Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,708,7580GC25.5% 166.4 / 41.3 154E614Q (GAA→CAA) rsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base G (42/66);  new base C (6/31);  total (49/105)
Fisher's exact test for biased strand distribution p-value = 1.45e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 158 total aligned reads displayed.

CCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCC  >  NC_000913/1708609‑1708904
                                                                                                                                                     |                                                                                                                                                  
cccGCGACAAAGCGCGCAAGCTGGAACAGCTACAGGATAATGCGGAACCAGAACAACAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaaga                                                                                                                                                   <  7:1842546/151‑1 (MQ=255)
    cgcCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAg                                                                                                                                               <  6:1815358/151‑1 (MQ=40)
       aaaatctcggaatcTGGAAGAGCAACAGGCTAATGCGGAACCAGAACAAGAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTc                                                                                                                                            <  8:1609140/138‑1 (MQ=14)
       aaaaCCGCGCAAGCTGGAACAGCAACAGGCTAATCCGGAAGCAGAACAACTGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTc                                                                                                                                            <  4:1754049/150‑1 (MQ=255)
        aaatctcggaaGCTGGAACATCATCAGGATAATGCGGAAGCAGAACAAGATGGTGATCCTCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCg                                                                                                                                           <  8:910521/142‑1 (MQ=14)
        aaacgtcgcAAGCTGGAACATCAACAGGATAATCAGGAACCAGAACAACATGTCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCg                                                                                                                                           <  6:1117092/145‑1 (MQ=14)
         aaccccggaaGCTGGAACAGCAACAGGATAATGCGGAACCAGAACAAGAGGTCGATCCTCGCAAATCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTc                                                                                                                                            <  1:371332/141‑1 (MQ=14)
          accgcgcAAGCTGGAACAGCAACAGGATAATGCGGAACCAGAACACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAt                                                                                                                                         <  2:1318140/149‑1 (MQ=255)
           gcgcgcAAGCTGGAACACCACCAGGCTAATGCGGAACCAGAACAACATGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCTAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATc                                                                                                                                        <  5:143759/151‑1 (MQ=255)
           ccgcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATc                                                                                                                                        <  7:609658/150‑1 (MQ=40)
              cggaatcTGGAACATCAACAGGATAATCCGGAAGCAGAACAACTGGGCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCcgc                                                                                                                                     <  7:1156545/145‑1 (MQ=14)
              cgcAATCTGGAACACCTTCAGCATAATCCGGAACCAGAACAACAGGTCGATCCGCGCAAATCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAt                                                                                                                                         <  2:387003/147‑1 (MQ=14)
               gaaatcTGGAACATCAACAGCATAATCAGGAAGCAGAACCCCATGTAGATCCTCGTAAACCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCcgc                                                                                                                                     <  3:653810/145‑1 (MQ=14)
                  aGCTGGAACAGCATCAGGCTAATGCGGAACCAGAACCACTGGGCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCaa                                                                                                                                 <  1:481083/151‑1 (MQ=14)
                  aGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGAGCCAAAGCCAACAAACACGAACAGCAACAATCTAATGCGCATCCAGAAGAACAGGAAGATCCGCCCa                                                                                                                                  >  8:76172/1‑150 (MQ=11)
                   acTGGAAGACCATCAGGATAATCCCGACCCAGAAAACGATGCTGATCCTCGTAAACCTGCCGTCGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCaaa                                                                                                                                <  5:1705845/150‑1 (MQ=14)
                      ggAAGATCATCAGGCTAATCCGGACCCAGAACCACAGGTCGATCCCCGCAAACCAGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcc                                                                                                                             <  3:1829842/151‑1 (MQ=14)
                      ggAACAGCAACAGGCTAATGCTGAACCAGCACACCAGGTCGATCCGCGGAAAGCCGCCGTGGAAGCCGCTATTGCCCGTGCCAAAGCGCGGAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAccc                                                                                                                             <  4:642213/151‑1 (MQ=14)
                      ggAACAGCAACAGGCTAATGCGGAACCAGAACAACATGGCGATCCCCGGAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgc                                                                                                                              <  7:1609081/150‑1 (MQ=255)
