Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,270,167 | 0 | C | G | 23.1% | 398.4 / 40.7 | 279 | intergenic (+565/+458) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
Reads supporting (aligned to +/- strand): ref base C (98/75); new base G (51/1); total (193/86) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.41e-10 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 280 total aligned reads displayed.
GTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGC > NC_000913/3270031‑3270317 | aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTGTGGGGGATAGCGTCGAGGCCAGTCAAGCATAGTATAGCACCTCCaaaaacaaaaac > 8:553605/1‑151 (MQ=11) tcattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGAGGCTAGGCATTCATGGTTGCGCGCCTCCAAAAGCAAAAACccgc > 1:1048108/1‑151 (MQ=11) caacacctcgctCTTCCCATCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACATTTTAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgc < 6:505062/140‑1 (MQ=11) gtttgatCTTTCTATCACTCCAAAATCTTAAACCCGCCGTATCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgcc < 8:1655197/146‑1 (MQ=11) ttcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCGTGGCAACTAAATCAAAATTGTGCCCCACCAAAAGCAAAAACccgccgc > 1:878494/1‑150 (MQ=11) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCGTTCTTTGGGGTAGAGCGACGGGGCAAGGCCTGCATGAGGGAGCGCCAACAAAAACAAAAACCCGCCGAAgg > 7:183832/1‑150 (MQ=2) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGGTTTCTTTTGGGTATAGCGTCGTGGCGAGTCAATCATGTTTTGGCGCCGGCAAAACCAAAAACccgggtaagcg > 1:206012/1‑143 (MQ=11) cTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGTGTATAGCGTCTTGTAAAGTCCATCAAAATTAAGCACCGTCAAAACCAAAAACccggagcagt > 2:1688398/1‑142 (MQ=11) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGGGAGAGCGTCGAGGCGAGTCATTCATCTTTATGCGCCACCAAAACCAAAAACCCGCAGaaccccg > 8:1699890/1‑146 (MQ=11) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTCAAACTGACCGATAAGCCGCTTTCTTTGGGGTAAAGCGTCGTGGCCAGTCCTTCAAAGTTAGCCCCCCACAAAAGCAAAAACCCCCCGCAG‑Cgcg > 3:538067/1‑149 (MQ=11) ttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAGCAGGTGAACCTGACCGATAAGCCGCGTTCTGTTGGGTAGAGCGTCGTGGCGAGGCCTTCATCCTGGGGCCCGCGCAAAACCAAAACCccgcctcagggggg > 1:1562809/1‑142 (MQ=2) tGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGGTTTCTTTAGGGGATACCGTCGAGGACAGGCAATCATCTTTACGCAGCGGCAAAACCCAAAACCCGCCTCAG‑CG‑CGtgtt > 6:1706705/1‑151 (MQ=11) cccTCCACAATCAAAAACCCGCCGGACCGGGTTTTTACGTAAACCATGTGAAACTGACCGATAAGCCGCATTCTTTTGGGTATAGCGTCGGGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTAc < 5:1272125/151‑1 (MQ=11) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTAGGGTATAGCGTCGTGGACAGGCAATCAAAGTTCGACGCCACCAAAACCAAAAACCCCCCGCAgagcgggattt > 6:365033/1‑140 (MQ=11) ccAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAGGCCGCTTTCTTTTGGGTATAGCGTCGTGGGGCGTGATTCATGATTGTGGCCCGCCAAAAGCAAAAACCCGCCGCCG‑CG‑GGGTTGTACGtt > 5:601584/1‑149 (MQ=11) acaatctgaaaCCCGCCGCACCGGTTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAAt < 4:1262596/143‑1 (MQ=11) aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGGCATTCATCGTTGTGCCCCTGCAAAACCAAAAACCCCCCGAAG‑CC‑GGGTGTTAccgtaat > 3:1289500/1‑145 (MQ=11) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAAAGTCAATCATCGTTATGCGCCGCCAAAAGCAAAAACCCGCCGCAG‑GC‑GGGTGTTACggtaatg > 2:1187703/1‑144 (MQ=11) agcccaaaCCCGCCGCACCGGGTTATTACGTAAACCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAg < 8:432057/146‑1 (MQ=11) cAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTCCTTCCTGGTGCTGCCCGGGCAAAAGCAAAAACCCGCCGCAG‑CGCGGTGTTTaggaaatgacgg > 3:1505931/1‑140 (MQ=11) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGGCAGGCCTTGATGGTTGTGGCCCGGCCAAAACAAAAACCCGCCGCAG‑CG‑GGgtttttagtttatgagggg > 5:697039/1‑137 (MQ=11) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAAAGTCAATAAAATTTAAGCACCAACAAAAACAAAAAACCGCCGAAG‑CG‑CGTTTTTAACTAAATCAAGTg > 4:1462794/1‑151 (MQ=11) aaaCCCGCCGAAGCTGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTTTGTATAGCGTCGTGGACAGTCATTCATCTTTCTGTCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGaa < 6:1365298/151‑1 (MQ=255) aaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCAAGGTTGTGCCCCAGCAAAACCAAAAACCCGCCGCAG‑CG‑GGGGTTTAAGTTAATCAGGTgca > 8:787747/1‑148 (MQ=11) cgccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCCATCATGGTTCTGCCGCAACAAAACCAAAAACCCGCCGAAG‑CG‑CGGTAGTACGGTAATCAGGTGaaaattt > 4:1013007/1‑147 (MQ=11) actaaGGGGTTTTTTAGGTAAACCAGGTGTAAGTTATTGATATGTCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGAcc < 2:586358/148‑1 (MQ=11) cgAAGCGGGTTTTTACGTAAACCAGGTGAATTTTTTTTATTTTTCGGTTTATTTTGGTTATATAGTCGTGGTAAGTCATTCTTTTTTTTGACGATGCTATTGCTATCTCCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCg < 2:389279/151‑1 (MQ=2) cgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTCATTCATCTTTGGGCCCCTCCAAAACCAAAAACCCGCCGCAG‑CG‑GGGTTTTTCGTAAATCAGGTGCAAATGAccc > 1:419660/1‑150 (MQ=11) cgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTCATTCAAGTTTGTGCCCCTCCAAAAGCAAAAAACCGCCGAAG‑CC‑GGGTTTTACGTAAATCAggggcaaattcccc > 1:839982/1‑139 (MQ=11) gAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTCATTCATGTTTGGGCGCCTCCAAAACCAAAAACCCGCCGAAG‑CG‑GGTGGTTACGTTAATCAGGTGAAAATGCCCgt > 1:229440/1‑150 (MQ=11) gAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAAAGGCAATCATCATTGAGCCCCCCCAAAACCAAAAACCCGCCCAAG‑CC‑CGGGTTTAACTAAATCAAGTGAAAATGACCg > 8:835206/1‑150 (MQ=11) aagagagTTTTTACCTACACGACGTTATTCTGATCTATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGAt < 2:1132935/145‑1 (MQ=11) accggtgtattACGTACACCAGCTTATTATTACCTATAAGCAGCTTTCTTATGCGAAACGGTTATTTGACTGTAATTCATCTTTCTGCGCCTCCCAAAGCTAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTTAAACTGACCGATa < 5:1493219/142‑1 (MQ=2) aGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGGCATTCAACGTTGGGCCCCGGCAAAAGCAAAAACCCGCCGCAG‑CG‑GGTTTTTAAGTAAATCATGTGAAACTGCCCgttc > 3:182898/1‑148 (MQ=11) cGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGGGTCGTGGACAGTAATTCATCGTTATGCCCCGGCAAAACGAAAAACCCGCCGCAG‑CG‑GGTTTTTAAGGAAATCAGGTGTAACTGCCCGATa > 8:1532645/1‑149 (MQ=11) tttttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTGGTGGAAAGTCAATCATGATGATGCGCCAGCAAAAGCAAAAACCCGCGGAAG‑AA‑CGGTTGTAAGGAAATCAGCAGAAAATTGCCCATAATCCgg > 7:255213/1‑151 (MQ=2) ttttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGGCATTCATCTTTCGGCCCCGCCAAAAGCAAAAACCCGCCGAAG‑CC‑GGTTTTTTAGTTAATGACGTGCAACTTACCCTTAAGCCggg > 8:760258/1‑151 (MQ=11) tttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGGCATTGATGTTTACGCCCCGCCAAAAGCAAAAACCCGCCGCAG‑CG‑CGGTTTTTCGTAAATCACCTGAAACTTCGCCTTAAGCCGGGt > 1:1138571/1‑151 (MQ=11) ttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTGAGCGCCTGCAAAAGCAAAAACCCGCCGAAGACG‑GGTTTTT‑CGTAAATCACGTGCAAATTTCCCATAAGCCGGGtt > 3:1183029/1‑151 (MQ=14) aCGTAAACCAGGTGAAACTGACCGATAAGCCGGTTTCTTTTGGGTATAGCGTCGTGGAAAGTCATTCATCTTTCAGCACCTTCAAAACCAAAAACCCGGCGAAG‑CG‑CGGTTTTAACTAAATCACGTGAAAATTACCGATAATCCGGGTTCt > 1:650059/1‑151 (MQ=14) tAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTATGCCCCTACAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTTCCCGATAATCCGGGTTCTGtg > 7:133786/1‑150 (MQ=255) aaaCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCGAGTCATTCATCTTTGGGCCCCGCCAAAAGCAAAAACCCGCCGCAG‑CC‑GGGTTTTTCGTGAATCAGGGGCAACTGAGCGCTAAGCCGGGTTgtgtgg > 6:646453/1‑149 (MQ=14) aaCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCAAGTCATTCATGTTTGTGCCCGGACAAAAGCAAAAACCCGCCGCAG‑GG‑GGGGTTTTAGGAAATCAGGGGAAAGTGAGCGATAAGCCGGGTTCTGtggg > 4:95806/1‑148 (MQ=14) aCCAGGTGAAACTGACCGATAAGCCGGTTTCTTTTGGGTATAGCGTCGTGGAGAGTCCTTCATGTTTGATCACCAACAAAAGCAAAAACCCGCCGAAG‑AG‑CGTTTTTACGTAAATCAGGTGAAAATGACAGCTACACCGGGTTTTgtggtg > 8:1095363/1‑151 (MQ=14) aCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCTTGGACAGTCATTCATAATTATGAACCACCAAAAACAAAAACACGCAGACG‑CC‑GGTTTTTAAGTAACTGAGGGGAAACTTACAGATAATCCGGGTTCTGtag > 2:901714/1‑147 (MQ=9) ccAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACACTCATTCATGTTTAGGCCCCACCAAAAGCAAAAACCCCCCGAAG‑CG‑GGGGTTTAAGTTAATCCCGGGCAACAGGCCGCTCAGCCGGGTTCTGtgcggg > 3:1452990/1‑146 (MQ=9) cAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGTCACTCAATCAACATTGGGCCCCCCCAAAAACAAAAACCCCCCGCAC‑CC‑CCGGTTTAAGGAAATAAAGTGGAAATGCCCGAGAAGCCGGGtggtgggggggg > 6:839587/1‑140 (MQ=2) cAGGTGAAACTGACCGATAAGCCGCTTTCTTTAGGGTATAGCGTAGTGGAGAGTCAATCATATTTATACACCACCAAAAACAAAAAACCCCCAAAC‑AA‑CGTTTTTAAGATAATCAAGAGAAAATTCCCCATAATCCGGGtaaagtagagc > 2:279186/1‑140 (MQ=2) aGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGTAAAGTAATTCAAATTTCAGCCCCTTCAAAATCAAAAACCCGCAGCAT‑CC‑GGGTTTTACGTAAATCACGTGAAAATTACCAAAAACCAGGGTTCAGTCGTgggt > 6:109292/1‑149 (MQ=9) aGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTCATTCATATTTAGGCCCCTACAAAAGCAAAAACCCGCCGAAG‑AG‑GGGTTTTAAGTAAATCAGGTGCAACTGACCGATAAGCCGGGTTgtgtagggggc > 6:538874/1‑144 (MQ=11) agcagACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCGTGTAGTTTAATTCATCTTTCTGCCCCTACAAATTCAAAAACCCGCTGAAG‑GT‑GGTTTTTACGTAATTCAGGTGTATCTGACCGATAAGCGGGGTTCTGTCGTGGACAGtcat < 4:1424527/147‑1 (MQ=14) aaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCATTCTGCCCCACCAAAAGCAAAAACCCGCCGAAG‑CG‑GGGTTTTACGTAAATGAGGTGAAAATGACCGATAAGCCGGGTTCTGTGGTGGACAGtcat > 7:438832/1‑151 (MQ=17) aCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTTTCTTTTAAATTCATTCATCTTTCTGCCACTCCAAAAGAAAAAACCAGACGAAT‑AG‑GGTTTTTACGTAAATCAGGTTATACTGACCGATAAGCCGGGTTCTGTCGTGGACa < 6:1508893/145‑1 (MQ=14) atgacctttattgttctttgtttTGGGTATAGAGTGTTTTATAGTCATTCTTCTTTATGCACTTCCTAAAGGAATATCTTGCGTAAG‑CG‑GTTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattc < 7:1644951/136‑1 (MQ=255) gACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCCCCGCAG‑CG‑GGTTTTTAAGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTATGTGGTGGACAGtcattcat > 1:353375/1‑151 (MQ=255) aCCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGAAAGTCATTCATCATTAAGCACCAACAAAACCAAAAACCCGCCGAAG‑AC‑GCTTTTTAAGTAAATCACGTGAAAATTACCCATAATCAGGGTTGTGTTGTGGAAAgggttgaa > 7:1029703/1‑142 (MQ=2) aCCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACACGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCCATAAGCCGGGTTGAGTCGTGGACAGtcattcct > 3:1564612/1‑148 (MQ=255) cGATAAGCCGATTTCTTTTGGTTATATTTTTTTTGATAGTCATTCATCTTTCTGCAACTCATAAATAAAAAATCTTTCGAAG‑CT‑GGTTTTTATTTAAATCTGGTTAATCTGATCGATAATCCGTTTTCTGTCGTGGACAGTCATTCATCTa < 2:217267/151‑1 (MQ=255) gATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTTAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCCTTCATCt > 7:854003/1‑149 (MQ=255) gATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCAACTTTCTGCCCCTCCAAAATCAAAAACCCCCCCAAA‑CG‑GGTTTTTAACTAAATCAGGTGAAACTGACCGATAAGCCCCGTTATGTCGTTGACAGTCATTCATCt > 2:741519/1‑149 (MQ=14) aTAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAACCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGGCAGTCATTAATCTAgg > 6:590347/1‑151 (MQ=255) gacgCCGCTTCCTATCGGGCATAGAGTCGTGGACAGTCATTCATCTTTCTTCCAATCCAAACCCAAAATCCCGCCGAAG‑CT‑TTTTTTTACGTAATTCAGCTGAAAGTTACCGATATGCCGGTTTCTGTCGTGGACAGTCATTCATCTAGGc < 5:541681/148‑1 (MQ=12) ccGCTTTCTTTTGGGTATAGCGTCGTGGAAAGTAATTCATATTTCAGCCCCTACAAAAGAAAAAAACCCCCCAAG‑CG‑CGGTTTTACCTAAATAATGTGAAACTTCCCGAAAAACCGGGTTCAGTCGAGGACAGTCATACATCTATGCCacc > 7:670305/1‑149 (MQ=12) cGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTCATTCATCTTTGTGCCCCGCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTATGCCAGc > 5:1038756/1‑150 (MQ=255) gCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTGATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAG‑CG‑GGTTTTTACGTAAATAAGGTGGAACTGACCGATAAGCCGGGTTCTGTCGTGGGCAGTCATTCATCTAGGCCAGCa > 3:784439/1‑150 (MQ=255) gCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTATGTCGTGGACAGTCATTCATCTAGGccacca > 5:1678855/1‑150 (MQ=255) ctttctttTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAt > 3:353336/1‑151 (MQ=255) gtctttTGCGTATAGTGTCGGGGACAGTCATTCATCTTACTGCCACTCCAAAAGCAAAAACCCTCCGAAG‑AG‑TGTTTTTTGGTAAATCAGGCTAAACTGAGCTATATTGCGGTTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCg < 8:285996/150‑1 (MQ=255) ctttTGGGTATAGCGTCGTGGGCAGTCATTGATCTTTGTGCCCCTCCAAAAGCAAAAAAACGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGGCAGTCATTCATCTAGGCCCGCAATCggt > 3:1672801/1‑149 (MQ=18) ctttTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCGGGGTTCTGTCGTGGCCAGTCCTTCATCTAGGCCAGCAATCGCt > 3:1544091/1‑151 (MQ=255) ttGGGTATAGCGTCGTGGGCAGTCATTGATGTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAG‑CG‑GGGTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGCCCGTCATTGATCTAGGCCCGCAATCGCTccc > 1:60282/1‑149 (MQ=18) tGGGTATAGGGTCGTGGACATTCATTCATCTTTCTGCACCTCCAAAAGCAAAAACGGGCATAAG‑CG‑TGTTTTTACTTAATTCTGGTTAAACTGATGGATTAGGGGGTTTGTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCAc < 2:1386307/150‑1 (MQ=18) tataGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGcg > 4:1153930/1‑150 (MQ=255) aGCGTCGTGGACAGTCATTCATCTTTCTGCCCCGCCAAAAGCAAAAAACCGCCGAAG‑CG‑GGTTTTTACGTAAATAAGGTGAAAATTACCGATAAGCCGGGTTATGTGGTGGCCAGTCATTCATCTAGGCCCGCAATAGCTCACTGGcaca > 4:1378243/1‑150 (MQ=18) gtcgtcGACAGTCTATCTTCTGTCTGCCCCTCCATACGGAAAATCCGGCCTAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagca < 8:1206611/151‑1 (MQ=25) gtcgtGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagc > 1:1225876/1‑150 (MQ=255) cgtGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCAAGCAATCGCTCACTGGCTCAagcagc > 5:1364128/1‑151 (MQ=255) tGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGGGTTCTGTGGTGGAGAGTCATTACGCTAGGCCATCAATCGGTACCTCGCTCAaccacac > 3:1126094/1‑147 (MQ=14) gggACAGGCATTCATCTTGCTGCCCCTCCAACAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAAGCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCt < 5:868338/150‑1 (MQ=255) gtaCAGTGATTCATCTTTATGCCCCTCCAAAATCAAAATTCCGCCGTAG‑CT‑TGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCt < 7:968614/148‑1 (MQ=25) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTAcc < 5:42105/151‑1 (MQ=255) aGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGGTTTCTGTGGGGGAGAGTGAGGGGTCGAGGCCAGCAAAGGGTCCCCCCCTCAAGCACCCAAcccc > 8:1428251/1‑150 (MQ=2) ggcattcctCTTTCTGCCCCTCCAAAAGCAAATGCCGGGCTCAG‑GT‑GGTTTTTTCGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCgg < 5:1731168/149‑1 (MQ=25) gTCTTTCTTTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCgg < 6:1791417/151‑1 (MQ=255) tacttcatATTTCTGTCTCTCCTTAATCTAATAGCTTCCGATG‑TG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCgg < 7:1269435/147‑1 (MQ=37) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGt > 6:1410151/1‑151 (MQ=255) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGATCACTGGCTCAAGCAGCCTACCAGGGt > 8:893992/1‑151 (MQ=255) attcatCTTTCTGCCCCTGCAATATAAAAATGCCTCCTAAG‑TT‑TTTTTTTACTTAATTCTGGTGAAAGTGATTGATTTTGGGTTTTGTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGtt < 2:327021/151‑1 (MQ=255) attcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 3:882476/107‑1 (MQ=255) attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCgggac > 3:1757929/1‑149 (MQ=255) attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCggg < 4:1755456/149‑1 (MQ=255) ttcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTc > 1:46413/1‑151 (MQ=255) tcatGTTTATGCCCAACAAAAAGCAATACCCCGAGTAAT‑GT‑GGTTTTTACTTAAATCAGGTGAAACTGCCCGATATTCCGGCTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTc < 3:1041392/150‑1 (MQ=255) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGt > 7:1168810/1‑150 (MQ=255) atttGTGCGCCTCCAACATCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTAc < 3:1732464/150‑1 (MQ=255) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACg > 4:326198/1‑151 (MQ=255) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACg > 8:695461/1‑151 (MQ=255) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACg > 1:1739825/1‑151 (MQ=255) ttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACgg > 1:940089/1‑151 (MQ=255) cTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGc > 6:1214113/1‑151 (MQ=255) | GTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAG‑CG‑GGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTACCCGGGTTCAGTACGGGC > NC_000913/3270031‑3270317 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |