Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,708,7580GC23.7% 143.3 / 31.1 122E614Q (GAA→CAA) rsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base G (36/51);  new base C (4/23);  total (40/82)
Fisher's exact test for biased strand distribution p-value = 1.17e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 130 total aligned reads displayed.

GCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGC‑CGTCGAAGCCGCTATTGCCCGAGCCAA  >  NC_000913/1708608‑1708906
                                                                                                                                                      |                                                                                                                                                       
ccccgggcacaaGCGCGCAATCTGGAACAGCAACAGGCTACTGCGGAACCAGCACCCGAGGCCGATCCGCGCAAAGCGGCCGTGGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaag                                                                                                                                                         <  4:1223801/141‑1 (MQ=14)
 cccGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaaga                                                                                                                                                        <  4:824285/151‑1 (MQ=255)
 cacgcgCCAAACCCCGCAAGCTGGAACACCTACAGGCAAATGCGGAACCAGAACAACTGGGCGATCCTCGCAAACCCGCCGTCGAAGCAGCTATAGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaaga                                                                                                                                                        <  5:1254358/149‑1 (MQ=14)
   cgcgCCAAAGCGCGCAAGCTGGAACATCAACAGGATAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAAc                                                                                                                                                      <  2:411449/151‑1 (MQ=255)
      gacaactgtcggaaccTGGAACAGCATCAGGATACTGCGGAAGCAGCACAACAGGCCGATCCCCGCAAAGCCGCCGTGGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAgg                                                                                                                                                   <  1:614821/136‑1 (MQ=14)
      cacAAAGCGCGCAAGCTGGAACAGCAACAGGATAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAgg                                                                                                                                                   <  8:269115/149‑1 (MQ=255)
       ccAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAGCAGGt                                                                                                                                                  <  8:669171/151‑1 (MQ=255)
       ccAAAGCGCGCAAGCTGGAACACCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGt                                                                                                                                                  <  2:357942/151‑1 (MQ=255)
        cAAAGCGCGCAAGCTGGAACAGCAACAGGCAAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTc                                                                                                                                                 <  2:1181601/151‑1 (MQ=255)
         acaccccgcAATCTGGAACAGCAACAGCATACTGCGGAACCAGAACAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCg                                                                                                                                                <  2:1246076/145‑1 (MQ=14)
         aaaaggcgcAACCTGGAAGATCATCAGCATAATTCCGAACCAGAACAAGTGGGCGATCCTCGCAAAGCCGCCGTGGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCg                                                                                                                                                <  7:1312016/146‑1 (MQ=14)
         aaaGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCg                                                                                                                                                <  2:523627/151‑1 (MQ=40)
              gcgcAATCTGGAACATCATCAGGATAATGAGGAAGCAGAACCAGTTGGCGATCCTCGCAAATCTGCCGTTGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑Ccg                                                                                                                                          <  1:788787/151‑1 (MQ=14)
              gcgcAAGCTGGAACACCAACAGGATAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑Ccg                                                                                                                                          <  8:1085290/151‑1 (MQ=255)
               tgctatcTGGAAGATCATCAGGATAATTACGAAGCAGAAAAAGTTGTTGATCCTCGTAAATCTGCCGTTGAAGCAGCTATCGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑cc                                                                                                                                           <  3:103404/143‑1 (MQ=11)
                gcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTAGCAGCCGCTATTGCCCGGGCGCAAGCGCGCAAGCGGGCACAGCACCAGGCTCATGCGGATCCAGAAGAGCAGGTCGCT‑Ccgcc                                                                                                                                        >  8:1085700/1‑150 (MQ=14)
