Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,269,9940GT28.8% 191.3 / 24.3 176intergenic (+392/+631)yhaC/garKpentapetide repeats‑related protein/glycerate kinase I
Reads supporting (aligned to +/- strand):  ref base G (36/75);  new base T (0/45);  total (37/139)
Fisher's exact test for biased strand distribution p-value = 1.10e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 180 total aligned reads displayed.

GAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGT  >  NC_000913/3269845‑3270138
                                                                                                                                                     |                                                                                                                                                 
gAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTg                                                                                                                                                   <  3:1485432/150‑1 (MQ=255)
gAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGGCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTg                                                                                                                                                   <  8:338628/150‑1 (MQ=255)
 aaaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGa                                                                                                                                                  <  2:1343534/150‑1 (MQ=255)
  aaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGa‑aa                                                                                                                                               <  2:333036/151‑1 (MQ=255)
  aaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGa‑aa                                                                                                                                               <  7:68516/151‑1 (MQ=255)
   aCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCCCTTTCTTTTGGGTATAGTGTCGTGGACAATCATTAATATTTCAGCACCTACAAAACAAAAAAAAAAACAAAAACGGTTTTTACGTAAAACAGGTGA‑AAc                                                                                                                                              >  4:1491589/1‑151 (MQ=17)
   aCCCGCCGGAACGGTTTATTACGTAAATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGA‑AAc                                                                                                                                              <  7:1553641/151‑1 (MQ=255)
     ccgccgGACCGGTTTTTTATTTTTATCATGTCTAACTGACCGTTAAGCCTCTTTATTTTGTGGATTGTGTCGTTGACAGTCGTTCATCTTTGTTCCCCTCCAAAATCTTAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGA‑AACTg                                                                                                                                            <  7:427956/151‑1 (MQ=2)
     ccgccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTg                                                                                                                                            <  6:1503686/151‑1 (MQ=255)
        ccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGACGCTTTCTATTGGTTATAGTGTAGTGGAAAGTCATTAATCTTTATGACCCTCCAAAAGAAAAAAAAAAAAAAAACGGGTTTTTACGTAAACCAGGTGA‑AACTGAcc                                                                                                                                         >  5:21049/1‑151 (MQ=14)
          ggAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGa                                                                                                                                       <  1:250295/151‑1 (MQ=255)
           gAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGAGAGTCATTGATCTTTATGCCCCGCCAAAAAAAAAAAACCGCCGAAGCGGGTTTTTTAGTAAAAAAGGTGA‑AAATGaagga                                                                                                                                       >  4:654917/1‑146 (MQ=14)
           caccGGTTTATTACGTACATCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCCTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGA‑AACTGACCGAt                                                                                                                                      <  6:21127/148‑1 (MQ=255)
             acgtgttattaCGTACATCAGGTCAAACTGACCGATAATCCTCTTTCTTTTGGGTATAGTTTCGTGTAAATTCATTCATCTTTATGCCTCTCCAAAAGGAAAAACCCGTCGAATCGGTTTTTTACGTAAACCAGGTGA‑AACTGACCGATaa                                                                                                                                    <  2:1334658/146‑1 (MQ=11)
             aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATaa                                                                                                                                    <  6:1825171/151‑1 (MQ=255)
              cGGGTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGA‑AACTGACCGATAAg                                                                                                                                   <  6:522077/151‑1 (MQ=9)
               ggTTTATTACTTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGc                                                                                                                                  <  8:899447/151‑1 (MQ=255)
               ggTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGc                                                                                                                                  <  8:1216369/151‑1 (MQ=255)
                gTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTAATCTTTCTGCCCCACCAAAAGAAAAAAACCGCCCAACCGGCTTTTTAAGTAAAACAGGTaa‑aaaggaagagaatagt                                                                                                                                 >  4:1044912/1‑137 (MQ=14)
                 tttATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACATCTGa‑agatcgacgtgtaggg                                                                                                                                 >  5:1398458/1‑135 (MQ=14)
                   tattaAGTACATCACGTTATACTTACCGTTAAGGCGCTTTCTTTTGTGTCGTGTGTCGTGGACAGTGATTCATCTTTCTGCCACTCCAAAATGATAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGc                                                                                                                               <  5:1620559/150‑1 (MQ=11)
                      ttcttacataatttAAAAATTACCGATAATACGCTTTCTTTAGTTTATAGTGTCGTGGAAAGTCATTCATATTTATGCCACTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGcttt                                                                                                                            <  7:901156/137‑1 (MQ=11)
                       acttACATCATTTTAAAATGAGCGATAATCAGCTTTCTTTTTGTTATTGTGTCGTCGAAAGTGTTTCTTATTTCTGCCACTCCAAAAGTAAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTTA‑AACTGACCGATAAGCCGctttc                                                                                                                           <  4:558515/147‑1 (MQ=2)
                       aCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTGATCTTTATGCCCCTCCAAAAGAAAAAAACCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGCCCCATacggaccttgcc                                                                                                                          >  1:1396778/1‑140 (MQ=14)
                       aCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGctttct                                                                                                                          <  5:867601/151‑1 (MQ=40)
                       aCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGctttc                                                                                                                           <  6:1170861/150‑1 (MQ=40)
                        cGTAGATCATTTAATACTGACCGATAAGGCGGAGTCTTTTGGTTATAGTCTCGTGGACAGTCTTTCATCTTTCTGCCACTCCAAAAGTATAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGctttctt                                                                                                                         <  7:908937/151‑1 (MQ=11)
                          tACATCAGGTAAAACTGACCGATAAGCCCCTTACATTTTCGTATAGTGTCGTGGAGAATCAATAATAGTTATTCCCCTACAAAACAAAAAAAAAACAAAAAAAGGTTTTTACCTTAATCAGGTGT‑AACTGTCCCATAAggtcggaagggcg                                                                                                                       >  5:883760/1‑139 (MQ=255)
                           tacaccagTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCtttt                                                                                                                       <  1:705153/143‑1 (MQ=255)
                           aCATCAGTTAATACTGTGCGTTAAGGCGCTTGCTTGAGGTTATAGTGTCGTGGAAAGTCATTCATCTTTCTGCCACTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGA‑AACTGACCGATAAGCCGCTTTCtttt                                                                                                                       <  7:178731/150‑1 (MQ=11)
                            catcatGTAAAACTGACCGATCATGCGCTGTCTTTTTGGTATAGTGTCGTGGAATGGCAATCTTCTTACTGCCCCTCCAAAAGTAAAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTgg                                                                                                                     <  2:625366/151‑1 (MQ=14)
                                 ggTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGtata                                                                                                                <  8:1398188/151‑1 (MQ=35)
                                    aataatgagctatatGCGGCTTTCTTTTGCGTATTGTGTCGTGGATTGTCATTGTTCTTTCTGCCCCTCCAAAATTATAATCCCGCCGTAGCGGTTTTTTACGTAAATCAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt                                                                                                              <  5:1778946/139‑1 (MQ=11)
                                    aaaaCTGACCGATAATCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt                                                                                                              <  5:401796/150‑1 (MQ=255)
                                      aaCTTACCGATAAGCCGCTTTCATTAGGGGCTCGTCTCGGCGACAGTCATTCATCTTTCTGCCACTCCAAAAGTACAAACCCGCCGAAGCGGTTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTc                                                                                                           <  6:1119587/151‑1 (MQ=11)
                                      aaCTGACCGAGAAGCCGCTTTCTTTTGGGTATAGTCTCGGGGACAGTCATTCATCTATCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTc                                                                                                           <  1:783774/151‑1 (MQ=255)
                                       actgtgcgatattctgCTTTCTTTTTTTTATTGTCTCGTCGAAAGTGTTTCTTCTATCTGGCACTCCAAAATTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTc                                                                                                           <  4:591377/135‑1 (MQ=2)
                                        cTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGGTTTTAAAGAAAACACGTGAGAACT‑ACCGAAAACCCGCATTATTTTggtttgagtctgat                                                                                                         >  3:825547/1‑139 (MQ=11)
                                        atGACCGATAAGCCGCTTTCTTTTGGGTATAGTCTCGTGGACTGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGTAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGt                                                                                                         <  3:443967/150‑1 (MQ=255)
                                          gagctaTAAGCCGCTTTCTTTTGGGTTTCGTGTCGTTGTCTGTGATTGATCTTTCTGCACCTCCAAAATTAAAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGA‑AAATGACCGATAAGCCGCTTTCTTTTGGGTATAGTgtggtg                                                                                                        <  4:530508/145‑1 (MQ=11)
                                          gACCGATAAGCGGTTGTCTTTTGTGTATTGTGTCGTGGACAGTCTTTCTTATTTCTCCCACTCCAAAAGTAAAAACCCGCCGTAGCGGTTTTTTACGTAAAACAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTg                                                                                                        <  2:771391/150‑1 (MQ=11)
                                             cgatatttcgttttctttTTATTTTAGTGTCGTGGAATGTGTTTCTTATTTATGGCACTCAAAAATTATAAACCCGCCGTAGCGGGTTTTTACGTAAAACAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACa                                                                                                    <  4:306043/140‑1 (MQ=2)
                                                tAAGCCGCTTTCTTTTGGGTATAGAGTCGTATACAAAGATAGAAGTTTATGGAAATACAAAAGTAAAAACACGACAAATCGGGTTTTTACGTAAAAAAAATAA‑AAAAGAACGATAAGCCGCTTTGTTTTGGGTATAggggggggggggggg                                                                                                 >  7:1429218/1‑137 (MQ=2)
                                                  ggcagCTGTCTTTTGGGTATAGTGTCGGGGACAGTCTTTCTACTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtcat                                                                                               <  1:1019193/147‑1 (MQ=11)
                                                     cGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTGATCTTTCTGCCCCACCAAAACTAAAAAACCGCCGCCGCGGGGTTTTACGTAAAACACGTGG‑AACAGCCCGATAAGCCCCGTTCGGTGGGGGATAGTGTCggctgcactccgggc                                                                                            >  8:1733298/1‑137 (MQ=2)
                                                        tttctttattctttcgtgtCGTGGAATGTGTTTCTTATTTATGCCACTCAAAAATTATAAACCCGCCGTATCGGTTTTTTACGTAAAACAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATc                                                                                          <  2:1529013/135‑1 (MQ=2)
                                                          tctcttccgtactgtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAATTAAAAACACTCCGAAGCGTGTTTTTACTTAAATCATGTGA‑AACTGACATATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCtt                                                                                        <  4:128000/137‑1 (MQ=11)
                                                            acgcgcttcccctgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAATCCCGCCTAAGCGGGTTTTTAAGTAAAACAGTTTA‑AACTGACCGATAAGCCTCTTTGTTTTGGTTATATTGTCGTGGACAGTCATTCATCTTTCt                                                                                     <  4:493915/139‑1 (MQ=11)
                                                             ttttctttttttgtCGTCGACAGTGTTTTTTCTTTATCGCACTCCAAAAGTATAAACCCGCCGTATCGGTTTTTTACGTAAATCAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCttt                                                                                       <  5:1003307/137‑1 (MQ=11)
                                                             tttGGGTATAGTGTCGGGGACAGTCATTCATCTATCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCt                                                                                     <  8:409929/150‑1 (MQ=25)
                                                                ttgTATAGTGTCGGCGACAGTCATTGATCTATCTGCCACTCAAAAAGTACAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGcc                                                                                  <  8:191772/148‑1 (MQ=11)
                                                                       gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAACTAAAAACCCGCCGAAGCGGGTTTTTAAGTAAAAAAGGTGA‑AACTGACCGATAATCAGCTTTCTTTTGGGTATAGTGTCGTGGGCCGTCCTGGATCtttgttgggctgcccc                                                                          >  8:128007/1‑138 (MQ=11)
                                                                           cGTGGACAGTCATTCAGCTATCTGCCCCTCCAAAATTTATTAAAAGCATAAGCGGTTTTTTACGTAAAACAGTTTA‑CACTCAACTATAACCCTATATCATTTTCTTATTTTCTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAg                                                                        <  4:1617941/149‑1 (MQ=2)
                                                                            tttgagactccttcatCTTGCATCCGCTCCAAAAGTACTTGCCGGGCGTAGCGGGTTTTTAGGTAAACCAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCa                                                                      <  6:1617208/139‑1 (MQ=11)
                                                                             gggaatgTCTTTTATATTTCTGGCACTCCAAAATTTAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCaaa                                                                    <  1:124101/145‑1 (MQ=11)
                                                                                catgggtattctatatCTGGCCCTCAACAATTTTAAACCCGCCGTATCGGGTTATTACGTACATCAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAc                                                                 <  5:172572/136‑1 (MQ=11)
                                                                                   gactctgctatttATGCCACTCAAAAATTAGAAACCCGCCGCATCGGTTTTTTACGTAAATCAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccg                                                              <  3:1581496/141‑1 (MQ=11)
                                                                                     gtttgatCTATATGCCCCTCAAAAATCAAAAACCCGCCGAATCGGTTTTTTACGTAAAACAGGTAA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgc                                                             <  8:1034130/145‑1 (MQ=11)
                                                                                        tcaaCTATCTCCCACTCCAAAAGCACAAACCCGCCGAATCGGTTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGa                                                          <  1:1818328/150‑1 (MQ=11)
                                                                                            cTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTATATCCGGTGA‑TACTGCGAGTTAAGGCGAGTTCTGTTGGGTTTTGTGTGGTGGCGAGTTCTTCATGATTAATACCCTCCTAAAGCaaactccggggggcgggg                                                     >  1:552205/1‑136 (MQ=2)