                      ggAACACCACCAGGCTAATGCGGAACCAGAACCCCAGGGCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcc                                                                                                                             <  4:1345363/151‑1 (MQ=14)
                        ataagatagatgttAATGCGTAACCAGAAAAAGTTGTGGATCCGCGGAAAGCAGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgc                                                                                                                           <  7:657745/138‑1 (MQ=14)
                         acacCAACAGGATAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgcc                                                                                                                          <  8:1219372/151‑1 (MQ=255)
                         acacCAACAGGATAATGCCGAAGCAGAACACCAGGCCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgcc                                                                                                                          <  4:599072/151‑1 (MQ=14)
                         aCAGCAACAGGCAAACCCGGACCCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgcc                                                                                                                          <  7:1642505/151‑1 (MQ=14)
                          aatcAACAGTATAATGCGGAACCAGAAACACTGGTCGATCCTCGTAAAGCATCCGTCGAAGCCGATATTGCCCGTGACAAAGCGCGCAAGCTGGAAAAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGccgccg                                                                                                                         <  4:730703/148‑1 (MQ=14)
                            ccAACAGGATAATCCGGAACCAGAACCAGATGGCGATCCTCGCAAAGCCGCCGTCGAAGCAGCTATAGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTc                                                                                                                       <  1:624515/150‑1 (MQ=14)
                             cAACAGGCTACTCAGGAACCAGAAAAACAGGGCGATCCGCGCAAACCAGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCg                                                                                                                      <  6:838199/151‑1 (MQ=14)
                             cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAAGCGGAACCAGAACAACAGGTCCATCCGCGCAAAGACGCCCTCg                                                                                                                      >  7:111100/1‑151 (MQ=255)
                               tcAGGATAATTAGGAAGCAGAAAAAGATGTTGATCCTCGTAAATCTGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTc                                                                                                                       <  8:386808/147‑1 (MQ=11)
                                  gcctacttacgacgcAGAACCACAGGTTGATCCTCGAAAATCTGCCGTAGAAGAAGCTATTTACCGGGCCAAATCGCGCAAGCTGGAACAGCAACAGGATAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc                                                                                                                 <  8:293692/137‑1 (MQ=2)
                                   gataattaggAAGCAGAACCCGAGGCCGATCCTCGTAAATCAGCCGTTGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCg                                                                                                                <  8:309071/143‑1 (MQ=11)
                                   ccaactcacgacccAGAACCACAGGCCGATCCTCGCAAACCAGCCGTAGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCg                                                                                                                <  2:1289017/139‑1 (MQ=14)
                                      aattccgaaccagaaccaCAGGCTGATCCTCGAAAAACTGCCGTAGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa                                                                                                             <  8:1125985/145‑1 (MQ=11)
                                      aaTGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCAGAACTCAAAACCGAAATTTACCGAAACAAAGAGCCAAAAATTGAACATCAACATGCTAAACCTAACAAAAAAAAAAAAGTCGATCCGCGCAAAgccgcgggggggggcgggg                                                                                                             >  2:1557893/1‑137 (MQ=255)
                                      aaTGCGGAACCAGAACAACAGGTCGATCCGAGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGAGACAAAGCGCGCAAGCGGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCGGAGGCGCCGTCgtcggcgctc                                                                                                             >  6:568100/1‑142 (MQ=11)
                                       aTGAGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAt                                                                                                            <  1:503957/151‑1 (MQ=255)
                                         gccgacccAGCACACCTGGGCGATCCCCGGAAACCGGCCGGCGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAtt                                                                                                           <  1:1183682/144‑1 (MQ=11)
                                         gaggaagcatcacaacaTGTCGATCCACGTAAAAGTGCCGTAGATGCCGCTATTGCCCGTGCATAATCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAAGAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTg                                                                                                          <  1:1782092/140‑1 (MQ=11)
                                         gaggAACCATAACACGATGCCTATCCCCGTAAACCAGCCGTTGAAGCTGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTAt                                                                                                            <  2:1717838/147‑1 (MQ=11)
                                         cccgAACCAGAAAAACATGTCGATCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAtt                                                                                                           <  5:299588/147‑1 (MQ=255)