                gcAAGCTGGAACAGCAACAGGATAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCACAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑Ccgcg                                                                                                                                        <  8:719716/151‑1 (MQ=255)
                gcAAGCTGGAACACCAACAGGATAATGAGGAACCAGAACAACAGGTCGATCCTCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑Ccgcg                                                                                                                                        <  6:1468396/151‑1 (MQ=14)
                  aaGCTGGAACGGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGAACGTGCCAAAGCGCGCAAGCTGGAACAGCAAAAGGCTAATGCGGACCCAGAAGAACAGGTAGAT‑CCgcgc                                                                                                                                       >  4:588200/1‑150 (MQ=14)
                    acaggAACACCTACAGCATAATGCGGAACCAGAACCAGATGTCGATCCTCGTAAATCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCaaa                                                                                                                                    <  3:1111927/148‑1 (MQ=14)
                       ggAACACCACCAGGATAATGCGGACGCAGCAACACTGGGCGATCCTCGGAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAg                                                                                                                                   <  7:417325/149‑1 (MQ=14)
                        gAACAGCAACAGGATAATGCGGAACCAGCACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAgccg                                                                                                                                <  8:1235490/151‑1 (MQ=255)
                         aagatcatcAGGATACTTCGGAACCAGAACAAGATGTTGATCCGCGTAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAgccgc                                                                                                                               <  1:887560/143‑1 (MQ=14)
                         aaCATCAACAGGCTAATGCGTTTCCATACTATCAGCTCTATCGTTGTAAAGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAT‑CCGCGCAAAgcgg                                                                                                                                <  4:1278255/150‑3 (MQ=14)
                             ccAACAGGATAATCCGGAACCAGAACACCATGTCGATCTTCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTc                                                                                                                           <  1:291949/150‑1 (MQ=14)
                              cAACAGGATACTGAGGAACCAGAACAACTTGGCGATCCTCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCg                                                                                                                          <  1:552776/151‑1 (MQ=14)
                                aCAGGCTAATGCGGAAGCAGAACAAGAGGTCGATCCGCGGAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCg                                                                                                                          <  4:1313982/149‑1 (MQ=255)
                                   ggatAATACGGAAGCAGAAACACATGAAGATCCTCGAAAAACCGCCGTAGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGcc                                                                                                                     <  5:372192/148‑1 (MQ=11)
                                   ggCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGcc                                                                                                                     <  5:923852/151‑1 (MQ=40)
                                     cTAATGCGGAACCAGAACAACAGGTCGATCCGAGCAAAGCAGCCGTCGAAGCCGCTATTGACCGAGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGCT‑CCGCGCGCGGCCGCGGTCgcggcggc                                                                                                                   >  2:63072/1‑144 (MQ=14)
                                       actGCCGAACCAGAACCCGATGTTGATCCTCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTa                                                                                                                 <  5:1304360/149‑1 (MQ=14)
                                         acacgacccAGCACCAGAGGCCGATCCACGGAAAGCCGCCGTCGAAGCCGCTATCGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGATAATGCCGACCCAGAACAACAGGGCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTAtt                                                                                                               <  5:464512/144‑1 (MQ=11)
                                          gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAACCTCGAACAGCAACAGGCTAATGAGGACCCAGAACAACACGTCGCT‑CCCCGCACAGCCGCAGttgccgcgcctaatg                                                                                                              >  5:805594/1‑137 (MQ=11)
                                          ccGGAACCAGAACCAGAGGGCGATCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTg                                                                                                              <  2:665761/150‑1 (MQ=255)
                                           cGGACCCAGAACCCCAGGTGGATCCCCGCAAAACTGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc                                                                                                             <  8:21048/151‑1 (MQ=14)
