Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,392,4570GC24.3% 375.3 / 46.2 296intergenic (+22/‑15)glyV/glyXtRNA‑Gly/tRNA‑Gly
Reads supporting (aligned to +/- strand):  ref base G (51/123);  new base C (3/53);  total (59/237)
Fisher's exact test for biased strand distribution p-value = 1.02e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 301 total aligned reads displayed.

CTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTA  >  NC_000913/4392307‑4392603
                                                                                                                                                      |                                                                                                                                                  
cTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAACTTGCTG‑AAAGc                                                                                                                                                   >  2:1115481/1‑151 (MQ=255)
  cccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg                                                                                                                                                    <  4:115894/149‑1 (MQ=255)
  cccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc                                                                                                                                                   <  5:1824763/150‑1 (MQ=255)
    cGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGGATAGcacc                                                                                                                                                >  2:848677/1‑150 (MQ=255)
     gTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAg                                                                                                                                               <  3:51799/151‑1 (MQ=255)
      tAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGAATAGCGACTTCGAGTCTAATTTACCGCTCCAAAATTTTAAAAGTGCTGCAAACcacat                                                                                                                                               >  5:457813/1‑149 (MQ=25)
              cAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCaa                                                                                                                                      <  1:1374811/151‑1 (MQ=255)
               aGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGCCCGTGCAAAGCTCGCGGGCGCGCGGGCGACTCGCGTTTCCCGCTCCAATATTTTAAACGTCTTGCAAACAACAGACCCCCCacg                                                                                                                                     >  6:937050/1‑149 (MQ=16)
               aGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCACCGCCCCGACCCCCCaac                                                                                                                                     >  4:210644/1‑150 (MQ=255)
                gAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGc                                                                                                                                    <  7:1626082/151‑1 (MQ=255)
                 aaaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCg                                                                                                                                   <  4:855600/151‑1 (MQ=255)
                 aaaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCg                                                                                                                                   <  1:367280/151‑1 (MQ=255)
                  aaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCgg                                                                                                                                  <  6:263155/151‑1 (MQ=255)
                   aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCggg                                                                                                                                 <  2:29351/151‑1 (MQ=255)
                     gCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGaa                                                                                                                               <  4:1381626/151‑1 (MQ=255)
                     gCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACAACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGaa                                                                                                                               <  2:1922309/151‑1 (MQ=255)
                      cGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAAt                                                                                                                              <  3:883862/151‑1 (MQ=255)
                       gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATa                                                                                                                             <  8:863153/151‑1 (MQ=255)
                          aaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCt                                                                                                                          <  2:1671668/151‑1 (MQ=255)
                               cGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGATCAACACATTCCCAACGTCTAGGTCGAGAGTTCTAGTCTCCTTTGACGATACAAAATTTGAAAATTGATTAAAAAAAAAGACCCCCCAGGGGGGagggggtcgggg                                                                                                                     >  7:785956/1‑140 (MQ=12)
                                gAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTg                                                                                                                    <  8:217437/151‑1 (MQ=255)
