Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,606,1920GC25.8% 134.5 / 19.3 103intergenic (‑27/+8)leuV/leuPtRNA‑Leu/tRNA‑Leu
Reads supporting (aligned to +/- strand):  ref base G (16/53);  new base C (0/24);  total (16/87)
Fisher's exact test for biased strand distribution p-value = 9.43e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 105 total aligned reads displayed.

AAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAAC  >  NC_000913/4606042‑4606338
                                                                                                                                                       |                                                                                                                                                  
aaaTCAAGGAAGAAACAAGAACGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCg                                                                                                                                                    <  3:1640430/151‑1 (MQ=255)
aaaTCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGGGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCg                                                                                                                                                    <  6:579606/151‑1 (MQ=255)
 aaTCAAGGAATAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGc                                                                                                                                                   <  2:1132976/151‑1 (MQ=255)
  aTCACGGAAGAATCAAGAAAGGACGTAACTATATTTGGGGCGCGGGGGGGCACTTTAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGcc                                                                                                                                                  <  8:628284/151‑1 (MQ=18)
   acaagcaagAACCAACAAAGCACTTAAAGATAATGGGGGCGCGGGGGGGCCCTGCAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCt                                                                                                                                                 <  7:1271822/150‑1 (MQ=18)
    cAAGGAAGAAACAATAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTc                                                                                                                                                <  7:967182/151‑1 (MQ=255)
     acggAAGAACCACCAAAGGACCTACAGATAATTGGGGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCg                                                                                                                                               <  4:712825/149‑1 (MQ=18)
     aaGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCg                                                                                                                                               <  8:1168615/151‑1 (MQ=255)
     aaGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCg                                                                                                                                               <  8:145089/151‑1 (MQ=255)
      acgaacaaccaccaaaGTACGTAACTATAATGGGGGCGCGGGGGGGCACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGt                                                                                                                                              <  7:657841/138‑1 (MQ=18)
      aGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGGGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGt                                                                                                                                              <  4:1397932/151‑1 (MQ=255)
        gaagaaACAAGAAAGTAAGAAACGATATTTGGTGCGAGGGGGGGGACTTGACCCCCG‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCTCACAGTCATCTTACTTTTTTTGATATCGCCTCGttt                                                                                                                                            <  3:1043257/151‑1 (MQ=21)
         aacaaaCAAGAAAGGAAGAAAATATAATTGGTGCGCGGGGGGGGCCTTGACCCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTg                                                                                                                                           <  4:877538/148‑1 (MQ=21)
          agaaACAACAACGGACGTAAAGATAATTGGGGCGCGGGGGGGGACTTGACCCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTgg                                                                                                                                          <  4:218627/151‑1 (MQ=21)
          acaaaCAAGAAAGGAATTAAAGATAATGGGGGCGCGGGGGGGGACTTCAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTgg                                                                                                                                          <  3:575464/149‑1 (MQ=21)
           aaaaCAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGt                                                                                                                                         <  8:1614694/150‑1 (MQ=255)
            aaaCAAGAAAGGATGTAAAGATAATTGGTGCGTGGGGGGCGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTg                                                                                                                                        <  5:1413210/151‑1 (MQ=255)
            aaaCAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGAGACTAACACCTGACGGTAGCGCGTCTAGCAATTACGGCCCCTTCGCACAGGGAGCTCACTTTTAATGATATCGGCGCggtgggtg                                                                                                                                        >  5:384582/1‑151 (MQ=17)
             aaCAAGAAAGGAAGTAAAGATAATGGGGGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGc                                                                                                                                       <  7:1690710/151‑1 (MQ=255)
               cacgaacgcaactAAACATAATTGGGGCGAGGGGGGGGACTTCAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGa                                                                                                                                     <  2:532937/139‑1 (MQ=21)
                aaGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGAATTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAg                                                                                                                                    <  1:1280481/151‑1 (MQ=255)
                aaGAAAGCAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAg                                                                                                                                    <  6:1619279/151‑1 (MQ=255)
                 acaaaCGAATTAAATAATATGGGGGCGTGGGGGGGGCCGTTCACCCCC‑ACGTGCGTAACGAAACTAACACCTGTACCTACCGCGTGTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAgg                                                                                                                                   <  6:47835/149‑1 (MQ=16)
                  caaaGCAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAggg                                                                                                                                  <  4:1521477/150‑1 (MQ=255)
                    acgtcaGTTAATATAATTGGGGCGCGGGGGGGGAGTTGAACCGCA‑ACGGCCGTAAGGACAGTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAggggg                                                                                                                                <  6:1226866/146‑1 (MQ=21)
                    aaGGACGTAAAGATAATTGGTGCGCGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAggggg                                                                                                                                <  4:1080436/151‑1 (MQ=255)
                    aaGGAAGTAAAGATAATTGGGGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAggggg                                                                                                                                <  1:1410161/151‑1 (MQ=255)
                     aGGTAGTAAAGATAATTGGTGGGTGGGGGGGGAGTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAgggggg                                                                                                                               <  1:1655513/151‑1 (MQ=255)
                     aGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAgggggg                                                                                                                               <  5:1323158/151‑1 (MQ=255)
                       taaGTTAAGATATTTGGTGCTTTGGGGGTGATTTGAACGGCC‑TCGTGCGTAAGGACACTTACACATGAAGCTAGCGCGTCTACGAATTCCGGCACCTTCGAACAGTCATCTTAGTTTTTTTTTTATCGCCTCGTTTGGTGCGAggggggg                                                                                                                              <  4:1181790/149‑1 (MQ=255)
                       gatgTATAGATAATTGGGCCGGGGGGGGCGACTTGAACCCCC‑ACGTCCTTATGGACACTAAATCCTGAAGCTACCTCGTCTACCAATTCCGCCACCATCGCACAGCCATCATACTTTTTTTGATATCGCCTCGATTGGTGCGAgggggggg                                                                                                                             <  3:129504/148‑1 (MQ=255)
                       gAAGTAAAGATAATTGGGGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAgggggggg                                                                                                                             <  8:733554/151‑1 (MQ=255)
                        aaGTACAGATAATTGGGGCGAGGGGGGGTCCTTCAACCCCC‑ACGTCCGGAAGGACACTAACACCTGAAGCTCGCCCGGCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGa                                                                                                                            <  3:1021373/151‑1 (MQ=25)
                        aaGTAAACATATTTGGGGCGGGGGGGGGTCCTTCCACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGGCTACCAATTCCGCCACCTTCGCACACTCATCTTACTTTTTTTGATATCGCCTGGTTTGGTGCGAGGGGGGGGa                                                                                                                            <  5:322604/151‑1 (MQ=21)
                           caaacaaaaTTGGGGCTAGGGGGGGTACTTGCACCCCC‑ACGTCCGTAAGTACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCATACTTTTTTTGATATCGCCTCCTTTGGTGCGAGGGGGGGGACt                                                                                                                          <  8:1021129/143‑1 (MQ=21)
                           aaaaaaaatttGGGGCGAGGGGGGGTACTTCAACCCCC‑ACGTCCGTAACGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACt                                                                                                                          <  5:1513690/141‑1 (MQ=21)
                            aaaGATAATTGGGGCCAGGGGGTTGTCTTCAACCCCC‑ACTGCCGGAACGACACTCACACATGATGCTAGCTCGGCTACCAAATCCGCCACCTTAGCACAGTCATCTTACATTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTg                                                                                                                        <  8:582796/151‑1 (MQ=25)
                                aTAATTGGGGCGATGGCTGGTCCTAGAAGCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACGAATTCCGCCACCTTCGCACACGCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAAcc                                                                                                                    <  8:1774559/151‑1 (MQ=21)
                                   aTTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACATAACTAAAGACACTAAAAAATGAAAATAGAGACTAAACCAATTAAGAAAACTTAGCACAGACATAGAAAAAAAAAAAATATCGCGTCGTGTGGTGCGAGGGGGGGGACGTGCAccccc                                                                                                                 >  4:662845/1‑151 (MQ=255)
                                      ggggccctgggggggACTTCAACCCCC‑ACGGCCGTAACGACACTAACACCTGAAGCTACCCCGTATACCAATTCCGCCACCTTCCCACACTCATCTTACTATTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACg                                                                                                              <  2:786440/143‑1 (MQ=25)