                                            ggacgcAGAACCCCAGGATGATCCTCGTAAACCAGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGcc                                                                                                            <  7:671811/146‑1 (MQ=11)
                                               cgcAGAACCACAGGATGATCCTCGAAAAACTGCCGTAGAAGCAGCTATTTCCCGTGAAAAAGCTCGCAAGCTGGAACATCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGt                                                                                                        <  4:376529/149‑1 (MQ=11)
                                               aCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGACCTAGCAAAAGCGGGCAATCTGGAACAGCAACAGGCTAATGCGGAGCAAGAAGAACAGGACGAT‑ACGCGAAAAAAAGACGTCGAAGCGGCTATTGcg‑cgg                                                                                                        >  4:419218/1‑150 (MQ=11)
                                                   gaaccccaGGGCGATCCGCGAAAACCTGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCa                                                                                                    <  2:1188154/145‑1 (MQ=11)
                                                        ggccgacGATCCCCGTAAAGCTGCCGTAGCAGCCGCTATTGCCCGGGCCAAACCGCGGAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGGCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCa                                                                                               <  8:359306/145‑1 (MQ=11)
                                                         cagggggATCCTCGCAAAGCCGCCGGCGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGGCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCAc                                                                                              <  2:960337/145‑1 (MQ=14)
                                                         caGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAACGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGCAGGACAGGTCGAT‑CCGCGCAAAGCCGCCGTTGCCGCGGCTATTGCC‑CGGGcgcaggccc                                                                                              >  6:445083/1‑143 (MQ=11)
                                                          aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGAT‑CCGCGCAACGCCGCCGTGGACGCCGCTATTGCC‑CGGGcgccggcccg                                                                                             >  2:312025/1‑142 (MQ=14)
                                                           ggccGATCCTCGTAAACCAGCCGTTGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACg                                                                                             <  4:26775/147‑1 (MQ=11)
                                                            ggagATCAGCGGAAAGCTGCCGTCGAAGCAGCTATTGCCCGGGCCAAACCGCGCAAGCTGGAACAGCTACAGGATAATGCGGAACCAGAACAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACg                                                                                             <  2:591218/146‑1 (MQ=11)
                                                                 tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGGGCGTGCGGAACCAGAAGCACAGGTAGAT‑CCGCGCAAGGCGGCCGTCGAAGCGGCTATTGCA‑CGAGCCAAAGCACGCCCGCTg                                                                                      >  2:1302135/1‑151 (MQ=11)
                                                                  ccgccaaaaTCCGCCGGCGAAGCAGCTATAGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGCCTAATCCGGAACCAGAACAACAGGGCGAT‑CCGCGCAAATCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACGCAAGCTgg                                                                                     <  7:1150086/145‑1 (MQ=11)
                                                                  ccGCGCAAAGCAGCCGTGTATGCAGCTAAGGCCGGTGCGAAAGCGCGCAATCTGGAACACCTACAGGATAATACGGAACCAGAACCACATGGCGAT‑CCGCGCAAACCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACGCAAGCTg                                                                                      <  2:461940/150‑1 (MQ=11)
                                                                   cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCGATGGGGGCAGCAGAAGACGCGGGGGCT‑CCGCGGAATGCGGCGGTCGAAGCCGCTCTTGCG‑CGTGCCAAAGCACGCACGCgggg                                                                                    >  5:1418852/1‑150 (MQ=9)
                                                                           gcagccgTAGAAGCAGCTATTGCCCGTGCAAAAGCTCGCAAGCTGGAACACCAACAGGCTAATGCGGAACCAGAACAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAAc                                                                            <  6:994299/148‑1 (MQ=11)
                                                                            cggccgGCGTAGCAGCTATTGCCGGGGCCACACCGCGCAAGCTGGAAGACCAACAGGCTAATGCGGACCCAGAACAACAGGCCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACa                                                                           <  6:1356332/149‑1 (MQ=11)
                                                                              gcagtagAAGCAGCTATTTCCCGGGACAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATTCGGAACCAGAAGAACAGGGCGAT‑CCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACa                                                                           <  1:279417/143‑1 (MQ=11)
