Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,708,8050TA27.6% 102.6 / 39.0 159R629R (CGT→CGA) rsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base T (49/35);  new base A (29/3);  total (100/59)
Fisher's exact test for biased strand distribution p-value = 7.68e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 162 total aligned reads displayed.

ACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAAC  >  NC_000913/1708655‑1708953
                                                                                                                                                       |                                                                                                                                                     
cgcAGAACCACAGGCCGATCCTCGCAAATCCGCCGTCGAAGCCGCTATTGCCCGGGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt                                                                                                                                                       <  4:394084/149‑1 (MQ=14)
      accactggacGATCCGCGCAAAGCCGCCGTGGAAGCCGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCaaa                                                                                                                                                 <  8:736827/142‑1 (MQ=11)
      acaacaGGGCGATCCGCGAAAACCAGCCGTGGAAGCAGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCaaa                                                                                                                                                 <  6:886626/151‑1 (MQ=14)
         cgcgggcGATCCTCGAAAAGCTGCCGTTGAAGCAGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGGCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCa                                                                                                                                              <  8:1032928/145‑1 (MQ=11)
          caGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGCCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCgcgcgcaggccc                                                                                                                                             >  6:937604/1‑143 (MQ=14)
            gggcGATCCCCGAAAACCAGCCGTCGAAGCAGATATTTCCCGTGCAA‑TAGGGTGTAAGGTGGTAGAGCAACAGGATAATTAGGAACCAGAACAACAGGTCGATCCTCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGc                                                                                                                                           <  7:1377659/148‑1 (MQ=2)
            ggatgATCCTCGAAAAGAAGCAGTAGCAGCCGCGATTGCCCGGGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGc                                                                                                                                           <  6:1684726/147‑1 (MQ=11)
             gttgATCCGCGGAAACCTGCGCTCTAAGAAGCTATTGCCCGGGCCA‑AACCGCGCAAGCTGGAACACCAACAGGCTAATGCGGAACCAGAACAACAGGGCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCa                                                                                                                                          <  6:1469759/148‑1 (MQ=11)
              ccGATCCCCTCAAACCTGCGTTCGACGCAGCGATTTACCGGGCCT‑CAGCGCGCAATCTGGAACATCATCAGGCTACTTCGGAACCAGAATAACAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCaa                                                                                                                                         <  5:1012399/150‑1 (MQ=2)
                gATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAGAAGATCGAACAGATCACAAACACGGTAGAAACCGCTATTGCACGAGCGAAAGCCCGCaac                                                                                                                                        >  3:950835/1‑149 (MQ=2)
                 atgctcgtaaaGCCGCCGTCGAAGCAGCTATTGCCCGGGCCA‑AAGCGCGCAAGAGGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTGGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCt                                                                                                                                      <  2:611121/143‑1 (MQ=11)
                  tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCA‑AAGCCAGCAAGCTGGAACAGCAACAGGCTAATGAGGACCCAGAAGAACAGGTTGATCCGCGCAAAGCAGCCGTAGAAGCGGCTATTGCCCGAGCAAACGccaacaacccc                                                                                                                                     >  5:863601/1‑141 (MQ=11)
                     gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAGGCCGGCGTCGAAGCCGCGAGTCCGCGAGGCACCGCACGCAAGCTCGa                                                                                                                                   >  4:8911/1‑150 (MQ=11)
                           aGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTAGATCCGCGCAAAGCGGCCGTAGACGCGGCTATTGCCCGCGCGAAAGCGCCCTAGCTggcggcgca                                                                                                                             >  2:247834/1‑143 (MQ=1)
                            cccgccgTCGAAGCCGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAAc                                                                                                                           <  8:105523/150‑1 (MQ=255)
