Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,269,9940GT36.0% 188.7 / 41.1 196intergenic (+392/+631)yhaC/garKpentapetide repeats‑related protein/glycerate kinase I
Reads supporting (aligned to +/- strand):  ref base G (24/86);  new base T (3/59);  total (27/169)
Fisher's exact test for biased strand distribution p-value = 3.82e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 201 total aligned reads displayed.

TGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGC  >  NC_000913/3269844‑3270143
                                                                                                                                                       |                                                                                                                                                     
 gAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGa                                                                                                                                                      <  5:199294/151‑1 (MQ=255)
 gAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGa                                                                                                                                                      <  7:1411441/151‑1 (MQ=255)
   aacccgcctaattttttttttACGTAAACCAGGTGATAATTACCGATCTGCTGTTTTCTTTTTTGTATA‑TCTGGTTGGTCATTCTTTCTTCTTTCTGCCCCTCCAAAAGGAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaaa                                                                                                                                                    <  6:1602627/136‑1 (MQ=2)
   aaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaaa                                                                                                                                                    <  2:710668/151‑1 (MQ=255)
    aCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAc                                                                                                                                                   <  1:587195/151‑1 (MQ=255)
    aCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAc                                                                                                                                                   <  6:1436047/151‑1 (MQ=255)
    aCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACACTCATTAAAGGTTCTGCCCCTCCAAAATAAAAAACCCCCCCAAGCGGGTTTTTTCGTTAACCAGGTggatc                                                                                                                                                   >  8:215778/1‑147 (MQ=14)
     cccGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACt                                                                                                                                                  <  8:1046501/151‑1 (MQ=255)
     cccGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACt                                                                                                                                                  <  8:755651/151‑1 (MQ=255)
     cccGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACt                                                                                                                                                  <  1:43307/151‑1 (MQ=255)
       cgccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                                                                                                                                <  7:873727/151‑1 (MQ=255)
         ccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc                                                                                                                                              <  6:868034/151‑1 (MQ=255)
         ccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc                                                                                                                                              <  7:154929/151‑1 (MQ=255)
          cgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGATATCTTAAGAGAATAGTGTAG‑TGAAAAATTATTCATATAACTGAACATCAAAAAGAAAAAACAATCAAAAAAAAAATAATACGTAAAACAGGTGTAACTGACCg                                                                                                                                             >  4:1388447/1‑151 (MQ=255)
           gtaccGGTTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGa                                                                                                                                            <  1:614658/147‑1 (MQ=255)
           ggAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGa                                                                                                                                            <  8:767076/151‑1 (MQ=255)
            gAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGGCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGAt                                                                                                                                           <  2:521241/151‑1 (MQ=255)
             cgctgTTAATTTCTTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGACGAAGCGGTTTTTTACTTAAACCAGGTTAAACTGACCGATa                                                                                                                                          <  3:1200671/147‑1 (MQ=11)
             cgaggTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCTCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATa                                                                                                                                          <  1:661750/148‑1 (MQ=255)
             aaCGGTTTATTACGTACATCAGGTAAAACTGAGCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATa                                                                                                                                          <  8:61731/151‑1 (MQ=255)
              aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATaa                                                                                                                                         <  6:954050/151‑1 (MQ=255)
                ggTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                                       <  1:1676530/151‑1 (MQ=255)
                  tttATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACCTTAATTGCTCTTTCTGCCCCGCCAAAAGGAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGGGAAACTGACCGCTaggggg                                                                                                                                     >  2:212435/1‑146 (MQ=14)
                   ttattaCGTACATCAGGTAAAACTGACCGATAAGTCTCTTTCTTTTGGGTATTGTTTCG‑TTGACAGTCATTAATCTTTCTGGGCCTCCAAAAGTATAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCg                                                                                                                                     <  6:1003304/150‑1 (MQ=14)
                   ttattaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCAACTTTCTGCCCCGCCAAAAGGAAAAAACCCCCGAAGCGGGGTTTTCCGTTAACCAGGTGCAACTGCCCGCTAAGcggg                                                                                                                                    >  8:662838/1‑148 (MQ=11)