                                    gCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGGACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCGCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTag                                                                                                                <  4:193043/151‑1 (MQ=255)
                                         aTTAAGTACTACTCGGGAATATATAAGTTTTTAGTGCTGGTCCTTTCGTATTTCGGTGTCGCTATTTCGAGTCTCGTTTCCGGCTCCAAAATTTGAAAAGTTCTGCAAACAACATACCAACCAAGCGGGAATAGCTCAGTTGGTAGAGCAc                                                                                                           <  7:1266870/151‑1 (MQ=9)
                                            aagaactaccctggAATACCACAGTTTGTAGAGCACGACCTTCCCCATCGCGGGGTCGCGAGATCGCCGCTCGTTTCCCCCTCCAAAATTTGAAAAGTCCTGCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGa                                                                                                         <  5:800042/138‑1 (MQ=14)
                                              gtagtaGGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTCCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTCCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAcc                                                                                                       <  4:422874/150‑1 (MQ=255)
                                                agtaCTCGGCAAAACCTAAGTTGGTAGCGCAGTACCTTCCGTACGTCGTGGGCGCGAGTTCGAGGCTCGTTACCCGCTCCTAAATTTGAAAAGTGCCCCAAATCACATACCACCGAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCtt                                                                                                     <  5:191476/150‑1 (MQ=9)
                                                    cgcgGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCGCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTAAGTTGGTAGAGCACGACCTTGCCa                                                                                                 >  8:1669522/1‑150 (MQ=255)
                                                     gcgGGAATAGCTCAGTTTGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGCGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAg                                                                                               <  8:574298/151‑1 (MQ=255)
                                                     cctggAATAGCTCAGTTGGTAGCGCACGACCTTCCCAAGGGCGGGCTCGCGAGTTCGAGTCTCGTTTACCGCTCCAAAATTTGAAAAGTCCTTCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAg                                                                                               <  5:1155608/148‑1 (MQ=14)
                                                       gggAATAGCTCAGTTTGTAGAGCACGACCTTGCCAAGGGCGGGGTCGCGTGTTCGAGGCTCGTTTCCCTCTCCAAAATTTGAAAAGTGCTGCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGt                                                                                             <  6:202858/151‑1 (MQ=14)
                                                       gggAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCTATTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGt                                                                                             <  8:1326732/151‑1 (MQ=255)
                                                        ggAATAGCTCAGTTTTTAGTGGTCGTGCTTTCGATGGTCTTTGTCGCTATTTCGAGTCTCGTTTCCGTCTCCTAAATTTGAAAAGTTCTCAATATAAAAGTCCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAGCTTGCCAAGGTc                                                                                            <  3:643663/151‑1 (MQ=2)
                                                        ggAATAGCTCAGTTGGTAGAGCAGGACCTTGCCAAGGGCGGTGTCGCGAGTTCGTGTCTCGTTTCCCTCTCAAAAATTTGAAAAGTGCTGCAAAGCAAATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTc                                                                                            <  8:1784158/151‑1 (MQ=14)
                                                        ggAATAGCTCAGTTGGTAGAGCACGAGCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTc                                                                                            <  4:777780/151‑1 (MQ=38)
                                                        ggAAAAGCTCAGTTTGTAGAGCTGGAGCTTCCGAAGTGCGTGGTCGCGAGATCGAGGTTCGTTTCCCTCTCAAAAATTTGAAAAGTTCTTAAAATCACATACCACGGAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTc                                                                                            <  5:1607574/151‑1 (MQ=2)
                                                         gAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGAAAAGCACAGACACCCCACGCGGGAAGACCTCAGTTGGGCGCGCACCACCTTGCCAAggggg                                                                                           >  4:552739/1‑148 (MQ=11)
                                                          aaTAGCTCAGTTGGTAGCGCACGACCTTGCCAAGGTCTTGGTCGCTAGTTCGAGTCTCGTTTCCCGCGCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgg                                                                                          <  8:1172138/151‑1 (MQ=255)
                                                           aTAGCTCAGTTGGTAGAGCACGACCTTTCCAAGTTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCATAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCggg                                                                                         <  3:1343788/151‑1 (MQ=255)
                                                           aTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCggg                                                                                         <  8:674711/151‑1 (MQ=38)
                                                                 cAGTTTGTAGAGCAGGACCTTTGCAACGTCGGGGTCGCTTGTTGGAGTCTCGTTTCCCTCTCCAAAATTTGAAAAGTTCTTCAAATCAAATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTc                                                                                      <  7:223822/148‑1 (MQ=14)