                                           ggAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACCGGCTAATGCGGACCCAGAAGAACAGGTCGCTCAGCGCAAAGCCGCCGTCGAAGCCGCTATTGcc                                                                                                        >  7:1068179/1‑151 (MQ=255)
                                                cAGAACCACAGGATGATCCTCGAAAACCAGCCGGAGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGc                                                                                                   <  7:1460407/151‑1 (MQ=11)
                                                cAGAACAACAGGTCGATCCGCGCAAAGACGCAATCGACTCCTCTATTGCAAGAGACAAAGCGCGCAAGCTGCAAAAGCAACAGGCTAATGCATAAAAAGAAGAACAGGTAGATCCGCGCAAGGGCGGCGGCGCGGCGGGTTTTGCCCgagg                                                                                                   >  3:400491/1‑148 (MQ=2)
                                                 aGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACAGCACAAAACACCCAAGAGGAAACAGAAACAGTCGAATGAGGAGGAAGAAGAACAGGTCGATCAGCGAAAAGAAAAAGTCGAAGCGGCTATTGCCCggggc                                                                                                  >  5:893851/1‑147 (MQ=2)
                                                    agaacaGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGCGCAAAAGAGCTCAAGCTGGAACAGAAAAAGGCTAATGCGGGCCCAGAAGAAGAGCTAGATCCGCTCAAAGAAGCAGTAGAAGAAGCTATTGCCCgcgcgc                                                                                                 >  5:1632094/3‑147 (MQ=2)
                                                     caccaggcggATCCGCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAg                                                                                              <  4:32438/142‑1 (MQ=14)
                                                      ccccggccGATCCCCGCAAACCTGCCTTTGAAGCCGCTATAGCCCGTGCCAAAGCGAGCAAGCTGCAACTGCAACAGGCTTCTGCGGATCCCGAAGAAGAGGGGGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGc                                                                                             <  4:1845764/144‑1 (MQ=2)
                                                              gATCCTCGAAAACGCGCCGGCGACGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATCCGGAACCAGAACAACAGGTCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCaa                                                                                       <  2:836488/149‑1 (MQ=11)
                                                               aTCCTCGAAAACCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCt                                                                                    <  6:1529673/151‑1 (MQ=255)
                                                                 ccccgcAAATCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTg                                                                                   <  5:1869541/147‑1 (MQ=255)
                                                                 ccGCGAAAGGCGGACGTAGAAGCCGCTATGCCACCTGCCACCCCGCGCAATCTGGAACACCAACAGGATAATGCGGAAGCAGAAGAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTgg                                                                                  <  1:1308547/151‑1 (MQ=14)
                                                                   gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACCGTCTAATGCGGAGCCAGAAGAACAGGTGGATCAGCGCAAAGCAGCCGTCGAAGCCGGTATTGCTAGAGACAAAGCACGCAAGCTGGa                                                                                 >  3:151/1‑150 (MQ=11)
                                                                   gcgaatacctgccgTCGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGATAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa                                                                                <  1:965779/141‑1 (MQ=11)
                                                                    tttaaatcagccgGCGACGCAGCTATTGCCCCGTCCAACGCCCGCAATGTGGAACATCTACAGGCTACTGCGCTAGCAGAACCACAGGCCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa                                                                                 <  8:1090746/140‑1 (MQ=2)
                                                                     gcAAACCCGCCGTCGAATCTTTTTTCCCCCGTCCCACAGCGCTCAAGCTGGACCATCAAGAGTCTACTGCCGAAGCAGAATATCCCGTCGATCCCCGCAAACCAGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACa                                                                              <  4:106912/151‑1 (MQ=2)
                                                                     gaaaaCCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACa                                                                              <  1:677921/149‑1 (MQ=255)
                                                                       aaaacggccgTCGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATCCGGAACCAGAAGCACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGc                                                                            <  4:1275321/145‑1 (MQ=11)
                                                                       aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGCCGCCGGGAGTGCCCGGGCCACAGCTCGCAAGCTggcagcgc                                                                            >  6:255454/1‑145 (MQ=11)
                                                                        aaccagccgTCGCAGCCGCTATTGCCCGGGCAAACGGGCGGAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa                                                                           <  7:456672/146‑1 (MQ=11)
                                                                           cgggcgTGGAAGCCGCTATTCCCCGGGCAAAACCGCGGAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACa                                                                        <  7:1469512/147‑1 (MQ=11)
                                                                             gccgTCGAAGCCGCTATGGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg                                                                      <  1:1794617/151‑1 (MQ=255)