                                                                              cccgtcgtattttcTATTGCACGTGCCACACCGCTCAAACTGCAACACCAACAGCCTAATTCCGACCCAGAAGCTCA‑TCCGCTCCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCA‑CGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg                                                                         <  1:1422337/138‑1 (MQ=2)
                                                                                 gTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTAGAACAGAACCCGGGAAATGAGGAAAAAGAAGAACAGGTATAT‑CAGAGAAAAGCAGCCGTCGAATACGCTAATAAA‑AGAGCCAAAGCACGCAAGCTGGATCGGCagcgggggg                                                                      >  1:581530/1‑143 (MQ=2)
                                                                                  tCGCAGCGGCTATTGCCCGTGCCAAAGATATAAATCTGTTACTGCAACAGGCTAATGCTGATCCAGAAGAACAGGTGTTT‑CCGCGCAAATCGGTCGTCGTAGCTGCTATTGCA‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt                                                                       <  4:1208988/149‑1 (MQ=2)
                                                                                   cGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAATCTGGAACAGCAACAGGCTAATGCGGATCCAGAAGAACAGGTTGAT‑CCGCGCAAAGCTGCCGTCGAAGcg                                                                                                                     <  4:980123/103‑2 (MQ=11)
                                                                                   cGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTCGAT‑CCGCGCAAAGCTGCCGTCGAAGcg                                                                                                                     >  2:979168/1‑102 (MQ=255)
                                                                                      cgcagCTATTGCCCGGGACTACTCGCGCAAGCTGGAACACCAACAGGCAACTCCGGAACCAGCAAACCTGGGCGAT‑CCCCGCAAACCCGCCGTCGAAGCAGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGc                                                                  <  6:719720/146‑1 (MQ=11)
                                                                                         cGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGCAGAGGAAGAG‑CCGCCCTCAGCAGGCGTCGCACCCGGTCTTCGC‑CGGGCCGCCGGACGCACGCTGGAACATCAACAGGCtcgggcgggg                                                              >  2:95024/1‑142 (MQ=9)
                                                                                          gCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGCACAGGACGAT‑CCGCCCAAAGCACCCGTCGAAGCCGCTATTGCC‑CGCGCCAAAGCACGCAAGCGGGAACAGCAACCGGCTAGTGCGGAgg                                                             >  2:1207746/1‑150 (MQ=11)
                                                                                           cTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCGACTGCCGAACCAGAAGCACAGCTAGAT‑CCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCA‑CGAGCAAAAGCACGCAAGCTGGAACCGCACCAgggggggggcgcgcc                                                            >  2:818913/1‑138 (MQ=14)
                                                                                             aTTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGGCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAg                                                          <  8:472617/151‑1 (MQ=255)
                                                                                                gCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGAT‑CCGCGCAAAGCCGCCGTAGACGCGGCTATTGCC‑CGAGCAAAAGCCCGCAAACACGAACAGCAAACGGCTaagccgcgtcaagagc                                                       >  4:659596/1‑137 (MQ=11)
                                                                                                gCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaa                                                        <  8:1465696/150‑1 (MQ=38)
                                                                                                  ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGAT‑CCGCGCAAAGCGGCAGTAGACGCCGCTATTGCC‑CGAGCACACGCCAACAAACACGCCCAGCAACAGGCTAAAGccagaacagaaga                                                      >  4:701730/1‑139 (MQ=2)
                                                                                                    gTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCCGCGTCGCAGCAGCGTTTGCC‑CGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTACTGcggcggcagcggcccc                                                   >  2:817824/1‑136 (MQ=11)
                                                                                                      tccAAAGCTCGCAATCTGTAAAAGCATCAGTATATAGCTGAACCAGAACAAGATGCTGAT‑CCTCGTAAATCTGCCGTCGAAGCAGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg                                                  <  4:1058030/149‑1 (MQ=2)
                                                                                                      gCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAATCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg                                                  <  8:238295/150‑1 (MQ=255)
                                                                                                       aacaacgcgggaatcTGGAAGATCATCAGGATAATTAGGAAGCAGAACCAGTGGGCGAT‑CCTCGTAAAGCTGCCGTCGAAGCAGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAg                                                          <  7:583580/127‑1 (MQ=2)