                                                                      ggTAGAGCACGACCTTGCCAATGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTc                                                                              <  3:1668206/151‑1 (MQ=38)
                                                                      ggTAGAGCACGACCTTGCCAAGTTAGTGGTCGCTAGTTCGAGTCTCGTTTCCCTCTCCAAAATTTGAAAAGTGCTGCAAACAACAGACGACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGtt                                                                               <  1:1502343/150‑1 (MQ=14)
                                                                      ggTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTc                                                                              <  3:1715055/151‑1 (MQ=38)
                                                                       ttAGAGCACGTGCTTGCCTAGGTAGGGGTCGTTAGTTCGAGTGTCGTTTCCCGCTCCTAAATTTGAAAAGTGCTCCAAAGCACTGACCTCGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTc                                                                              <  1:185538/149‑1 (MQ=14)
                                                                       gTAGAGCACGACCTTTCCAAGGTCGGGGTCGCTAGTTGGAGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCg                                                                             <  6:537048/151‑1 (MQ=255)
                                                                         agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGCGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGAACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg                                                                           <  8:1027930/151‑1 (MQ=255)
                                                                         agagCACGACCTTGCCAAGGGCGGGGTCGCGACATCGAGGCGCGTTACCCGCTCCAAAATTTGAAAAGTCCGCCAAACCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGa                                                                            <  2:1778832/150‑1 (MQ=14)
                                                                            gctcGACCTTTCCTAGGTAGTGGTCGCTAGTTCGAGTCTCGTTTCCCCCTCCAAAATTTGAAAAGTCCTTCACATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct                                                                        <  7:67663/148‑1 (MQ=14)
                                                                            gCACGAGCTTGCCAATGGCGGGGTCGCTAGTTCGAGTCGCGTTTCCCGCTCCAAAATTTGAAAAGTCCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct                                                                        <  6:700291/151‑1 (MQ=14)
                                                                            gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTCCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct                                                                        <  6:1340847/151‑1 (MQ=255)
                                                                            gCACGACCTTGCCAAGGTCGGGGTCGCGAGATCGACTCTCGGTTCCCGCTCCAAAATTTGAAAAGTGCTTCACACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct                                                                        <  2:1407236/151‑1 (MQ=14)
                                                                             gtggagcTTCCCAAGCTCTGGGTCGCGAGTTCGTGGCGCGTTTCCGCGTCCAAAATTTGAAAAGTCCTGCACAGCACAGACGACCCAAGCGGGAATAGCTCAGTGGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc                                                                       <  2:449887/145‑1 (MQ=14)
                                                                             cACGACCTTGCCTAGTTCGTGGTCGATAGTTCGAGTCTCCTTTCCCTCTCAAAAATTTGAAAAGTCCTCCAAATAACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc                                                                       <  3:1470401/151‑1 (MQ=14)
                                                                               ggACCTTGCGAAGTTCGGGGTCGCGAGTTCGAGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCACATCACAGACGACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCg                                                                      <  7:14447/149‑1 (MQ=14)
                                                                               cGACCTTGGCAAGCTCGTGGTCGCGAGATCGAGGCTCGTTTCCGCCTCAAAAATTTGAAAAGTGCTTCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGt                                                                     <  2:973974/151‑1 (MQ=14)
                                                                               cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGGTTCCCGCTCCAAAATTTGAAAAGTCCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGt                                                                     <  3:1509827/151‑1 (MQ=255)
                                                                                gACCTTGCCTAGGTAGGGGTCGCGAGTTCGACTCTCGTTTCCCGCTCATAAATTTGAAAATTCCTGAAAATAACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt                                                                    <  5:1019025/151‑1 (MQ=11)
                                                                                     ggggtatgTCGGGGTCGCTTGTTCGTGTGTCCTTACGCTCTCGTAAATTAGAAAAGTCGTTCAAACCACTGTCGTCCCAAGCGGGAATAGCTCAGTTGGTAGAGGACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTccc                                                                <  1:1223792/143‑1 (MQ=2)
                                                                                      gCCAAGCTCTGGGTCGCTAGTTCGAGGCGCGTTTCCCGCTCCAAAATTTGAAAAGTCCTGCACACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGc                                                              <  4:1830408/151‑1 (MQ=14)