                                                                             cgcggggaccccGCTATAGCCCCGGCCCAAGCGCGCAAGCTGGAACAGCAACAGCCTAATCCGGAACCAGAACACCAGGCCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAgg                                                                      <  6:1356222/141‑1 (MQ=11)
                                                                              ccgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATCGGGAAAGAGAAGAACAGTTAGCTCCGCTCAAAGAAGACGACGAAGCAGCTATTGCGCGGGGGGAAGCAAGCAAGCTGGCACCGCagccggg                                                                     >  1:408531/1‑145 (MQ=9)
                                                                               cgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTGAAAACGCAAAACCCTCCCGTAGAATCAGCTATTGCACGAAGCAAAGCAAGAAAGCGGGAACAGCAACatta                                                                     >  5:59867/1‑147 (MQ=2)
                                                                                   gAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTTGCAGCGGCTATTGCCCGCGCGAACGCCAGCAAGCGCGCCCAGCACCAGGCTGAtt                                                                >  4:882177/1‑150 (MQ=11)
                                                                                     aGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGACGCGGCTATTGCCCGAGCGAAAGCCAGAAAGCACGACCAGCAGAAGGCTGAtcac                                                              >  3:1338694/1‑148 (MQ=11)
                                                                                      gCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTGGATCCGCGCAAAGCCGCCGTGGCCGCGGCTATTGCCCGCGCGAACGCGCGCAAGCTCGGACCGGAACAGGcgactccgg                                                             >  6:1601136/1‑143 (MQ=11)
                                                                                       ccGCGATAGCCCGCGCCAACCCCCCGAACCAGGCACACCAACAGCCTACTGCGGACCCAGCACAACAGGGCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATGGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa                                                            <  6:1613541/151‑1 (MQ=2)
                                                                                           caTTGCCCGGCCCAAACCGCGGAAGCAGGAAGACCAACAGCCTAATCCGGAACCAGCACCACATGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCa                                                        <  7:191276/150‑1 (MQ=11)
                                                                                              tGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCAGCCGTCGAAGCGGCTATTGCACgc                                                                                                     >  5:69882/1‑102 (MQ=11)
                                                                                               gCCCGGCCCACACCGCGCAAGCTGGAACACCAACAGGCTAATGCGGAACCAGCACCCCAGGGCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaa                                                     <  7:759987/150‑1 (MQ=11)
                                                                                                 ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTAGCCGCGGCTATTGCCCGAGCGCAGGCCAGCAAGCCGGCCCAGCAGCAGGGTCTTCACGAGCCCGaactg                                                  >  6:1482492/1‑149 (MQ=2)
                                                                                                   gTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAGCCGCCGTCGCCGCCGCTATTGCCCGAGCCAAGGCCCGCAAGCGCGCACAGCAACAGGCTAATGCCGAGCCCGaacaac                                                 >  7:303481/1‑150 (MQ=14)
                                                                                                   gTGACAAAGGGGGGAAGCTGGAACACCAACAGGCTAATCAGGAACCAGAAAAACAGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAacaaca                                                <  6:1222560/151‑1 (MQ=14)
                                                                                                     gCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAgg                                              <  4:1573181/151‑1 (MQ=25)
                                                                                                      ccAAAGCGCGCAAGCTGGAACAGCAACAGTATACTCCGGAACCAGCACAAGAGGGCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGt                                             <  7:1301021/151‑1 (MQ=11)
                                                                                                       acaatgtcggaaGCTGGAAGATCTACAGGATAATCAGGAAGCAGAACAAGATGGCGATCCCCGCAAATCCGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTc                                            <  1:244833/141‑1 (MQ=11)
                                                                                                        aaaTCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCg                                           <  8:1683465/151‑1 (MQ=255)
                                                                                                        aaaGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCCGTAGAAGCCGCTATTGCCCGAGCAAAAGCCAGCAAACACGAACAGCACAAGGATAAAGACGAGCCAGaaaaagaattcc                                           >  3:937388/1‑144 (MQ=11)
                                                                                                         aaccgcgcAAGCTGGAACACCAACAGGATAATCCGGAACCAGAACACCAGGTCGATCCCCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGa                                          <  6:1221675/148‑1 (MQ=11)
                                                                                                                   gCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGCGCAAAAGCCCGAAAACCCGAACAGCACAAGGATATAGACGAGCAATAaaaacaattacataaaccgaa                                 >  5:540044/1‑135 (MQ=2)
                                                                                                                    cTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGAACATAAGCGCAAAGACGACGTCGAAGCAGCTATTCCACGTGCAAAAGAACGCAAGCTGCAAAAGAAAAAAGATAATGCGGAGCCAGAAGAACAGGTGGGTCCgcgcgtcg                               >  8:81154/1‑147 (MQ=2)