                                                                                                        atacagacggaatcaggAACATCAACAGCAAAATCAGGAAGCAGAAAACCATGCGGAT‑CCACGCAAACCCGCCGTCGAAGCAGCTATCGCC‑CGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTc                                               <  6:942590/136‑1 (MQ=2)
                                                                                                         aactgtcccAATCTGGCACATCATCAGGATACTGCGGACGCAGCAAAACTGGTTGAT‑CCTCGCAAATCGGCCGTGGAAGCCGCTATTGCC‑CGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCg                                              <  5:824067/143‑1 (MQ=2)
                                                                                                         aaaGCACGCAAGCTGGAACAGCAACAGGCGAATGCCGAGCCAGAACAACAGGTAGAT‑CCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCC‑CGCGCACAAGCCCAAAAACCCGAACAGCAACAGGATAAAAACGAGCAAGAACAAAAGCTCg                                              >  1:98981/1‑151 (MQ=2)
                                                                                                          aatctcggaatcTGGAAGATCATCAGGATAATCAGGAACCAGAACAAGAGGTTGAT‑CCTCGCAAATCTGCCGTCGAAGCAGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGa                                             <  7:370938/140‑1 (MQ=11)
                                                                                                           atgtgccAATCTGGAAGACCTACAGGAAAATCAGGAACCAGAACACGTTGGCGAT‑CCTCGTAAATCTGCCGTCGAAGCAGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGAt                                            <  3:1061956/145‑1 (MQ=2)
                                                                                                            cgtgctaaGCAGGAAGATCATCAGGCAAATCACGACGCAGCACAACATGGCGAT‑CCACGCAAACCAGCCGTCGAAGCAGCTATAGCC‑CGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATc                                           <  8:414974/145‑1 (MQ=2)
                                                                                                             gtcggaatcTGGAAGAGCTTCAGGATAATCCCGAACCAGCAACCGAGGGGGAT‑CCCCGTAAACCGGCCGTCGAAGCAGCTATTGCC‑CGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATc                                           <  8:1332779/142‑1 (MQ=2)
                                                                                                               cgcAAGCTGGAACAACAACAGGATAATCCGGAACCAGAACAAGAGGTCGAT‑CCGCGTAAACCAGCCGTCGAAGCAGCTATTGCC‑CGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc                                        <  5:75959/151‑1 (MQ=11)
                                                                                                                gcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGAGCCAAAGCACAAAAGAAGAAACACCAAAAGGCAAATACAGAACCAGAaaaacaagaacaacctcg                                       >  7:529542/1‑139 (MQ=11)
                                                                                                                    tatttaaCACCAACAGGATAATCCTGAACCAGAATAACAGGTCCAT‑CCTCTCAAATCAGGAGTCGAATCCGATCTTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCaa                                    <  3:1230343/145‑1 (MQ=14)
                                                                                                                      tGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGAT‑CCGCGCAAAGCGGCAGTAGCCGCGGCTATTGCC‑CGCGCACAGGCCCGCAACCGCGCCCAGCAGCAGGGTGAAGCCGAGCCAGAAAACCAGGTcccaaaacccaacgc                                 >  6:480999/1‑137 (MQ=2)
                                                                                                                       tgatctgttaCAGGATAATTACGAAGCAGAACAAGTTGTCGAT‑CCTCGCAAACCCGCCGTCGAAGCAGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAgc                                 <  7:253573/141‑1 (MQ=11)
                                                                                                                       gtaacacgaaCAGGATAATTAGGAACCAGAACAAGAGGCGGAT‑CCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAg                                  <  2:31051/141‑1 (MQ=11)
                                                                                                                       ggAAGATCATCAGGATAATTAGGAAGCAGAATAAGATGTTGAT‑CCTCGCAAATCTGCCGTCGAAGCAGCTATTGCC‑CGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCaa                                    <  1:1168113/147‑1 (MQ=11)
                                                                                                                       ggAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGAT‑CCGCGCAAAGCCGAGATCGGAACAGCGAAGTCG‑AGTGACAAAGAACACACGATAGTAGAGCAAAAGGAGAAAGCCGAACCAGAAAAAAAATTCGATCCgcgcgcggcc                                >  7:935164/1‑145 (MQ=2)
                                                                                                                        caaCAGCAACAGGCTAATGCTGATACATACCAACAGCTCCAG‑CCTCGCCACCCCGCATTCGCTGACTGTATTGCA‑CCCGCGTCAGCTCGCCATCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAgccg                               <  6:930254/150‑1 (MQ=2)