                     atttCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGGCATTCATATTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctt                                                                                                                                  <  2:1132822/151‑1 (MQ=255)
                     attaCGTACATCAGGGAACTCTGAGCGATATGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCACTCCAAAAGTATAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGct                                                                                                                                   <  3:351088/150‑1 (MQ=14)
                        aCGTACATCAGGTAATACTGACCGATATGCCGCTTTCTTTTGTGTATAGTGTCG‑TGGACAGTCTTTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct                                                                                                                               <  1:1005428/151‑1 (MQ=255)
                          gTACATCATGAAATACTGATGGTTAAGACGATTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTAATCTTTCTGCCCCTCAAAAAGTTAAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt                                                                                                                             <  8:132002/151‑1 (MQ=11)
                           ttcataatgTAAAACTGAGCGATAAGCCGTTTTCTTTTGTGTATCGTGTCG‑TGGACAGTGTTTCTTCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGTAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt                                                                                                                             <  6:730065/142‑1 (MQ=11)
                            agaTCAGGTAAAACTGAGCGATAAGCCGTTTTCTTTTGTGTATAGTGTCG‑TGGACAGTGATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGTAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCtttt                                                                                                                            <  1:858737/148‑1 (MQ=11)
                             cATCAGTTAAAACTGAGCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTGATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg                                                                                                                           <  7:50757/150‑1 (MQ=255)
                             cATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCG‑TGGACACTCATTAATATTTCTGCCCCAACAAAAAAAAAAAAAAAACGAAGAGCGTAGTTAAGTAAAAAAGATTAAACAGACCGATaaaacaaattattttcc                                                                                                                          >  1:1308122/1‑136 (MQ=2)
                                  ggTAAAACTTACCTTTATTCTGCTTTCATTTTTCTATAGTGTCG‑TCGAAAGCGTTTCTTATTTCTGCCACTCAAAAATTATAAACCCGCCGAATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGtata                                                                                                                     <  3:1424643/151‑1 (MQ=2)
                                    tataaCTTACCGATAAGCCGCTTTCTTTTTCGTATTGTGTCG‑TGGCCAGTCTTTCATATTTCTCGCCCTCAAAAAGTAAAAACCCGCCGTAGCGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAg                                                                                                                    <  3:173791/147‑1 (MQ=11)
                                     aataCTGACCGATAAGTCGCTTTCTTTTGTGTTTAGTGTCG‑TGGACAGTCATTCATCTTTCTGGCCCTCCAAAATTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtg                                                                                                                  <  6:540026/148‑1 (MQ=11)
                                     aaaaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TCGACAGTCTCTCATCTTTCTGCCCCTCCAAAATTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt                                                                                                                   <  3:595733/150‑1 (MQ=255)
                                      aaaaTGTCCGATCAGGAGCTTTCTTGTGCGGCTCGTGTCG‑GCGACAGGCCAAGATCTTTCTCCCCCTCCACAAGTAAAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt                                                                                                                 <  8:936867/151‑1 (MQ=2)
                                       taatttccGATAAGTGGTTTTCTTTTTTTTTTTTTGTCG‑TGGACTGTGTTTTTTATTTCTGGCACTCAAAAATTAAAAACCCGCCGTAGCGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt                                                                                                                 <  3:295662/144‑1 (MQ=2)
                                       aaatGACCGATAAGCCGCTTTCTTTTTCGTATAGTGTCG‑TGGACATTCATTCATATTTCTGCCCTTCCAAAATTATAAACCCGCCGTATCGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTc                                                                                                                <  6:1345075/148‑1 (MQ=11)
                                        aCTGACAGATAATCCGCTTTCTTTTGGGAATAGGCGAG‑TCGACATTCTTTCATGTTTCAAGACGTCCAAAAGTAATATCGCGCCGTATCGGGTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCg                                                                                                               <  5:1471911/151‑1 (MQ=2)
                                           taCCGATATGCTGCATGCTTTTTTTTCTTGTCTCG‑TGGACAGTGTCTCATCTATCTCCCACTCCAAAAGTTCAAACCCGCCGTAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTg                                                                                                             <  5:1666101/149‑1 (MQ=2)
                                           gACCGATCAGCCGGTTTCTTTTTCGGCCCGTGTCG‑GGGACAGGGTTTCCTCTTTCTGCCACTCAAAAAGCACAAACCCGCCGCACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTg                                                                                                             <  7:201634/150‑1 (MQ=11)
                                           gACCGATAAGGCGCTTTCTTTTGGCTATAGTGTCG‑TCGACAGGCATTCCTCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTgg                                                                                                            <  2:322708/151‑1 (MQ=255)
                                            aCCGATAAGCGGTTTTCTTTTGGGTATAGTGTCG‑TCGAAAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTgg                                                                                                            <  8:417627/150‑1 (MQ=255)
                                             ccGATAAGCCGCTTTCATTTGCGTATAGTGTCG‑TGGAAAGTCATTCTTCTTTCTGCCCCTCAAAAAGTAAAAACCCGCCGAACCGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGAc                                                                                                          <  6:374214/151‑1 (MQ=11)
                                                 taatgatctttctttTTGGTATAGTTTCT‑TGGATATGAATTCTTTTTTCTTACACTACTATCTTCAGATCTCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGt                                                                                                       <  3:841314/143‑1 (MQ=2)
                                                   aGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGGCACTCATTGATCTTTGGGCCCCAGCCAAAGCAAAAACCCGCCCCACCCGGTTTTTACGGAAATCACGTGCAAATGCCCCAGAAGCCGCGGTCTTTTGTGGATActggagtctagacgcc                                                                                                     >  5:567146/1‑137 (MQ=2)