                                                                                                                      ttaaCAGCAACATGCTAATGCTGAAGCAGAACATCAGTTCTATCCGCGGAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAg                               <  2:528033/147‑1 (MQ=11)
                                                                                                                      ggAACAACTACAGGATAATGCCGAAGCAGAAAACGTGGTCGATCCTCGCAAAGCCGCCGTTGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCTGAACAACAGGTCGATCCGCGCATAg                               <  7:522950/149‑1 (MQ=14)
                                                                                                                          cAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCGAAAGCACGCAAACACGAAGCGCAACAGGCTAATGAAGAGCCAGAAGAACAGGTAGATCCGAGCAAAGcggccg                         >  5:1556906/1‑151 (MQ=11)
                                                                                                                            cccccccgCTAAAGCGGAACCAGAACAACAGGTCTTTGCGCGCACAGCCGCCGTGCAACCCGCTATTTCCCGTGCCATAGCTCTGAAGCGTGATCATCATATCGCTAATGCGGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTc                       <  6:359210/144‑1 (MQ=12)
                                                                                                                                cAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCAAAAGCACGCAACCACGAACAGCAACAGGGTAATGCCGACCAAGAACACCATGTCCAACCGCCCAAAGCCGCAGtagccc                   >  8:1467077/1‑146 (MQ=14)
                                                                                                                                  ggCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTCGACCAGCACCAGGCTAAAGCCGAGCCAGAACACCAGGTCGCTCCGCCCAACGcccccgaccccgcc                 >  8:700824/1‑143 (MQ=14)
                                                                                                                                  ggCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAACAGGAACAGCAACAGCCTAATCCCGAGCCAGAACAACAGGTCGCACCGCGAAAAgccccattcgccgc                  >  8:710185/1‑139 (MQ=14)
                                                                                                                                    cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCAAATCCGAAAATCCACGTGGAAAGAAACACAAGCGCGAAAAGAAAAAGTCTAATGCGTAGCCAGAACAAGAAATAAATCAGCGCAAAGCCGCCGTCGGAGcggg               >  5:359031/1‑148 (MQ=2)
                                                                                                                                      aaTGCGGAACCAGAACAACATGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc               <  6:929222/149‑1 (MQ=25)
                                                                                                                                       atcaggAAGCAGAATCCCAGGCTGATCCGCGAAAATCCGCCGTGGAAGCAGCTATGGCCCGCGCCAACGCCCGCAAGCTGGAACAGCAACAGGATAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAt            <  7:986047/147‑1 (MQ=11)
                                                                                                                                        tGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGAGCAAAAGCCAAAAAACAGGAACAGCAACAGGCTAAAGACGAGCAAGAAAAACAAGTAGATCCGATCAAAGCCGACGtggcagagactatt           >  3:685470/1‑138 (MQ=2)
                                                                                                                                           ggAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACCGGCTAATGCCGAGCCAGCACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCGGCTATTGcc        >  8:1686175/1‑151 (MQ=255)
                                                                                                                                           ggAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCGAAAGCCAGAAACCGGGACCAGCACAAGGCTAATGCCGAGCCAGAAGACCAGGTGGATACGCGACAAGCCGACGTAGAAGACTCTATTGcc        >  1:125451/1‑151 (MQ=2)
                                                                                                                                           ggAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGACGACGCAGCAATTCCCCGGGCCAAAGCACTCAAGCTGCAACAGCAACAGGCTAATGCGGAGCCAGAACAAAAGGTCGATCCGCGCCAAGCGGCCGGCGGCGCCggtggggcc        >  7:936827/1‑143 (MQ=11)
                                                                                                                                            gAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGGCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTGGAAGCCGCTATTGccc       >  1:1478506/1‑151 (MQ=255)
                                                                                                                                             aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGATCATCAGAGCAAAGCTGACCTCTCAGCGGCGATTGcgcg      >  7:381479/1‑151 (MQ=11)
                                                                                                                                                cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAACGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTCTTGCCCGAGc   >  7:419564/1‑151 (MQ=255)
                                                                                                                                                   aagaaCAGGTCGATCCGCGCAAAGCCGCAGTGGAAGCCGCTATTGCCCGAGACAAAGCAAGCAAGGAGGAAAAGCAACAGGATAATGCCGATCAAGAACAACAGGTGGATCCGCGCAAATAAGAAGTAGACGCGGCTATTGCCCgcgcg  >  3:243782/1‑148 (MQ=9)
                                                                                                                                                     |                                                                                                                                                  
CCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCC  >  NC_000913/1708609‑1708904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