAAGCAC‑AACCACAGGATGATCCACGCAAAACAGCCGTAGAAGCCGCTATTGCACGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAtt                                                                                                            <  6:1620395/148‑1 (MQ=14)
                                            cgacccAG‑AACACGATGTTGATCCACGCAAACCCGCCGTCGAAGCAGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAACAACATGTCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGcc                                                                                                         <  7:1467929/147‑1 (MQ=11)
                                              aaCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAACTGGAACAGCAACAGGCTAATA‑CATCTCAAGAACAACATCTAGATAAACACAAAGCCGAATTCGAAACCTCTATTGccac                                                                                                       >  4:1596005/1‑149 (MQ=2)
                                              aaCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCCACGCCCGAAAGGTGGCACAGCAGCAGGCTAATG‑CGGAGCCAGAAGAACAGGTCGCTCCGCGCAACGCCGCCGTTGCAGCGGCTATTGcccc                                                                                                       >  1:703446/1‑150 (MQ=11)
                                               aCCAG‑AACCACAGGTTGATCCTCGCAAAGCGGCCGTTGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGATAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt                                                                                                      <  4:1283960/151‑1 (MQ=14)
                                                  cataacaacAGTTCGATCAACGTTAAACTGTCGTCGAAGACGATATTGCTCGGTCCTAATCTCGCAAGCTGGAACAGCAACAGGATAATC‑CGGAACCAGAATAAGTTGTGGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGc                                                                                                    <  5:1250147/148‑1 (MQ=2)
                                                          caGGGCGATCCCCGGAAAGCCGCCGTCGAAGCAGCTATGGCCCGGGCCAAAGCGCGCAAGCTGGAAGAGCAACAGGCTAATG‑CGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAc                                                                                            <  8:678221/151‑1 (MQ=11)
                                                            ggTCGATCCTGGAAAATCTGCCGTAGAAGCAGCTATTTCCCGTGCAAAATCGCGCAAGCTGGAACATCAACAGGATAATT‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGc                                                                                          <  4:197328/151‑1 (MQ=11)
                                                            ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCCCGCAAGCTGGACCAGCAAAAGGCTAATG‑AGTACCCAGACGACCAGGTAGATCCGCGCAAAGCGGCCGTCTCCCACGCTATTGCCCgcgcgcacgcgcgc                                                                                          >  8:772631/1‑141 (MQ=2)
                                                               cGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCCAGCTGGAACAGCAACAGGCTAATG‑CGGAGCGAGAAGAACCGGTGGCTCCGCGCACAGCGGCCGTCGAAGCGGCTATTGCCCGGGCCagcggagggg                                                                                         >  8:927069/1‑140 (MQ=11)
                                                                gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCGGGAGCAGCAACCGGCTAATG‑CGGATCCAGAAGAACAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCCGCTATTGCCCGTGCCAACGCTCGCGAGc                                                                                      >  3:526062/1‑151 (MQ=11)
                                                                   ccccccccacccgccgGCGAACCAGCCAGTCCCCGGGCCCAAGCGCGCAACCTGGAACACCAACAGGAAAATG‑CGGAAGCAGCACACCAGGGCGATCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTgg                                                                                   <  4:275210/141‑1 (MQ=2)
                                                                   ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTg                                                                                    <  8:1315390/150‑1 (MQ=255)
                                                                     gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAGCCAGAAGAACAGGTGGATCCGCGCAACGCCGCCGGGCAGGCCTCGATTGCCCGCGCCAAAGCTCGCAAGCCGGa                                                                                  >  8:1077692/1‑150 (MQ=11)
                                                                        cAAATCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAg                                                                              <  2:609777/151‑1 (MQ=255)
                                                                          acaccgccgTCTCATCCGCTATCGCGCGCGCCAAAGCGCTCAAGCAGGAACACCAACAGCATAATC‑AGGACGCAGAACCCGATGGCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa                                                                            <  3:1109944/148‑1 (MQ=2)
                                                                          aacctgccggagAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa                                                                            <  6:763951/140‑1 (MQ=11)
                                                                          aaccggccgTGGAAGCCGCTATAGCCCGCGCAAAAGCGCGCTAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAAGAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa                                                                            <  3:235028/146‑1 (MQ=11)
                                                                          aaGCCGCCGTCGAAGCCGCTATTGACCGTGACAAAGAGCGCAAGCTGGAACAGCAAAAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCATCGCAAAGCCGCCGTCGAAGc                                                                                                                   >  4:1260876/1‑112 (MQ=14)
                                                                            cccgccgGCGAACCCGCTATTTCCCTTGCCAAAGCGCGCAAGATGCAACAGCAACAGGCTACAG‑CGGAACCACCACAACAGGTCTAGCCCCGCAAACCCGCCGTCGAAGCAGCTATCGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAAc                                                                          <  1:366572/150‑1 (MQ=17)