                                      ggggCGAGGGGGGGGACTTCAACCCCC‑ACGTCCGAAAGGACACTAACACCTGAAGCTACCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACg                                                                                                              <  1:1145446/148‑1 (MQ=255)
                                        ggccttgggggtgCCTTGAACCCCC‑CCGTCCCGAACGACACGAAACCCTGCAGATACCCCTGATACCAAATCCGCCAACTTCCCACAAGGATCATACATTTTTTGAAATCCCCTGCTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTc                                                                                                            <  5:1799479/145‑1 (MQ=255)
                                        ggccaGGGGGGGGCCTTGCACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTACCTCGTCTACCAATTCCGCGACCTTCGAACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTc                                                                                                            <  3:14456/147‑1 (MQ=25)
                                         gcttggggggtgACTTCAA‑CCCC‑ACGTCCTTAAGTACACTAACACATGAAGCTAGCGCGTCAACCAATTCCGCCACCTTCGAACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCg                                                                                                          <  6:1010191/147‑1 (MQ=25)
                                          ggcggttgggaACTTCAACCCCC‑ACGTCCTTAATTACATTAAAACATGAAGCTTTCTCGTATACCTATTCCGCCACCTTCCCACATTCATCTTACTTTTTTTGATTTCTCCTCTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCg                                                                                                          <  6:351248/144‑1 (MQ=19)
                                          cctgtggggtgACTTCAACCCGC‑ACGTCCGTAATGACACTCACACCTGAAGCTCTCCCGTCTAGCAATTCCGCCACCTTCCCACACGCAACTAACTTTTTTTGATATCCCCTCCTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCg                                                                                                          <  8:1335735/146‑1 (MQ=21)
                                          cattgggggggCCTTCAACCCCC‑ACGTCCTTAAGGACACTAAAACCTGAAGCTAGCGCGTATACCAATTCCGCCACCTACCCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCg                                                                                                          <  5:1258969/147‑1 (MQ=37)
                                              tgtttttcctacaaCCCCC‑CCTGCCGTTATTACATTAACACCTGATGATACCCATTATACCAATTCCGCCACCAAAACTCAGGCATCTAACTTTTTTTGAACTACCCTCTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTaa                                                                                                       <  1:745985/138‑1 (MQ=9)
                                                     catcccaCCCCC‑CCGTCCCTAATTACACTAAAACATGATGATACCCCGTATACCAATTCCGCCACGTAACAACATTCATCAAACTTTTTTTGAATTACCCTCTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACt                                                                                                <  6:929291/144‑1 (MQ=12)
                                                     aCTTCACCCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCTTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTa                                                                                               <  5:1294388/151‑1 (MQ=255)
                                                       gtGAACCCCCAACGTCCCTAAGGACACTAACACCTTAAGCTAGCGGGTCTACTTATTCTGTCACGTTATAACATTGATCTTACTTTTTTTGATTTATCCTTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTaa                                                                                              <  4:1399805/150‑1 (MQ=16)
                                                        ccaaCCCCC‑ACGGCCTTAAGTACACTAAAACCTGAAGATCCACCTTAAACCAAATCCGCCACCAAAAAACACGCATCAAACTTTTTTTGATATACCCTCTTTTGGTGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAac                                                                                             <  5:1403424/148‑1 (MQ=12)
                                                         ccaCCCCC‑ACGTCCGCAAGGACACTACCACCTGAAGCTACCGCGTCAACCAATTCCGCCACCTTCCCACAGTCATCAAACTTTTTTTGATATCCCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAacac                                                                                           <  3:57583/149‑1 (MQ=37)
                                                            ccccg‑ACGGCCGTAACGACACTAACTCCTGCTGCTACCCCTTCTACCAATTCCGCCACCATACCTCATTCATCATACTTTTTTTGAAATCCCCTCTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTg                                                                                        <  6:1742737/151‑1 (MQ=18)
                                                            ccccc‑ACGTCCGTAAGGACACTAACACCTGAAGCTCGCGCGGCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATAGCCTCTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTg                                                                                        <  5:611538/151‑1 (MQ=255)
                                                             cccc‑ACGGCCCTAAGTACACAAACACCTGATGATCGCCCGTAAACCAATGCCGCCACCAACCCACAGTCATCAAACTTTTTTTTATATCCCCTCGTTTGGGGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGa                                                                                       <  5:1723585/151‑1 (MQ=16)
                                                              gcc‑ACGTCCTTATGTAGAGTAAAACATGATTCTATCTCTTATACAAATTCCGCGAGCTTACCAAACTCAAGTAACTTTTTTTTATTTCGCCTTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGaa                                                                                      <  5:1247741/150‑1 (MQ=9)
                                                                    ggcctatattacacTCAAACATGATGATACCACGTATTCCAATTCCGCCACCTTCAAACATTCATCAAACTTTTTTTGATTTCCCCTTTTTTGGGGGGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAg                                                                                 <  7:391581/141‑1 (MQ=12)
                                                                       cGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACAAATTAAGACACATTAGCACAGTAATATTAATTTATAAGATATAGATTAGTGTGGTGGGCGGATGTGTAAAAAAAAAACCACGTCCGTAAGAACACTAGCACCTGGAGCTAgggg                                                                              >  6:498461/1‑148 (MQ=9)