                                                                                            atttatcccacTCAAAAACCAAAAACCCGCCGTATCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGGCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCg                                                      <  4:1509794/140‑1 (MQ=11)
                                                                                            atttCTGCCACTCCACAATCTAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgg                                                     <  6:1268032/150‑1 (MQ=255)
                                                                                               acgggcccTCCACAATCAAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtt                                                  <  1:132260/146‑1 (MQ=11)
                                                                                                 tGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑GGCTGAGCGATAGGCGGCTGTCGTTTGGGGAGTGAGTCGTGGGGAGGGCTTCATCTGTGTGCAACTCCAAAAGCCTAATCccgccgggggggggtgt                                                >  6:843206/1‑140 (MQ=2)
                                                                                                  gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCGTGGACAGTCATTCATCTTTATAGCAATACAAAAGAAAAAACACAACGAATAGGCttttt                                               >  5:1831244/1‑151 (MQ=11)
                                                                                                  gCCCCTCAAAAATTACAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTCA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt                                               <  1:1624502/151‑1 (MQ=255)
                                                                                                  cgcacTCCACAAGTTTAAACCCGCCGTATCGGTTTTTTACGTAAAACAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt                                               <  2:924683/147‑1 (MQ=11)
                                                                                                    ccctcaacaatctcaaaCCCGCCGAATCGGGTTTTTACGTAAATCAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGAGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc                                             <  2:1098960/137‑1 (MQ=11)
                                                                                                     ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACAGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTGATTAAAATTTATGGCCCACCAAAATCAAAAAACACCCGAAGCGGGGTTTTACg                                            >  5:1421765/1‑151 (MQ=11)
                                                                                                        ccAAAAGCACAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGt                                           <  8:783065/149‑1 (MQ=9)
                                                                                                        ccAAAAGAATAAACCCGCCGTACCGGGTTTTTACGTAAAACAGGTTA‑AACTGACCGATATGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGt                                           <  5:1677480/149‑1 (MQ=11)
                                                                                                          acaaggacaaaCCCGCCGCACCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAc                                       <  1:760641/143‑1 (MQ=255)
                                                                                                          aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAGAACAGGTGC‑ACCTGACCGATACGCGCCTGTCTGTTGGGTAGAGAGGCGTGGAGAGGGGTTGAACTTTCTGGCCGGGCAGAAGCAAAAACCCGCCGGCGCGGGGGTTTaggggcgg                                       >  3:621005/1‑144 (MQ=2)
                                                                                                          aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑GACTGACCGATAAGCCGCGTTCTTTTGGGTATAGTGTCGTGGGCGGGCGTTGAGGGTTGTGCCCCTCCAAAAGCAAAAACCCGCCGCCGGGGGgtttttggtcacg                                       >  6:810497/1‑143 (MQ=11)
                                                                                                           aaatcacaaaCCCGCCGCACCGGGTTATTACGTACAACAGGTCA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAcc                                      <  6:798486/144‑1 (MQ=11)
                                                                                                           aaaGTATAAACCCGCCGAATCGGTTTTTTACGTAAAACAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAcc                                      <  4:1443300/151‑1 (MQ=255)
                                                                                                           aaaGCACAAACCCGCCGCAACGGGTTATTACGTAAAACAGGTCA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAcc                                      <  6:1652001/151‑1 (MQ=11)
                                                                                                           aaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACATTTTA‑AACTGACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCGTGTACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTaaatc                                      <  5:812846/151‑3 (MQ=11)
                                                                                                              ggacaaaCCCGCCGCAGCGGGTTTTTACGTAAAACAGGTCA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg                                   <  1:825708/147‑1 (MQ=255)
                                                                                                                ttaaaCCCGCCGAATCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGt                                  <  2:193403/148‑1 (MQ=25)
                                                                                                                aaaaaCCCGCCGCACCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGt                                  <  6:1680176/150‑1 (MQ=25)