                                                      cGCTTTCTTTTGGGTCTCGTGTCG‑TGGACAGTCATACCTCTATCTCGCACTCCAAAATGAAAAACCCGCCGCAGCGGGTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtcattca                                                                                                 <  7:388870/151‑1 (MQ=11)
                                                          gtcagttGGCTATAGTCTCG‑TCGACAGTGATTCTTATTTATCGCCCTCCAAAAGTAAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCtt                                                                                             <  6:1467178/146‑1 (MQ=11)
                                                           gctttTGTCTATCGTGTCG‑GGGCCAGTGATTCATCTTTCTGGCACTCCAAAATTATAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCttt                                                                                            <  5:603675/150‑1 (MQ=11)
                                                                         tgtCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCgggttc                                                                                                                                >  5:1723614/1‑96 (MQ=14)
                                                                             cggcgaaaggcagtcatCTTTAGCCCACTCCAAAAGGAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCaaaa                                                                              <  5:1063774/135‑1 (MQ=11)
                                                                                ggACAGTCATTCATCTTTCTGCCCCTCCAAAATTAAATAAACTCATAAGCGGTTTTTTACGTAAACCAGGTGAATCTTACCTATAAGCCTCTTTGTTTTGGTTATTTTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCaa                                                                          <  6:1110339/149‑1 (MQ=11)
                                                                                ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCaaaa                                                                        <  5:386850/151‑1 (MQ=35)
                                                                                  ccagagactttacTTACTCCCACTCAACAAGGACAAACCCGCCGCACCGGTTTTTTACGTACAACAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAc                                                                      <  2:1142188/139‑1 (MQ=11)
                                                                                    aGTGATTCATATTTCTCCCCCTCCAAAATGACAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAccc                                                                    <  8:72743/151‑1 (MQ=11)
                                                                                    aGTCATTCATCTTTCTGCCCCTCCAAAAGTATTACAGAGCCGAAGGGTGATTTTAGGTAAACCACTGTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAccc                                                                    <  5:665302/151‑1 (MQ=11)
                                                                                     gtccatctaatatatGCCACTCCAAAATTACAAACCCGCCGTAGCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccg                                                                   <  5:2526/137‑1 (MQ=11)
                                                                                       caaataactatctcCCACTCAAAAAGTAAAAACCCGCCGCATCGGTTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgcc                                                                 <  1:116211/141‑1 (MQ=11)
                                                                                         ttcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTAAAACATAAGACGCTATAGTTTGGATATAGTGTAGTGAACAGTGATTAATAAGTATGGCCCGCCAAAATaaaaaaaaaaccg                                                                >  6:1668935/1‑143 (MQ=2)
                                                                                         gacttatttCTGGCACTCAACAATTAAAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgc                                                                  <  6:227266/142‑1 (MQ=11)
                                                                                         attttatttCTGCCACTCAAAAATTAAAAACCCGCCGTAACGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGa                                                               <  4:1586991/145‑1 (MQ=11)
                                                                                          tcttatttCTGCCACTCAAAAATTATAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGa                                                               <  6:582233/145‑1 (MQ=11)
                                                                                             tatatatggcacTCCACAAGCACAAACCCGCCGCAGCGGGTTATTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGaa                                                              <  6:693254/137‑1 (MQ=11)
                                                                                              atttCTGCCCCTCCAAAAGTCAAAACCCGGCGCCCAGGGTTTTTACGTTACACACGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgg                                                          <  8:1438040/150‑1 (MQ=11)
                                                                                                  atcccacTCAAAAATTATAAACCCGCCGCATCGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt                                                      <  1:368046/145‑1 (MQ=11)
                                                                                                   gcccccTCCACAAGGACAAACCCGCCGGATCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtttt                                                     <  2:1299614/149‑1 (MQ=11)
                                                                                                    gCCACTCCACAAGCACAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt                                                        <  7:1713662/147‑1 (MQ=11)
                                                                                                       ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGGTATAGTGTCGTGGGCAGTGCTTGGTCTTTATGGCCCTGCAGAAGCAAAAACCCGGCGCAGCGGGGGTTTACg                                                 >  2:858770/1‑151 (MQ=11)
                                                                                                       actcaaaaatttcaaaCCCGCCGAATCGGGTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg                                                 <  4:1097316/138‑1 (MQ=11)
                                                                                                         gcaacaagcacaaaCCCGCCGAACCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTa                                               <  2:917508/140‑1 (MQ=11)
                                                                                                         cccAACAGTAAAAACCCGCCGACCCGGGTTTTTACGTAAAACACCGGAACCTGACCGAAAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTa                                               <  5:753847/150‑1 (MQ=11)
                                                                                                          ccacaatcacaaaCCCGCCGCACCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGGCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGt                                                <  2:374830/139‑1 (MQ=11)