                                                                                                                         aaCACCAACAGGCTAAGCCTGAACGAGCAGCTTAGGTGCTT‑CCTCGTAAACCTGCCGTGGAAGCAGCTATTGCC‑CGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAgccg                               <  4:366039/150‑1 (MQ=2)
                                                                                                                             gCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGAT‑CCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCC‑CGAGCAAAAGCCAGCAACCACGAACAGCAACAGGATAATGACGAGCCCGAAAAGCAGGTCGAAACCCGAAAAgccgcaga                           >  4:254439/1‑147 (MQ=2)
                                                                                                                             ccatcagcatAATGAGGAAGCAGCACAAGAGGGTGAT‑CCTCGCAAACCGGCCGTCGAAGCAGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGC‑CGTc                         <  2:1276253/142‑1 (MQ=11)
                                                                                                                             ccAACAGGATACTCCCGACCCAGCACAACTGGCTGAT‑CCCCGCAAACCTGCCGTCGAAGCCGCTATTGCC‑CGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCGAGAACAACAGGTCGATCCGCGCAAAGCCGC‑CGTc                         <  3:1462311/150‑1 (MQ=11)
                                                                                                                              cAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGATAATGCCACGTCGGAACGC‑CACACCCGGGAACCGCAACCGGCTACTGCCGAGCCAGAACAACAGCTAGATCCGCGCAGcgccgcgggcg                         >  2:781412/1‑146 (MQ=9)
                                                                                                                               aaCAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCGGCAGTCGAAGCGGCTATTGCC‑CGAGCGAAGGCACGCAAGCGCGACCAGCAACAGGCTTATGACGATCCAGAACAACAGGTCGATCGCCGCACAgccgcatatgc                        >  8:833314/1‑145 (MQ=14)
                                                                                                                                 cAGGCTAATGCGGAACCAGAAGAACAGGTAGAT‑CCGCGCAAAGCGGCAGACAACGCAACAAATTCC‑AGTACCGAAACACTCAAGCGGGAACAGAAACACTCTAATGACGACCGAGAAGAAAAACAAGATCCGCGCAAAgcggcgggggtcg                      >  7:606643/1‑143 (MQ=2)
                                                                                                                                      aaaTGAGGAACCAGAAGAAGAGGGCGAT‑CCACGTAAAACTGCCGTAGAAGCCGCTATAGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGC‑CGTCGAAGCCGCt                <  2:1268493/150‑1 (MQ=14)
                                                                                                                                         tGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCC‑CGAGCCAAAGCAAGCAAGCTGGAACAGCAACAGGCTAATGACGAGCCAGAAGAACAGGTAGATCCGCGCAAAGCCGC‑CGTCGAAGACGCTAtt             >  4:1076042/1‑151 (MQ=11)
                                                                                                                                           cGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCGGCAGTAGAAGCGGCTATTGCC‑CGAGCCAAAGCAAGCAAGCAGGAACAGCACCAGGATAATGCCGAGCCAGAACAACAGGTAGATCAGCGAAAAGCCGC‑AGTAGAAGCGGATATTGc           >  4:1397369/1‑151 (MQ=14)
                                                                                                                                             gAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTAGCAGCCGCTATTGCC‑CGCGCAAAAGCCAGCAAACACGAACAGCAACAGGCTAAAACCGAGCCCGAAAAACAAGTCAATCACCGCAAAGCGGC‑AGTAGCCGCAGCAATTGccc         >  7:1151909/1‑151 (MQ=2)
                                                                                                                                                 cAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGAGCCAACGCAAGCAAGCGGGACCAGCAACAGGGTCATGCCGAGCCCGAACACCAGGTCGCTACGAGCAAAGACGC‑CGTCGCCGCGGCTATTGCCCGAGc     >  8:259044/1‑151 (MQ=14)
                                                                                                                                                 cAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTAGAAGCGGCTATTGCC‑CGAGCGAAAGCACGCAAGCGCGCACAGCAACAGGCTAATGACGAGCCAGAACAACAGGTCGCTCAGCGAAAAGCCGC‑AGTAGCACCGGCTATTCCCCgcgc     >  3:917185/1‑151 (MQ=14)
                                                                                                                                                    cagaagaGGGCGAT‑CCACGTAAAACTGCGGGAGACGCGGCTATAGGC‑CTGGCCTAAGGACGTAAGCTGGAACAGCAACAGGATAATGCCGACGCAGAACACCAGGGCGATCCGCGCAAAGCCGC‑CGTCGAAGCCGCTATTGCCCGAGCCaa  <  6:965751/150‑1 (MQ=2)
                                                                                                                                                     agaaCAGGTCGAT‑CCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCC‑CGAGCTAAAGCACCCAAGGGGGAACAGCATCAGGCTATTGCCGAGGCAGATCAACAGGATGATCCGCGCAAACCCACTCGT‑GAAGCGGCTAGTGCCCgctccc   >  6:1346087/1‑144 (MQ=2)
                                                                                                                                                      |                                                                                                                                                       
GCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCC‑CGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGC‑CGTCGAAGCCGCTATTGCCCGAGCCAA  >  NC_000913/1708608‑1708906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