                                                                                                                 taaaCCCGCCGGATCGGGTTTTTACGTATAACATGTTA‑AAATGACCGATAATCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg                                    <  4:1680232/146‑1 (MQ=11)
                                                                                                                 aaaaCCCGCCGCAGCGGTTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGa                                <  6:729265/151‑1 (MQ=25)
                                                                                                                   aaCCCGCCGCACCGGGTTATTACGTAAATCAGGTAA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaaa                              <  1:1151991/151‑1 (MQ=255)
                                                                                                                    atactcttaaGCGTTTTTTTATTTAATACAGGTGT‑ATCTTACGTTTTAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaaa                              <  4:268979/142‑1 (MQ=11)
                                                                                                                      ccgccgCAACGGGTTATTACGTAAATCAGGTCA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTg                           <  4:432806/151‑1 (MQ=255)
                                                                                                                       cgaggtatcGGTTTTTTACGTAAATCAGGTGA‑AACTGACCGATAAGCCGCTTTGTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAATCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa                          <  4:22761/143‑1 (MQ=11)
                                                                                                                         tcgtatctgttttttACGTAAATCAGGTTA‑AACTGACCGATAAGTCTCTTTCTTTTGTGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCTGGTTTTTACGTAAACCAGGTGAAACTGAc                         <  7:116960/140‑1 (MQ=11)
                                                                                                                         cctcaGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa                          <  8:654390/145‑1 (MQ=25)
                                                                                                                         ccgtatctgttttttACGTAAATCAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGTTATAGTGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc                        <  2:1753553/141‑1 (MQ=11)
                                                                                                                         ccgcatcgtgTTTTTACGTAAAACAGGTCA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc                        <  6:832313/142‑1 (MQ=255)
                                                                                                                         ccgatgttggTATTTACGTAAATCAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc                        <  2:1402389/143‑1 (MQ=11)
                                                                                                                          cgAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGTCGAGTCCATCATAAGTACGCGCCATCAAAAACAATAACCCGCAGCAGAGGGGTTTTACGTAAAGCacaggtcagagcccc                       >  3:245537/1‑137 (MQ=2)
                                                                                                                            tatagtttttttACGTAAATCAGGTTA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACTGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGa                      <  7:1290157/143‑1 (MQ=11)
                                                                                                                            aaGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGGCAGTGATTCATGTTTTTGCCCCGCCAAAACCAAAAAACCCCCGCAGCCGGTGTTTTAGTAAAGCACGGGaaaattcaccat                     >  8:1627725/1‑142 (MQ=11)
                                                                                                                             accGGGTTATTACGTAAATCAGGTTA‑AACTGACCGATTATCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCTTATTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATa                    <  7:131158/149‑1 (MQ=11)
                                                                                                                               cgtgTTTTTACGTAAAACAGGTGA‑AAGTGCCCTATCCCCCGCTTTCTTTTGGGTTTACTCTCTTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg                  <  8:1522130/148‑1 (MQ=11)
                                                                                                                               cGGTTTTTTACGTAAAACAGGTTA‑AACTGACCGATAAGCCGCTTGCTTTGGGGTATTGTGTCGTGGACTGTGATTCATCTTTCTGCCCCTCAAAAAGCACAAACCCGCCGCAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg                  <  1:382410/151‑1 (MQ=11)
                                                                                                                                gggTTTTTACGTAAAACAGGTGA‑AACTGACCTATAAACCGCTTTCTTTTGGGTATAGTTTATTGGAAAATAATTCATCTATCTGGACCACCAAAAAAAAAAAAAAACCGAAGCGGGTTTTTACGTAAAGCAGGTGAAACTGAGCGaggagc                 >  4:177234/1‑146 (MQ=2)
                                                                                                                                        aCGTAAAACATGTCA‑AACTGACCGATAATCATTTTTTTTTTGTTTATAGTTTCTTGGACATTTAATCATTTTTCTTCACTTTTAAAATCAAATACGCTCTTAAGATGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGctttc          <  4:1190911/150‑1 (MQ=2)
                                                                                                                                                     |                                                                                                                                                 
GAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGA‑AACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGT  >  NC_000913/3269845‑3270138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