                                                                                                          caaaaatcataaaGCCGCCGTATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTa                                               <  1:1520307/140‑1 (MQ=11)
                                                                                                          caaaaaTTATAAACCCGCCGTATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTaa                                              <  4:1476540/149‑1 (MQ=11)
                                                                                                          caaaaaTTAAAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTaa                                              <  6:255661/149‑1 (MQ=11)
                                                                                                          caaaaaGTATAAACCCGCCGTATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTa                                               <  4:313975/148‑1 (MQ=11)
                                                                                                           cAAAAGTACAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTaaa                                             <  5:453237/151‑1 (MQ=255)
                                                                                                           aaaaaTTATAAACCCGCCGTAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTaaa                                             <  3:960973/150‑1 (MQ=255)
                                                                                                            aaaaGTACAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAc                                            <  5:90657/151‑1 (MQ=37)
                                                                                                              aaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGCTAAGCCGCGTTGTGTTGGGTATAGTGTCGTGGGCGCTGATTGAAGGTTCTGGCCCGGCAAAAACAAAAAACCGCCGGAGGGGGGTTTTGCGGaatggc                                          >  8:257251/1‑147 (MQ=2)
                                                                                                              aaGCAAAAACCCGCCGCACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa                                          <  5:1237990/151‑1 (MQ=16)
                                                                                                               aggaaaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg                                         <  8:686126/148‑1 (MQ=25)
                                                                                                                    aaaCCCGCCGTATCGGTTTATTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGa                                     <  3:537880/150‑1 (MQ=255)
                                                                                                                     aaCCCGCCGAAGCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaaa                                   <  1:770086/151‑1 (MQ=16)
                                                                                                                       cccGCCGCAGCGGGTTTTTACGTAAAACAGGTAAAACTGACCGATAAGCCGCTTTCTCTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACt                                 <  8:1220954/151‑1 (MQ=255)
                                                                                                                        ccgccgAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTg                                <  7:1013520/151‑1 (MQ=25)
                                                                                                                         cgccgTAGCGGTTTATTACGTATAAGAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa                               <  6:621640/151‑1 (MQ=11)
                                                                                                                         cgccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGGGTCGTGGACAGTAAATCATCATACGACCCCTCAAAAATCAAAAAACAAAGGCAGCGGGAGTTTACCGAAAACAGGTTaaaaaa                                >  2:842543/1‑147 (MQ=2)
                                                                                                                           cctacccGGGTTTTTTCGTATATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc                             <  6:1030162/145‑1 (MQ=11)
                                                                                                                           ccgtaacGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc                             <  2:1563644/145‑1 (MQ=255)
                                                                                                                           ccgCAGCGGTTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc                             <  2:729187/151‑1 (MQ=255)
                                                                                                                           ccgAATCGGTTTATTACGTAAATCAGGTTAAACTGAGCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc                             <  3:438977/151‑1 (MQ=11)
                                                                                                                            cgcaGCGGTTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCg                            <  5:881860/148‑1 (MQ=255)
                                                                                                                             gtatcGGTTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGa                           <  6:1535794/147‑1 (MQ=255)
                                                                                                                                ccGGGTTATTACGTACAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATaa                        <  8:599031/150‑1 (MQ=25)
                                                                                                                                 cGGGTTATTACGTACAACAGGTTAAACTTATCTATAATCCGCTTTCTTTTGTGTATAGTGTCGTGGAGAGTCATTCATCTTTCTTCCACTCTAAAAGCAAAAACCCGCCGAATCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg                       <  1:215623/151‑1 (MQ=11)
                                                                                                                                           cGTAAACAAGGTTAAACTGACCGATAAGAAGCTTTTTTTTGTTTATTGTGTTGTTGAGATTTTTTCTTATTTATGGCCCTCAAAAATCATAAACCCGCCGTATCGGTTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGctttctt             <  3:1295167/151‑1 (MQ=2)
                                                                                                                                                  cAGGTTAAACTGACCGCTCCGCCGCGGTCTTTTGGCTTTCGGCGCGGCGACACGCCTTCATCTCTCCCCCCCTCCAAAAGCAAAAACCCGCCGCACCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGta      <  5:529135/151‑1 (MQ=2)
                                                                                                                                                       |                                                                                                                                                     
TGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCG‑TGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGC  >  NC_000913/3269844‑3270143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