                             ccgccgTCGAAGCCGCTATTGCCCGTGCGA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACa                                                                                                                          <  1:309504/151‑1 (MQ=255)
                              cgccgTCGAAGCCGCTATTGCACTTTAAA‑AAGCGCTACAGCTGCAACCCCAACAGTCTAATGCCGACCCATAACCACCGGTCCATCCGCGAAATCCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAg                                                                                                                         <  4:531540/151‑1 (MQ=9)
                               gccgTCGAAGCCGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGGTAATGAGGAGCCAGCCGAAGAGGTCGATCCGCGCCAAGCGGCCGGCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCGGGCACCGcccccgg                                                                                                                        >  8:683932/1‑145 (MQ=11)
                                ccgTCGAAGCCGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAGAGCGGAACCAGAACAACACGGAGATCCCCGCAAAGCAGCCGTCGAAGCATCGATTGCACGGGGCCAAGCACGCAAGCGGGACCCGCacccggg                                                                                                                       >  6:349809/1‑145 (MQ=2)
                                ccgTCGAAGCCGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGGAAGCTGGAACAGCAACAGGc                                                                                                                       >  3:761380/1‑151 (MQ=255)
                                 cggcGACGCCGCTATTGCCCGTTCAA‑ATGCTCGCAAGCGCCAACAGAAACAGGCTAATGCGCACCCAGATGCACACCTCGATCCTCGTAACGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt                                                                                                                      <  1:349870/148‑1 (MQ=2)
                                 cgTGGAAGCAGCTCTTGCCCTCTCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTACTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt                                                                                                                      <  6:282713/151‑1 (MQ=11)
                                  gTCGAAGCCGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTCGAACAGCAACAGGCTAAAGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCACGAGCAAAAGCACACAAACACGAACAGCacaagcat                                                                                                                      >  3:1638875/1‑143 (MQ=11)
                                    ggAAGCCGCTAGAGCCGGGGCCA‑ACGCGGGGAAGCTGGAACAGCAACAGGCTACTGCGGAACCAGAACCACAGGGCGATCCTCGCAAAGCCGCCGTGGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt                                                                                                                   <  6:1262414/150‑1 (MQ=11)
                                     cacgaagCTATTGACCG‑GCCACAATCGCGCAAGCTGGAACACCAACAGGATACTCCGGAACCAGAACACGATGGCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg                                                                                                                  <  6:1750423/145‑1 (MQ=11)
                                      aaGCCGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGAGATAAGAAGAGCGAGGTCCTCGCAAAGACTCGTTCGAACCCGCTATTGCCCGTGCGAACGCGCGCAAAATGAAACAACAACAGGCTaaggg                                                                                                                 >  3:260294/1‑148 (MQ=2)
                                       aGCCGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGGGGCACGAGAAGAACAGGTCGCTCCGCGCAACGCCGCCTTCGAAGCCGCGAGTGCACGGGCGGAAGCACGCAAGCTGGCCCAGCCCCAGGCTacgggg                                                                                                                >  8:1670772/1‑146 (MQ=14)
                                         cagaattggCCGGTGCCT‑ATGGGGGCAAGCTGGAACACCAACAGGCAAATGCGGAACCAGAAAACGAGGGCGATCCCCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa                                                                                                              <  6:278340/143‑1 (MQ=11)
                                         cagCTATTGCCCGGGCCA‑AAGCGCGCAAGCTGGAACACCAACAGGCTAATGCGGACCCAGAAGAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa                                                                                                              <  2:1563016/149‑1 (MQ=11)
                                          agcgaTTGCCCCGGCCA‑AAGCCCGCAAGCTGGAACAGCAACAGGCTACTGCGGAACCAGCACCACATGCCGATCCCCGCAAAGCCGCCGTGGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg                                                                                                             <  4:1936795/147‑1 (MQ=11)
                                           gctatttacggggCCA‑AAGCTCGCAAGCTGGAACAGCAACAGGCTAATTAGGAAGCAGAACAACAGGTCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGc                                                                                                            <  7:1612022/139‑1 (MQ=11)
                                             gcggcccccTGCCC‑GAGAGCGCAAGCCCGAAGAGCCACCGTCCCATCCCGAACCAGAACACCATGGCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCa                                                                                                          <  8:147618/146‑1 (MQ=2)