                                                                                         aaGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGAAAAGCACAGACCACCCAAGCGGGAATAGCTAAGTTGGTAGAGAACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGcggc                                                           >  1:629967/1‑148 (MQ=255)
                                                                                             gatgggTCGCGATATCTCCTCTCGTTAACCGCTCAAAAATTTGAAAATTCCTCAACAAAACAGAACTCCCAAGCGGGAATAGCTCAGTTGCTAGAGCACGACCTTGCCAAGGTCGTGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaaaa                                                       <  4:486643/148‑1 (MQ=2)
                                                                                               ggggTCGCAAGATCGAGGCGCGGTTACCGCTCAAAAATTTGAAAAGTGCTGCAAATCACTGAACACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAtt                                                     <  6:432209/151‑1 (MQ=14)
                                                                                               ggggGCGCGAGCTCGAGTCTCGTTTCTTTATTAAAATTTTGATCAGAGCTGCAATGCATAGACGTCGCTCTCGCGTATTGCTCAGTTCGTAGATCTTGAGATTTCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAtt                                                     <  3:1106972/151‑1 (MQ=2)
                                                                                                gggTCGCGAGTTCGTGGCGCGTTTCCCGCTCCAAAATTTGAAAAGTTCTGCAAAGCTCATACCACCCAAGCGGGAATAGCTGAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAttt                                                    <  8:649118/151‑1 (MQ=14)
                                                                                                gggTCGCGAGATCGAGCCCCGTTACCCTCTCCAAAATTCGAAAAGTGCTCCACATAACATACCACCGAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAtt                                                     <  2:1275373/150‑1 (MQ=14)
                                                                                                 tgTCGCTAGATCGAGTCTCGGTTCCCCCTCAAAAATTAGAAAAGTCCTCCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAttt                                                    <  8:281012/149‑1 (MQ=14)
                                                                                                  gtcgctatttggtggctcGTTTCCCGCTCAAAAATTTGAAAATTCCGCCAAACCACAGACGACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTg                                                   <  2:629894/135‑1 (MQ=14)
                                                                                                    cgcgAGTTCGAGGGTCGTTACCGTCTCATAAATTTGAAAATTGCTTCATACAACAGACGACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaa                                                 <  3:1277783/150‑1 (MQ=14)
                                                                                                    cgcgAGATCGAGTCTCGTTTACCTCTCCAAAATTTGAAAATTGCTCCATAGAACATACCAACTAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaa                                                 <  3:548848/150‑1 (MQ=14)
                                                                                                     gcgTGTTGGCGTCTCGGTTCCCTCTCCTAAATTTGAAAAGTGCTGCAAATCACAGACGACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGGCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAg                                               <  7:108350/151‑1 (MQ=14)
                                                                                                       gAGTTCGCCGCTCGTTTCCCGCGCCAAAATTCGAAAAGTGCTCCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTg                                             <  6:1020244/151‑1 (MQ=14)
                                                                                                         gatCGAGCCGCGGTTCCCGCTCCAAAATTTGAAAATTGCTCCAAACCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCt                                           <  4:1550810/149‑1 (MQ=17)
                                                                                                          atCGAGGCTCGTTTACCTCTCCAAAATTTGAAAAGTGCTTCAAACCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCt                                           <  1:926201/149‑1 (MQ=17)
                                                                                                           tCGACTCGCGTTAACCTCTCCAAAATTCGAAAAGTGCTACAAACAAAAGAACACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTg                                          <  4:1445129/150‑1 (MQ=17)
                                                                                                              aggctcGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGAACATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAg                                      <  2:1214159/148‑1 (MQ=255)
                                                                                                                tctcGTTTCCCGCTCCAAAATTTTAAAAGTAATAAAAATCAAAAACCACCAAAGCGGAAAAACCTCAGTTGGTAGAACACGACGTTGCCAAGGTCGGGTTACCGAGTTCGAGGGTAGTTTAAAAAAAAAAAATTTGATAGTGCTGTAAggg                                    >  1:79213/1‑150 (MQ=2)
                                                                                                                 atcGTTACCCTCGCCAAAATTTGAAAAGTTCTTCATACAACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGca                                   <  1:657684/150‑1 (MQ=17)
                                                                                                                  tccttaccgtcTCAAAAATTTGAAAAGTCCTCAATATAACAGACGTACCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGca                                   <  5:1206896/140‑1 (MQ=14)
                                                                                                                   cggttccgccTCAAAAATTTGAAAATTCCTTAATATAACATAACACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGcaca                                 <  7:530260/142‑1 (MQ=14)
                                                                                                                   cggttaccccTCAAAAATTTGAAAATTGCTTCATATAACATAACACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGcaca                                 <  5:1306289/142‑1 (MQ=17)