                                                                             gtgcggtagatcccccTATTGCCCGTGCCATCGGCGGCAAGCTGGAACACCACCAGGCTAATC‑CGGAACCAGAACAACATGGCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACa                                                                         <  6:1618178/136‑1 (MQ=11)
                                                                                ccgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAGACATAAGAACAGCTACCTCGTCGCAAAGACTCAATCGAATACTCTATTGCACGTTCCAAAGCGCGAAATATAAAAAAGCAACCGGc                                                                      >  4:1391985/1‑151 (MQ=2)
                                                                                ccgGCGAACCCGCGAATGCCCGTTCCATATCCCTCAAGCTGCACCATCAACAGCTTAATC‑CCGATCCAGAAACAGACGTCGTGCGGCCCAAAGATGTCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGc                                                                      <  3:360451/151‑1 (MQ=2)
                                                                                 cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCAAATC‑CGAAGCCAGAAGAACAGGTAAATCCGCGAAAAGATGCGGTAGAAGACGCTATTGCCCGTGACAAAGAACGAAAGCTGGAACAGCAACAGGcg                                                                     >  7:359656/1‑150 (MQ=14)
                                                                                 cgTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt                                                                     <  4:1331279/151‑1 (MQ=38)
                                                                                   gcggcgCCGCGATTGCCCCGGCCAAACCGCGCAACCTGGAACACCAACAGGATAATC‑CGGAACCAGAACACCAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTaa                                                                   <  8:108785/146‑1 (MQ=11)
                                                                                     gAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCttctg                                                                 >  3:1749787/1‑147 (MQ=255)
                                                                                     gAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCGGCTATTGCCCGCGCCAAGGCACGCAAGCGGGACCAGCACCAGGCTCATg                                                                 >  3:1497016/1‑151 (MQ=14)
                                                                                         cggcgatatcccGTGCCAACGCGCGGCAGCGGTCAGAGCAACTGGCTTATG‑CGGAACCAGCACAACATGGCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa                                                             <  8:1263634/142‑1 (MQ=11)
                                                                                           gCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAACGGACGCAAGCAGGACGAGCAACAGGCAAATGcggcgc                                                           >  2:303358/1‑146 (MQ=11)
                                                                                           gCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAACAACAGGGCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGc                                                           <  3:834812/151‑1 (MQ=255)
                                                                                             tATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGAGCAAAAGCAAGATAGCAAGAGCATCAACAAGCGAATgagggaacc                                                         >  5:360289/1‑143 (MQ=11)
                                                                                             tATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CCGAAAAAGAAAAACAGTTCTCTACGCAAAAAGCCTCCGTAGAAGACTATATTGCCCGTGACAAAGCAAGAAAGAAGTAACAGCAAGAGGCTAATGCGGAggtg                                                         >  5:705270/1‑148 (MQ=2)
                                                                                              agtcccccggaaacaGCGCGGAAGCTGGAACACCAACAGGATACTC‑CGGACCCAGAACAAGAGGCCGATCCCCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAg                                                        <  1:187192/137‑1 (MQ=11)
                                                                                              aTTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGACCCAGAAGAACAGGTAGATCCGCGCAAAGCAGCCGTCGAAGCGGCTATTGc                                                                                                          >  5:1188023/1‑101 (MQ=14)
                                                                                                ttcccGGGCCCAACCGCGCAACCTGGAAGACCTACAGGATACTG‑CGGAACCAGAACAACATGCCGATCCGCGCAAATCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGa                                                       <  3:420579/148‑1 (MQ=11)
                                                                                                tGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGTACCAGAAGAACAGGt                                                                                                                                              <  1:1531311/63‑1 (MQ=255)
                                                                                                     gggcacaaacgcgcAAGCTGGCACAGCAACAGCCTAATC‑AGGACCCAGCACCAGAGGGCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAacaaca                                                 <  8:1400349/142‑1 (MQ=11)
                                                                                                     gTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATG‑CCGAGCCAGAACAACAGGTCGATCCGCGCAGAGCGGCCGTCCACCCGGCTCTTCACCCCGCCCCCGCCCGCATCCGGGAACAGCTCCAGGCGAATCCCGACCCAGacgcccg                                                 >  8:453145/1‑145 (MQ=2)
                                                                                                      gcccAAAGCGCGAAAGCTGCAACAGCCAGCTGACACGC‑CGTAACCCGACGCCCAGTCCGATCCTCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg                                                <  8:550939/149‑1 (MQ=9)
