BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,552,191	0	C	A	32.8%	811.6 / 148.2	479	intergenic (+200/+207)	fdnI/yddM	formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
Reads supporting (aligned to +/- strand): ref base C (105/208); new base A (117/36); total (234/245)
Fisher's exact test for biased strand distribution p-value = 1.57e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 486 total aligned reads displayed.

CATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATC  >  NC_000913/1552041‑1552341

 atatTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTc                                                                                                                                                        >  4:792324/1‑150 (MQ=31)

       tAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTGCAAATggg                                                                                                                                                 >  7:1237626/1‑150 (MQ=14)

        aGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgcg                                                                                                                                                >  4:548615/1‑151 (MQ=33)

           cAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTGAAATGGCGCTg                                                                                                                                             >  6:197708/1‑151 (MQ=17)

           cAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCACTTTCTAAAGGGGCTg                                                                                                                                             >  5:431636/1‑151 (MQ=12)

            aaCGTAGGCTTTGTTCATGCCGGATTCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCCGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt                                                                                                                                            >  7:566405/1‑151 (MQ=25)

               gTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTAGAAATGGCGCTGTat                                                                                                                                          >  5:802101/1‑149 (MQ=14)

               gTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTAAAAATGGCGCTGTaa                                                                                                                                          >  1:399505/1‑150 (MQ=17)

                 aGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa                                                                                                                                        <  8:1388851/150‑1 (MQ=38)

                 aGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaa                                                                                                                                         >  5:388096/1‑149 (MQ=38)

                  ggCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAgg                                                                                                                                      <  3:30258/151‑1 (MQ=39)

                     tttGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGATATaaaaagagt                                                                                                                                   >  3:581450/1‑146 (MQ=255)

                          tCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt                                                                                                                               <  5:1371918/150‑1 (MQ=255)

                          tCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt                                                                                                                               <  7:330226/150‑1 (MQ=255)

                          tCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAAAGGCGCTGTAAAAGGCGTCAtt                                                                                                                               <  7:713905/150‑1 (MQ=255)

                           cATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtttt                                                                                                                             <  3:215659/151‑1 (MQ=255)

                           cATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAttt                                                                                                                              <  1:216005/150‑1 (MQ=255)

                            aTGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTAAAAATGGCGCTGTaaaaagatacatttt                                                                                                                             >  2:485329/1‑139 (MQ=11)

                              gCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCa                                                                                                                           <  7:1428056/150‑1 (MQ=255)

                              gCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGAGTCATTTTCat                                                                                                                          >  2:17596/1‑151 (MQ=255)

                               ccGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTCAACGTGTAGGCCTCATAAGCGTAGCGCATCAGGCAATGTTGCGTTAGTCATCAGTTTAAAATGGCGCTGTAAAAAGAGACATTATCaa                                                                                                                          >  2:1559893/1‑149 (MQ=11)

                                cGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTAAAAATGGCGCTGTAAAAAGAGACATTTTAatat                                                                                                                        >  1:1535862/1‑151 (MQ=11)

                                 ggATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATAtt                                                                                                                       <  8:720881/151‑1 (MQ=255)

                                 ggATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATAtt                                                                                                                       >  7:1360339/1‑151 (MQ=255)

                                 ggATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATAtt                                                                                                                       <  7:1466068/151‑1 (MQ=255)

                                     gcggcgTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTATGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTa                                                                                                                    <  3:1276011/150‑1 (MQ=255)

                                      cggcgTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTAAAAATGGCGCTGTAAAAAGAGACATTTTAATATTGTaa                                                                                                                   >  1:1280157/1‑149 (MQ=11)

                                            gAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACg                                                                                                             <  1:672012/150‑1 (MQ=255)

                                              aCGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTTATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAg                                                                                                          <  2:623525/151‑1 (MQ=255)

                                              aCGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAg                                                                                                          <  1:558548/151‑1 (MQ=255)

                                               cGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAgg                                                                                                         >  7:885707/1‑151 (MQ=255)

                                               cGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTAAAAATGGCGCTGTAAAAAGCGTCATTTTAATATTGTAGACAAAGAAgg                                                                                                         >  2:300817/1‑151 (MQ=14)

                                                gCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAATGCGGCATTTTCATATTGTATACAACGTAggg                                                                                                        >  5:752369/1‑150 (MQ=255)

                                                 ccTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTTTAAAAGGGGTCATTTTAATATTGTAGACAAAGTAGGCt                                                                                                       >  7:636687/1‑151 (MQ=255)

                                                 ccTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGGGGCATTTTGATATTGTAGACAACGTAGGCt                                                                                                       >  5:1554422/1‑151 (MQ=255)

