New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2357873	287 (0.600)	48 (0.100)	34/300	37.3	14.1%	pseudogene (70/198 nt)	ypaA	pseudogene, C‑terminal fragment, Transposase_31 family
	?	NC_000913	2357886 =	298 (0.620)					pseudogene (83/198 nt)	ypaA	pseudogene, C‑terminal fragment, Transposase_31 family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

CTATTGCTGAACGGCTGCGGCAGGAAGGACATCAAATTGGCTGGCAGGAAGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2357820‑2357873 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAACCACTAATTAACACAGGCCCACAGCCGATCCCCATGGGCCT  >  NC_000913/2357886‑2358035                                                                                                                                                                                                              CTATTGCTGAACGGCTACGGCAGGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGATCGTGACCATGTGCTCGCGGCCACCCAGCTCACCGAAGCCGATat                                                       >  6:639388/1‑149  TATTGCTGAACGGCTACGGCAGGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGNTGNAGCNGGGNTTTGATCGTGACCATGTNCTCGNGCCCCCCNACCNAACCGNAGCGGAna                                                        >  4:1796853/1‑147     TGCTGAACGGCTACGGCAGGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGAGCATTCTTGAGCACGGCTTTGAACGTGACAATGTGCTGGCGCACACCCACCTAACCGAAGACGATATGGa                                                    >  2:372352/1‑149         GAACGGCTACGGCAGGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGAACGTGACATTGTGCTCGCGGCCACCCAGCTAAGCGAAGCGGATCTTGCAGCG                                                >  7:110370/1‑150         GAACGGCTACGGCAGGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGACCAGGGCTTTGAACGTGACAAGGTGCTGGCGCCCACCCAGCTAAGCGAAGCCGATATGACAtcct                                               >  4:1297268/1‑147          AACGGCTACGGCAGGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGATCGTGACAATGTGCTCGCGCCCACCCAGCTAAGCGAAGCGGATCTGGCAGCGA                                               >  7:15688/1‑150           ACGGCTACGGCAGGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGATCGTGACAATGTGCTCGCGGCCACCCAGCTCAGCGAAGCGGATATGGCAGCGAAT                                             >  5:1808865/1‑151             GGCTACGGCAGGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGAACGTGACAATGTGCTCGCGCCAACCCACCTAACCGAAGCCGATATGGCAGCCAATc                                            >  8:68689/1‑149               ctaCGGCAGGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGAACGTGACAAGGTGCTCGCGGCCACCCACCTAACAGAAGCGGATCTGGAAGCCAATcagc                                         >  3:411977/4‑147                taCGGCAGGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGATCGTGACAATGTGCTGGCGGCCACCCACCTCAGCGAAGCCGATCTGGCAGCGAATcagg                                         >  6:1148715/3‑146                  CGGCAGGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGAACGTGACAATGTGCTCGCGCCCACCCACCTCACCGAAGCCGATCTGGCAGAGAATAACCACT                                      >  1:1884059/1‑151                      attatgggctTCAATTTGGCTCTCTTGAAGGTTTGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAACCACTAATT                                  <  2:1881687/141‑1                      AGGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGATCGTGACAATGTGCTCGCGGCCACCCAGCTAAGCGAAGCGGATATGGCAGCGAATAAGGACTAGTT                                  >  6:547420/1‑151                       GGAAGGGCATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGAACGTGACAATGTGCTCGCGCCCACCCACCTAAGCGAAGCGGATATGGCAGCCAATAAGCAATAATT                                  >  2:1452965/1‑150                        GAAGGGCATCATATTGGCTGCCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAACCACTAATTA                                 <  5:639188/150‑1                          AGGGCATCAATTAGGCTTCCACGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAACCACTAATTAACA                              <  5:547608/151‑1                               ATCAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGACCAGGGCTTTGATCGTGACCATGTGCTCG                                                                                   >  6:459644/1‑93                                 CAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCATGTGCTCGCGGCCACCCAGCTAAGCGAAGCGGATCTGGCAGCGAATAAGCACTATTATACACAGtac                        >  1:586990/1‑147                                 CAAATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACAAGGTGCTCGCGGCCAACCACCTAAGCGAAGCCGATCTGGCAGCGAATAACCACTAA                                    >  2:808349/1‑138                                   AATTGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTTGCAGCGAATAAGCACTAGTTAACACAGGCCaa                      >  7:1444095/1‑148                                    catcctatctatGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAACCACTAATTAACACAGGCCCACA                    <  6:382191/139‑1                                      TGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGATCGTGACCATGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAA                                           >  1:1507094/1‑126                                      TGGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCATGTGCTCGCGGCCACCCAGCTAAGCGAAGCGGATATGGCGCACAATAACAAATAATTAACACAACACCACAGC                  >  4:585126/1‑151                                       GGCTGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGAACGTGACCATGTGCTCGCGCCCACCCAGCTAAGAGAAGCCGATATGGCACCCACTAAAAAATAATAAACACACGCGAACAGac                 >  1:654817/1‑149                                          TGGCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGAACGTGACAATGTGCTCGCGGCCACCCAGCTAAGCGAAGCGGATCTTGCGGCGAGTAAGCAATAATTAACACAGGCCCACAGACGAT              >  1:363294/1‑151                                           GGCATGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGC                                                             <  3:900317/103‑1                                            GCAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGACCAGGGCTTTGAACGTGACCATGTGCTCGCGCCCACCCAGCTCAGCGAAGCCGATCTGCCCGCCAATCACGACTAATAAACACACACCCACAagcacgg             >  6:762591/1‑143                                             CAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCATGTGCTCGCGGCCACCCAGCTAAGa                                                                  >  3:13926/1‑95                                             CAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTC                                                                                    <  6:1146401/78‑1                                             CAGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTC                                                                                    >  5:1145472/1‑78                                              AGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTCAGGGAAGCGGATATGGCGCCGAGTAAGCACTAGTTCACACACGCCAACATCCGATCCCC          >  1:279180/1‑151                                              AGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCA                                                                             >  6:1085488/1‑84                                              AGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGACCAGGGCTTTGATCGTGACAAGGTGCTCGCGGCCA                                                                             >  1:1184875/1‑84                                              AGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGAGCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAAGCACTAAGTAACAAAGGCCCACATACGATCCCC          >  8:1489899/1‑151                                              AGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTTGCAGCGAATAAGCACTAATTAACACAGGACCACAGCCGATCACC          >  5:169951/1‑151                                              AGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTTGCAGCGAATAACAAATAATAAACACAtcccaaca                    >  5:382084/1‑133                                              AGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCA                                                                             <  5:1084646/84‑1                                              AGGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCA                                                                             <  2:1182585/84‑1                                               GGAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGATCGTGACAAGGTGCTCGCGGCAACCCAGCTAAGCGAAGCAGATATGGCTGCGAGTCAGCACTACTTAACACAGGCCAACAtaccatcaccc         >  4:1586377/1‑140                                                GAAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACAATGTGCTCGCGGCCACCCAGCTAAGAGAAGCCGATCTGGCAGCGAATAAGGAATAATTAACACAGGACCAGAGACGATCCCC          >  3:833483/1‑149                                                 AAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAACCACTAATTAACACAGGCCCACAGCCGATCCCCATG       <  4:412253/151‑1                                                 AAGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACAATGTGCTCGCGGCCACCCAGCTAACCGAAGCAGATCTGCCAGAGAATAAAAAATAATTAACACAGAACAACAGACGATaacca         >  3:1518115/1‑144                                                  AGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAACC                                         >  2:1147336/1‑116                                                  AGGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAACC                                         <  1:1149555/116‑1                                                   GGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAACCACTAATTAACACAGGCGAACATCCCATCCCCATGGG     >  2:260511/1‑151                                                   GGTATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAACCACTAATTAACACAGGCCCACAGCCGATCCCCATGGG     <  2:585979/151‑1                                                     TATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCT                                                                                     >  8:1403517/1‑69                                                      ATGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAGCAGGGCTTTGAACGTGAGAATGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCCGCGAGTAACCACTAATTAACACAGGACCCCAGCGCATACCCATGGGCCg  >  1:282541/1‑150                                                                                                                                                                                                              CTATTGCTGAACGGCTGCGGCAGGAAGGACATCAAATTGGCTGGCAGGAAGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2357820‑2357873 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCATGAACAAGCCATTAAAATTGCTTTGCGCATGCTGGAACAGGGCTTTGATCGTGACCAGGTGCTCGCGGCCACCCAGCTAAGCGAAGCCGATCTGGCAGCGAATAACCACTAATTAACACAGGCCCACAGCCGATCCCCATGGGCCT  >  NC_000913/2357886‑2358035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.