                                                                                                        cccacccgcgcAAGCTGGAACAGCAACAGTCTAATG‑CGGAACAAGAAGAACAGGTCGATCCCCGCAAAGCCGACGTCGAATCCGCGATTGGCCCTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAggc                                              <  6:757032/145‑2 (MQ=14)
                                                                                                          actgctcccatggtGGATCAGCAACTGGATAATC‑ACGAACCAGAAACCCAGGGCGATCCTCGGAAACCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCg                                            <  8:881702/138‑1 (MQ=14)
                                                                                                                    aGCTGGAAGACCTACAGGATAATG‑CCGAAGCAGCACCCGTGGCTGATCCTCGCAAATCTGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCaa                                  <  8:1817972/151‑1 (MQ=11)
                                                                                                                      cTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGACACAATAGACCGAGCAAAAGCACGAAAGCTGTAACAGCAACAGGCTAATGCCGAGAAAGAAAAACAGGTAGATCCGCGCaa                                  >  4:1631174/1‑149 (MQ=14)
                                                                                                                          aaCAGCAACAGGCTAATG‑CCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCGCACGCCAGCAAACCCGACCAGCACCAGGATCAACCCGAGCAAGAACACAAGGTACCTCCTCGCaaatcagc                            >  8:383444/1‑146 (MQ=2)
                                                                                                                            cAGCAACATGCTATTG‑CTTAACAATAAGATAATCTCTTTCCGTGCAATTCCGTCTTCGTATCTGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGccgccg                          <  4:548488/151‑1 (MQ=2)
                                                                                                                                aaCAGGCTAATG‑CGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAACAAGGAACAGCAACATGATAATAAAGAGACAAACCAAAAGGTAGAAACTCGCACAGccgccgacc                       >  7:80512/1‑147 (MQ=2)
                                                                                                                                      cacacg‑CGGACGCAGCAGAACATGCCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc                <  3:1138748/146‑1 (MQ=11)
                                                                                                                                       tAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTGCCAGAAGAACCCGGGGATGCGCGCACGGCTGCCGTCGAGGCCGcg               >  3:616752/1‑150 (MQ=11)
                                                                                                                                        aaTG‑CGTATCTAGAAGCAGAGGGCGGCCGGCGCAATCCCGCCGTCGAAGCGGCTATGCGCCGAGCCATCTGCCGCAATCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTa              <  1:1154959/151‑1 (MQ=2)
                                                                                                                                        aaTG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTGGACGCGGCTATTGCCCGAGCGAAGGCCAGCAACCGCGAACAGCACCAGGCTGATCCCGAGCCCGAACAGCAGGCGGATCCGCGCAACTCTGCAGTCGACGCCGCt               >  1:1105714/1‑150 (MQ=9)
                                                                                                                                        aaTG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACCGGCTAATGCCTCCGCGGAACACCAGGCCGCTCCGCGCAAGTCAGCCGTCGAAGCCGcgt              >  6:415272/1‑149 (MQ=14)
                                                                                                                                         aatggggaacttttagaaCTGGTCGTTCCTCGCAATTCAGCTTTAGTAGCCGCTATTGGCTTTGCCAAATCTAGGATGTTGGAAGAGCAACAGGCTAATGCGGATCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa              <  4:679519/137‑1 (MQ=2)
                                                                                                                                          tG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAGCACGCCACAGCACAACACGGAGCTCCCCGCAACGCTCACGTCGAcgccgcactt            >  8:267516/1‑147 (MQ=2)
                                                                                                                                          attatgAAGCAGAACAAGTGGTCGATCCTCGTAAATCAGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAt             <  2:278805/146‑1 (MQ=11)
                                                                                                                                                  ccAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCAAAAGAACTCAAAATAGAAAAGAAAAAGGCTAATGCGGAGCCAGAAGAACAGCTAGATCCGCGCAAAGCAGCAGTAGAAGAAGCTATTGCCCgcg     >  7:468234/1‑149 (MQ=2)
                                                                                                                                                    agaagaACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCGGCTATTGCCCGAGCCAAATCGCAAAAGCGTCCACTGCACCATGATAATGCGGATAAAGAAAAAAAGGTGGATACGCCCAAAGCTGAAAACGAAGCGGCTATTGCCCgcggc   >  2:1700451/1‑147 (MQ=2)
                                                                                                                                                     gaagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAATCCGCTATTGCCCGTGCCAAACCCCCCAAGCTGGACCAGCTACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCCGTCGGAGCCGCtctggcgcgcgcac  >  8:660065/1‑138 (MQ=14)
                                                                                                                                                        |                                                                                                                                                   
GCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATG‑CGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCA  >  NC_000913/1708608‑1708905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