                                                                                   aaCACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTAGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAAt                                                                    <  8:203954/149‑1 (MQ=255)
                                                                                    accccTGAAGCTAGCGCGTATACAAATGCCGCCACCTGCCCACATGAATCTTACTTTTTTTTATAGCCCGTCGTTTGGTGGGGGGGGGGGGACTTCAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTcc                                                                 <  5:1009855/148‑1 (MQ=18)
                                                                                     aacCTGATGCTCGCCCTGCTACCAATTCCGCCACCAACCCACACGCATCTTACTTTTTTTGATCTCGCCTCCATTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCg                                                                <  3:400925/150‑1 (MQ=18)
                                                                                        atgaagatacaacgTCTACCAATTCCGCAACAAAAACACAGTAATATAAAATATTTTTATATCCCATAGTTTGGGGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCa                                                             <  1:1413807/139‑1 (MQ=9)
                                                                                             gattcacattatattaaTTCCGCCACCTAAAAACAGGCATCAAACATTAATTGATTTACCCTCGTTTGGGGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTc                                                        <  1:1731953/136‑1 (MQ=9)
                                                                                             gatcgagattaaacaaaTGCCGCCACCTACACACAGGCATCAAACTTTATTTGATATCCACCTTTTGGGGGCGCGGGGGGGGACTTCAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTc                                                        <  5:116184/136‑1 (MQ=9)
                                                                                                 attattattccAATTCCGCCACCAAACCACACGCATCAAACTTTATTTGATATACAGTTTTTTGGTGCGAGGGGGGGGACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGccc                                                    <  1:1735814/142‑1 (MQ=11)
                                                                                                    cgTATACCAATTCCGCCACCTACCCACAGTCATCTAACTTTTTTTGATATCCCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGt                                                 <  8:816663/151‑1 (MQ=255)
                                                                                                      gattggaaTTCCGCCACCAAAACACAGTCAACAAACTTTATTTGAAATCCCGTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGc                                               <  1:206196/145‑1 (MQ=17)
                                                                                                           cAATTCCGCCACCTTCGCACAGTCATATTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGTGGGGGGCCTTGAACCCCAACGTCCGTAAGAAAAGTAACACATGCCGCTAGCGCGTCTACAAATTCCGCAACCTTAGccaacgtgcaggt                                          >  8:753842/1‑140 (MQ=255)
                                                                                                           cAATTCCGCCACCTTCGCAAACTCAGATTACTTTTAAAGATATCGACACGTTTCGTGCGAGGGGTGGGACTTGCACCACCACGTCCGTAAAGAAACTAACACCTGAAGCTAGCGCGACTAACAATTCCGCAACCTTCAccaacgaagaat                                           >  6:1472866/1‑140 (MQ=9)
                                                                                                              ttCCGCCACCTTCGCACAGTCATATTAATTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcagagggggatgt                                          >  7:416917/1‑136 (MQ=18)
                                                                                                               tCCGCCACCTTCGCAGAGTCATATTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGCGGGGGACTTGAACCCCAACGTCCGTAAGAAAACTAACACCTGAAGCTAGAGCGTCTAAAAATTACCCAAACTTCGcaaacgttcaggaata                                       >  7:621103/1‑135 (MQ=255)
                                                                                                               tCCGCCACCTTCGCACAGTCAGCTTACTTTTTTTGATATCGCAGCGTGTGGTGCGAGGCGGGGGACTTGAACCCCCACGTCCGTAAGAAAACTACCCCATCAAGCTAGCGCGTCTAAAAATTCCGCCACCTTCGccgaagaccagatatt                                       >  7:7977/1‑136 (MQ=18)
                                                                                                               tCCGCCACCTTCGCAAAGTCAGATTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGTGGGGCTTTAACCCAAACGTCAATAAGAAAAATACAACATACATCTAACGCGTGTACCAATTACGACACCTTCGCCGAgacgaagatcta                                       >  7:1762926/1‑139 (MQ=255)
                                                                                                                ccGCCACCTTAGAACACGCATGTTACTATATTGGATATACCGTCATTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAatat                                      <  8:253681/150‑1 (MQ=17)
                                                                                                                  gCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCGAGTGGGacgtctttaa                                    >  1:239963/1‑141 (MQ=255)
                                                                                                                   ccACCTAAGCACATGCATCAAACTTTTTTTGAACTCCCCATCTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAc                                  <  1:1615093/151‑1 (MQ=17)
                                                                                                                    cACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCCAGAAATTACAACg                                 >  5:26976/1‑151 (MQ=255)
                                                                                                                      ccaaacaacaGGCATCTAACATTATTGGATTACCCCTCGTTTGGGGCGCGGGGGGGGACTTCACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTg                               <  5:1584066/144‑1 (MQ=17)
                                                                                                                       aaactatcaGTCATGTAACTTTTTTTGATTTCGCGTTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTgg                              <  6:619848/144‑1 (MQ=18)
                                                                                                                        aaacaacaGGCAACTAACTTTTTTTGAACTACCGACTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGt                             <  1:392913/146‑1 (MQ=17)
                                                                                                                        aaaaaacacTCAACTAACATTTTTTGAAATAACGTAATTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGt                             <  3:670121/146‑1 (MQ=17)
                                                                                                                           aaacaTTCATCTTACTATATTTGATTTATCGTTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGtttt                          <  6:1541616/149‑1 (MQ=17)
                                                                                                                           aaacaGGCATCTAACTTTTTTTGAATTCCCCTCCTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGtttt                          <  5:1473464/149‑1 (MQ=18)
                                                                                                                            aacaTTCATGTTACTTTTTTTGATTTCTCCTCTTTTGGTGCGAGGGGGGGGACTTGAACCCGCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGttttt                         <  2:1448177/150‑1 (MQ=21)
                                                                                                                             acatgcatcaaaCTTTTATTGACCTCGCCACTATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTg                        <  2:374290/140‑1 (MQ=17)
                                                                                                                              gatggaagtaaCTTTTTTTGCTTTCTAGTCTTTTGGTGCGAGGGGGGGGACTTGAACCCCCTCGTCCGTAAGTACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTg                        <  6:1158927/140‑1 (MQ=17)
                                                                                                                              aaggcaagaaaCTTTAATTGATATCCCCTCATTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTgg                       <  8:647904/141‑1 (MQ=18)
                                                                                                                               attgatgtaagtttttttGATTTAGCCTTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGt                      <  5:1433606/140‑1 (MQ=18)
                                                                                                                                gtgaTCTAACTTTTTTTGATCTCACGTCTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTg                     <  3:1402051/148‑1 (MQ=18)
                                                                                                                                 tgatgatacattaattGATTTCCCCTTCTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTg                     <  8:1609618/136‑1 (MQ=18)
                                                                                                                                   aTCATACTTTTTTTTATGTAACGTATTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGa                  <  2:791627/151‑1 (MQ=18)
                                                                                                                                    agaaaCTTTATTTGATATATCGTTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAg                 <  3:776170/147‑1 (MQ=18)
                                                                                                                                     cTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc                                                     >  6:386851/1‑114 (MQ=255)
                                                                                                                                       aaCTTTTTTTGATAGCGCGTCGTTGGGGGCGGGGGGGGGGACTTCACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAgggg              <  5:1586191/150‑1 (MQ=21)
                                                                                                                                       aaCTTGTTATGATGTACCCTCTCTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAATCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAggg               <  6:1474951/149‑1 (MQ=18)
                                                                                                                                        aatttaattGATTTCACGTCATTTGGTGCGATGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAgggg              <  3:256326/143‑1 (MQ=18)
                                                                                                                                                tGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCAAGAGAGAGAAATATAAAAGAGGTTATTCGAGCGAGGCGCGGGagtgt     >  2:1750055/1‑147 (MQ=17)
                                                                                                                                                tGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCAACTACCAGATATAAAAAAGACGTTTTAGGTGCGAggggcggtcattg     >  8:171507/1‑145 (MQ=14)
                                                                                                                                                   tatCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCTAGAAAGAGATATATAAACGTGTTGATTGCTCCGAGGGGGAGGCGTTGagg  >  2:1166081/1‑149 (MQ=14)
                                                                                                                                                       |                                                                                                                                                  
AAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCC‑ACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAAC  >  NC_000913/4606042‑4606338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