                                                ttcacgggacA‑AACCGCGCAATCAGGAAGAGCATCAGGATAATGAGGAAGCAGAAAACCAGGGTGATCCGCGTAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGa                                                                                                        <  3:268689/141‑1 (MQ=11)
                                                  ccctttccA‑AAGCGCGCAAGCTGCAACAGCAACAGCCTAATCCGGAACCAGAATAACAGTTCTATCCGCGCAAAGGCTCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca                                                                                                     <  3:1373897/145‑1 (MQ=11)
                                                     gTGCCA‑AAGGGCGCAAGCTGGAACAGCATCAGGCTAATCCTGAACCAGAACAACAGGTCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAacaaca                                                                                                  <  8:1715941/151‑1 (MQ=11)
                                                       gCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGAGGAGCAAGAAAAACAGTAGTATACGCGAAAAGAGGACGTCGAAGAGGCTATTGCCCGTGCCAAAGCAAGAAAAATAAAACAGCAACAGGCTAATGCGGAGcgcggacgagcgg                                                                                                >  1:1475734/1‑139 (MQ=2)
                                                         cA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGACGCGGCTATTGCCCGCGCACAAGCCAACAAACCCGCCCAGCACAAGGGTAAAACCGAGCAAGAAAACCAG‑Gt                                                                                              >  7:1486046/1‑150 (MQ=17)
                                                          gaaagatctgaaGCTGGAACAGCAACAGGAAACTCAGGAAGCAGAACAAGATGGCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTc                                                                                             <  2:76162/141‑1 (MQ=11)
                                                          atccactcggaaccTGGAACAGCATCAGCATACTTACGAAGCAGAATAAGTGGCCGATCCTCGTAAACCCGCCGTTGAAGCAGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTc                                                                                             <  1:1494557/138‑1 (MQ=2)
                                                          a‑aaGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCTGCCGTCGGATCGGATAATGCACGTGGAAAGGAACGCAATGTGGAACCGGAACAGGCTAATGCGGAGCCAGAAGAACAG‑Gta                                                                                             >  3:731362/1‑149 (MQ=11)
                                                                 cgcAAGCTGGAACATCATCAGGATAATGCGGAACCAGAACAACTTGGAGATCCGCGCAAAGCCGCCGTGGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCcgc                                                                                      <  8:1506227/151‑1 (MQ=11)
                                                                   cAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTCCCCGAGCCCAAGCCGGCACCCGTGAACAGCACCCCGCTAATGGCGAGCGAGCACATCAG‑GTCGATCCgcgc                                                                                    >  2:336081/1‑151 (MQ=11)
                                                                     aGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTTGAACAGCACCAGGCTAATGCGCAGCCAGCACACCAG‑CTCGATCCGCGCa                                                                                   >  8:1058514/1‑150 (MQ=11)
                                                                      acTGGAACACCAACAGGATACTTCGGAACCAGAACAAGATGGGGATCCGCGCAAATCAGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCaaa                                                                                 <  4:1608586/150‑1 (MQ=11)
                                                                        tGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCACGAGCCAAAGATCGCAAGAGCGTACAGCACCCAAATAATGATGAGCGACGAGAACAG‑GTCGCTCCGCGCcaat                                                                                >  3:1137938/1‑149 (MQ=2)
                                                                         ggcaCAGCTACAGGATACTTCCGAACCAGAAAAACTTGGCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCaa                                                                                  <  4:1909181/144‑1 (MQ=11)
                                                                         ggAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGAGCAAAAGCAAACAAACAGGAACAGCAGCAGGATAATACCGAGGAAGAAAAACAC‑GTCCATcgacgaaactcc                                                                              >  5:1550976/1‑140 (MQ=9)
                                                                           aaCAGCATCAGGATAATCCGGACGCAGAACAACATGGCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAgccgc                                                                            <  4:612234/151‑1 (MQ=11)
                                                                            aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGACGCGGCTATTGCCCGCGCGCACGCCAACAACCGAAAACAGGCAAAGGCTAAAACAGTGAGAGAAGCACAG‑GTGGATCCGCGCAAAgccgc                                                                            >  5:1693690/1‑150 (MQ=2)
                                                                             cAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAGCGGCCGTAGAAGCGGCTATTGCCCGCGCGCAGGCCAGCAACCCCGCCCAGCACCAGGCTGAAGACGAGCCCGAACAGCTA‑GTCGCTCAGCGCaactccgg                                                                            >  1:29204/1‑143 (MQ=2)
                                                                               ccAACAGGCTAATGCGGAACCAGAAAACCTGGGCGATCCACGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTc                                                                        <  2:16781/150‑1 (MQ=255)
                                                                               ccAACAGGCAAACGCGGATCCACACCATCAGGCCCAACCCGCCTAACCCGCCCTCTAAGCAGCTATTGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTc                                                                        <  3:682461/150‑1 (MQ=2)
                                                                                  aCAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAACCTGGAACAGCAACAGGCTAATAACGAGAGAGAAACCGAG‑AGGGATACACGCAAAACCGCCGTCGa                                                                      >  5:1893072/1‑150 (MQ=11)
                                                                                       cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCGGGAACAGAACCAAACAGCGTCCTCGACAGAAACACAG‑GTCCATCCCCGCAAAGACGCCGTCGAAGCCGc                                                                >  3:566333/1‑151 (MQ=14)
                                                                                       cTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGAGCAAAAGCACACAACCTCAAACAGAACAAGACTAATACCGTGAAAAAAGAACAG‑GTAGAAACGCGCAAAgccgcattataaaaat                                                                 >  1:677198/1‑139 (MQ=255)
                                                                                         aaTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTGGAAGCGGCTATTGCCCGCGCGCAAGCCACCAACCCCGCCCAGCACCAGGGTCTTGACGAGCCAGAACTGCTC‑GTCTCTCAGCGCACAgccgcttatcccgcgccc                                                               >  6:1662917/1‑137 (MQ=2)
                                                                                            tcgtaccctgattcaCAGGTCGATCCGCTAAACTGCTCCGTCGAACCCGGTATTGCCCGTTCCAAAGATCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAtt                                                            <  3:703324/136‑1 (MQ=11)
                                                                                                    agcaccccAGGCCGATCCCCGTAAATCTTCCGTGGAAGCCGCTATAGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGcc                                                   <  8:879697/144‑1 (MQ=11)
                                                                                                    agaagaACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGGGCGAACGCCAGCAAGCTGGACCAGCACCAGGCTCTTGCCGAGCCAGAACCACAC‑GTGGAGCCGCGCACAGCCGGCGACGAAGCGGCTATTGCCGGAGcg                                                   >  2:979079/1‑150 (MQ=9)
                                                                                                     gaagaaCAGGTCGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGAGCGAAAGCAAGAAAGCAGGCACAGCAGAAGGATAATGCCGAGCCATAACACCAA‑GTGCAACCGAGCAAATCGGCAGTGGAAGCCGCTATAGCACgcgcg                                                   >  3:1893275/1‑149 (MQ=9)
                                                                                                     gaagaaCAGGTCGATCCGCGCAAAGCGGACGTCGAAACCGCTAATGCAAGTGAAAAAGAAATCAAACACGAACAGCAAAAGGCTAATGCCGTAACAGAAAAAAAA‑GTAGATCCGCGCAAAGCGGCGGTCGGAGgcgcgtgggggcggggcc                                                  >  5:157759/1‑137 (MQ=2)
                                                                                                       ccacctggccGATCCCCGCAAATCTGCCGTAGAAGCCGCTATCGCCCGAGCCAAAGCCCGCAATCTTGAACATCAACATGCTATTGGCGATCCAGAACTCCAG‑GGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaaa                                                <  7:419683/142‑1 (MQ=2)
                                                                                                         caCAGGAGGATCCTCGAAAAACCGCCGTCGAAGCAGCTATTGCCCGTGCAAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc                                              <  6:605946/150‑1 (MQ=14)
                                                                                                         aaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACCGGAGAACGGAGCACCAG‑ACCTCAGCCGAGATCACCGCACAGCCGCCGTCGTAGCCGCTCTTGACCGAGACaa                                                 >  4:1256700/1‑148 (MQ=2)
                                                                                                         aaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGAAGAAAGACGACTTCGAAAACACTATTGACCgtccgat                                                 >  5:530374/1‑142 (MQ=11)
                                                                                                           cAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCGAGGACGAGCG‑CTCGATACGCGACAAGCCGCCGGCGCAGCGGCGATTTCCCGTGCGaaccctc                                            >  6:1418426/1‑146 (MQ=2)
                                                                                                           cAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCGGGCCCAGCAACAGGCTAAAGCCGAGCCAGAGCAACAG‑CTCGATGCGCGCAAAGCGGCACGGGAAGCCCCTATTGCCCGCGcccacgccc                                            >  4:345360/1‑144 (MQ=14)
                                                                                                             ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAG‑GTAGATCCGCGCAAAGCGGCAGTAGCAGCGGCTATTGCCCGAGCTCAAgccaa                                           >  5:345126/1‑147 (MQ=11)
                                                                                                              gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCCCGCAAGCGGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCGGCAGTGGACGCCGCTATTGCCCGCGCCCATgcccgc                                          >  6:1105434/1‑150 (MQ=11)
                                                                                                                gtaTCCTCGCAAAACTGCAGGAGACGCAGCGATTCCCCGGGCCAAACGACGCAAGCTGGAAGAGCAACAGCATAATGCCGAGCCAGAACAACAG‑GGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaaa                                       <  8:259650/149‑1 (MQ=11)
                                                                                                                 gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCGAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGATCCAGAACAACAG‑GTCGATCCGCGCAAAGCGGCAGTGGAAGCCGCTATTGCCCgcgcgccggcgcgcac                                        >  6:81189/1‑137 (MQ=11)
                                                                                                                  aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGCTCCGCGCAAAGCCGCCGTAGCCGCGGCTATTGCCCGCGCCCATGCGCCCacacc                                     >  2:1822896/1‑150 (MQ=11)
                                                                                                                  aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGACCCAGAACAACAG‑GTAGATCCGCGCAAAGCAGCAGTAGAAGCGGCTATTGCCCGAGCACAAgccaaaaaacc                                     >  7:1744075/1‑142 (MQ=14)
                                                                                                                   tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCCAGCCCCGCAATCTGGACCAGCAACCTGCTAATGCCGCGGCAGAACAACAG‑GTCGATCCGCGAAAAGCGGCCGGCGCCGCGGCTATTGGCGGGGCCGAcgcgcgggcgggg                                    >  6:384853/1‑144 (MQ=2)
                                                                                                                      gcgcAAAGCCGCCGTGGAAGCCGCTATTGCCCGGGCCAAAGCCCGCAAACGGGAACAGCAAAAGGCTAATGCCGAGCCAGAACAACAG‑GTTGATCCGCCCAAAGCCGCCGTTGCAGCCGCTATTGCCCGCGCGCAAgcccaaaaaggcgcc                                 >  1:692113/1‑138 (MQ=255)
                                                                                                                       cgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCCCTCGACGCCGCTATTCCACGAGCCAAAGCCCGCAAACggccac                                >  3:836149/1‑147 (MQ=14)
                                                                                                                       cgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCAGCAACAGCAACCGTCTAATGCGGAGACAGAAGAACAG‑GGCGATCAGCGCAAAGCGGCCGTCGAAGCCGCTATTACACGAGCCAACGCGCGCACGCggggcg                                >  7:1390917/1‑148 (MQ=11)
                                                                                                                         cAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCAGTTGACGCCGCTATTGCCCGCGCCATAgcacgcccacccgacgcc                              >  4:651487/1‑139 (MQ=11)
                                                                                                                          atatttgcagtagtagcagcTATTTCAGGTGACAAATCTGGGAAGCTGGAAGATCAACAGGATAATTCCGAGCCAGAACAAGAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAg                              <  7:322928/136‑1 (MQ=14)
                                                                                                                          aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTGGATCCGCGCAAAGCGGCAGTCGAAGCGGCTATAGCCGAAGCCAAACCGCCGAAACTCGagcagc                             >  6:1092679/1‑151 (MQ=14)
                                                                                                                          aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCCAACGCCAGCAAACCCGAACAGc                             >  8:477991/1‑151 (MQ=14)
                                                                                                                           aaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAG‑GTAGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCAGCAAACGGGAACAGc                             >  4:1323214/1‑150 (MQ=255)
                                                                                                                               cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCCGTGGCCGCGGCTATTGCCCGCGCGAACGCCCGCAACCGCGACCAGCacc                          >  1:1392395/1‑147 (MQ=14)
                                                                                                                               cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGCGCACAAGCCAACAAACCCGAACAGCaca                          >  7:604796/1‑147 (MQ=14)