                                                                                                                    gTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAg                                <  7:921384/151‑1 (MQ=255)
                                                                                                                    gTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAACCACAGACCACCCAAGCGGGAATAGCTAAGTGGGTAGAGCACGACCTTGACAAGGTCGGGGTCGCGAGTTCGAGGGTCGTTTCCCGCTGCAAAATTTGCATGTGCTgggcggcggtg                                >  6:347404/1‑141 (MQ=14)
                                                                                                                       tCCCACTCCAAAATTTGAAAAGTGCTGCAACGAACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGac                              <  6:1678220/150‑1 (MQ=255)
                                                                                                                        cccacgccAAAATTTGAAAAGTGCTGCAAACCACAGACCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGacc                             <  2:1520831/144‑1 (MQ=255)
                                                                                                                         ccGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAATGCACACacccc                           >  8:373389/1‑149 (MQ=255)
                                                                                                                          cGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTGTGAAAGTCATGTAAGCGCCAGaccccc                          >  2:672816/1‑151 (MQ=14)
                                                                                                                          cGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTTAAAGTGCTGTAAGTAACAGaccacc                          >  6:1594577/1‑151 (MQ=255)
                                                                                                                           gCTCCAAAATTTGAAAGCCGCTGCAACGCACACACCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCAccc                         <  4:660558/151‑1 (MQ=17)
                                                                                                                             gccAAAATTTGAAAAGTCCTCCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCaa                       <  8:1832462/150‑1 (MQ=255)
                                                                                                                              cctaaaTTGGAAAAGTTCTTCAAAAAACATACCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAg                      <  2:1001538/148‑1 (MQ=17)
                                                                                                                               aaaaaTTGGAAAATTCCTTCACATCACATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGc                     <  6:1780565/150‑1 (MQ=17)
                                                                                                                                 ataTTTGAAAAGTGCTGCAACGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCgg                   <  8:1607447/149‑1 (MQ=255)
                                                                                                                                   aTTAGAAAAGTGCTCCAAATAACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGa                 <  6:1073541/151‑1 (MQ=255)
                                                                                                                                      tGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGATGTAAGGAACAGACCAccccacagcgaaat              >  5:1366858/1‑140 (MQ=17)
                                                                                                                                       gAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTACCGCTCCAAAATATTAAAGAGAATTAAGGCACAGaccaaccacaagggattat             >  3:989361/1‑140 (MQ=14)
                                                                                                                                        aacaGTGCTCCACACCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAg             <  8:518594/147‑1 (MQ=255)
                                                                                                                                        aaaaGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATATGAAAGTCCTGTAAGGAACACACCACCCAACCGCCAATAGc            >  7:328290/1‑151 (MQ=17)
                                                                                                                                          aaGTCCTTCAAAACAAATACCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACATTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTCCTGTAAGGCACAGACCACCCAAGCGGGAATAGCTc          <  6:1268931/151‑1 (MQ=14)
                                                                                                                                             tgctgcAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGCTATTGATGAAATGTACACACCGCCCACCCgggtaatgggtggt       >  6:1284825/1‑140 (MQ=11)
                                                                                                                                             tgctgcAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATATTAAAGAACTATAATGAACAGACCACCCAAGAGGGAATatcagagt       >  3:272025/1‑144 (MQ=17)
                                                                                                                                                      |                                                                                                                                                  
CTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTA  >  NC_000913/4392307‑4392603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