                                                                                                                                gccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAG‑GTGGATCCGCGCAAAGCGGCCGTGGACGCGGCTATTGCCCGCGCGAAAGCCAGAAAACCGGACCAGCagcagg                       >  2:1212373/1‑146 (MQ=11)
                                                                                                                                 gcgTGGAAGCCGCTACAGACCGGGGCACTGCACGCCAGCTGTCAGATCAAGTGGCCTCTTCCGATCGAGAAACCCAG‑GGCGATCCTCGGAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGc                      <  4:1877419/150‑1 (MQ=9)
                                                                                                                                  cgccgccgCCCCTATCGCCCGCGCCAAAGCGCGCAATTTTTTACAGCAAAAGCCTTAATACGAGCCAGATCAAGCT‑GACTCTAGTCGATAAGCCTCCTGCTAAGACGATATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCt                     <  2:1469570/144‑1 (MQ=2)
                                                                                                                                   gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCGGCCGTAGAAGCGGCTATTGCAAGAGACAAAGCTCGGAAACGGGAACAGCAACCGGCt                     >  3:538618/1‑150 (MQ=17)
                                                                                                                                     cGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCGAACGCGCGCAACCGCGAACAGCAACAGGCtta                   >  5:192139/1‑148 (MQ=14)
                                                                                                                                     cGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCAGTCGCAGCCGCTATTGCCCGCGCCCAGGCCAGCAAAGGGGCACAGCAGCAGGCtctt                  >  2:224063/1‑148 (MQ=14)
                                                                                                                                     cGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCAGCCGTCGAAGCCGAAATAACACCCTCCACAACGCACAAACGGGAACACCACCCGGCTAAt                  >  1:1362056/1‑151 (MQ=14)
                                                                                                                                      gAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCGAAGGCGCGCAAACGGGCCCAGCagcagggtcttg                 >  4:1397987/1‑140 (MQ=14)
                                                                                                                                      caaGCCGCTATTGCCCGTTTTTTATTACTCAAGCTGGAACACCAACAGTCTAATCCGGAGCTATACCATCTT‑TTCGAACAGGTCTATGTTGCGTTCTAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATg                 <  7:938715/150‑1 (MQ=255)
                                                                                                                                       aaGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTGGATCCGCGCAAAGCCGCAGTCGAAGCGGCTATTGCCCGCGCCAACGCCACCAAACGGGACCAGCACCAGGCTCAtcg                >  4:156241/1‑149 (MQ=14)
                                                                                                                                        aGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAG‑CTCCATCCGCGCGACGCGGCCGACGCAGAGCAGATACCACGAGCCAACGCACGCCACCGTGAACATCAAcaacaaaaagcg               >  7:661946/1‑140 (MQ=9)
                                                                                                                                              tATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGATAAAGCAAACCCAGCAGAAAAG‑GAAGATCAGCGCAAAGCCGCCGTCGAAGCCGGTATTGCCCGAGCCAAATAAAGCAACCGGGACCAGCAACCGGcgaggggggggggg         >  5:1087165/1‑138 (MQ=2)
                                                                                                                                               cgtGCCCGCGCCCCCGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGAAGAACAC‑CTCGATCCGCGCAACCCCGCCGTCGAAGCCGCTATTGCCCTAGCCAAAGCTCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCag        <  2:1313483/149‑1 (MQ=14)
                                                                                                                                                   cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGCGCGCACGCGCGCAAACGCGCCCAGCAGCAGGCTACAGCGGAACCagctgc    >  7:376248/1‑147 (MQ=14)
                                                                                                                                                     cGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGCGCGAAAGCGCGCAAACGCGAACAGCAGACGGCTCTTGACGAGCCagaagacc  >  2:564824/1‑149 (MQ=14)
                                                                                                                                                     cGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTAGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCACAAGCCAGCAAAGCCGAACAGCAACAGGATAATGACGAGCAAgaacaa   >  7:680127/1‑150 (MQ=11)
                                                                                                                                                       |                                                                                                                                                     
ACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG‑GTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAAC  >  NC_000913/1708655‑1708953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