                                                    tATCCGTCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCtt                                                                                                      <  7:225298/149‑1 (MQ=255)

                                                    tATCCGGCATGAAAAGCCTTCAAATCCAATAGATTGCAGTGAACGTGGAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCttt                                                                                                     <  5:896316/150‑1 (MQ=255)

                                                    tATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCttt                                                                                                     <  6:691431/150‑1 (MQ=255)

                                                     aTCCTGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGACTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTg                                                                                                    <  3:1389485/150‑1 (MQ=255)

                                                     aTCCGGCATGAAAACCCTTCAAATCCAATAGATTGCATTGAACGTGTAGGACTGATAAGCGTAGCGCATCAGGCAATGTTGCTTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGt                                                                                                   <  1:725928/151‑1 (MQ=255)

                                                     aTCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATAACTTTAAAAAGGCGATGAATAAGACGTCATTTTCATATTGTAAAAAACGTAGGCTTTGt                                                                                                   >  4:1363519/1‑151 (MQ=17)

                                                      tCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTAAAAAGTTTCAAATGGCGCTTTAAAAAGAGTCAATTACATATTGTAGACAACGTAGGCTTTGtt                                                                                                  >  4:110198/1‑151 (MQ=17)

                                                       cggtcATGAAAACCCTTCAAATCCTATAGATTGAAGTGTACGTGTAGGCCTTATACCCGTAGCGCATCAGTCAATGTTGCTTTTTTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGtt                                                                                                  <  2:865604/146‑1 (MQ=25)

                                                            aTGAAAACCCTTCAAATCCAATAGATTGCAGTGATCGTGTAGGACTTATATGCGTAGAGCATGATTAAATGTTTTTTTTTTTATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGcc                                                                                            <  1:882547/151‑1 (MQ=21)

                                                            aTGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTATACAACGTAGGCTTTGTTCATGcc                                                                                            >  6:1295641/1‑151 (MQ=255)

                                                             tGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCTTATTGTAGACAACGTAGGCTTTGTTCATCCCg                                                                                           >  8:815828/1‑151 (MQ=255)

                                                             tGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTTTAAAAGGAGTCATTTTCATATTGTAGACAAAGTAGGCTTTGTTCATcccc                                                                                           >  2:808941/1‑150 (MQ=255)

                                                               aaaaCCCTTCATATGCAATAGATTGAAGTGAAAGTGTAGTCATTATAATCGTAGCTCATCAGTAAATGTTTCTTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGa                                                                                         <  1:465664/151‑1 (MQ=21)

                                                               aaaaCCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTTTATAAGGGGGCATTTTCTTATTGTAGAACACGTAGGCTTTGTTCATGCCgtt                                                                                         >  8:1311810/1‑149 (MQ=14)

                                                                aaaCCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGGGTCATTTTCTTATTGTAGACAACGAAGGCTTTGTTCATGCAgg                                                                                          >  6:112164/1‑149 (MQ=255)

                                                                 aaCCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTATAAGGCGTCATTTTAATATTGTAGACAACGTAGGCTTTGTTCATGCACGATg                                                                                       >  3:930144/1‑151 (MQ=255)

                                                                       tCAAATCCAATAGATTGCAGTGAACTTGTAGGCCTGAAAACCGTATCCCCTCAGGAAATGTTGGGTTTGTCAGCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGCCCACGTAGGCGTTGTTCATGCCGGCTGCGGCGt                                                                                 >  6:608401/1‑151 (MQ=21)

                                                                       tCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggc                                                                                   <  7:965620/149‑1 (MQ=255)

                                                                        cAAATCCAATAGATTGCAGTGAACGTGTAGTCATGATAATCGTAGCGCATCAGGCAATGTTTCTTTTGTCATAAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGt                                                                                 <  1:1181187/150‑1 (MQ=25)

                                                                        aaaaTCCAATAGATTGCAGTGAACGTGTAGTCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTg                                                                                <  4:65843/150‑1 (MQ=255)

                                                                           aTCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACCACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAAc                                                                             >  8:1037199/1‑151 (MQ=255)

                                                                            tCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTGATATTGTAGACAACGAAGGCTTTGTTCATGCCCGATGCGGCGTGAAcc                                                                            >  4:1186842/1‑150 (MQ=255)

                                                                            tCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTAAAAATGGCGCTTTAAAAGGAGTCATTTTAATATTGTATAAAAAGTAGGCTTTATTCATGCAGGATgagtcttgatac                                                                            >  3:154610/1‑140 (MQ=17)

                                                                             ccAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGGGGCATTTTCATATTGGATACAAAGTAGGCTTTGTTCATGCCGGCTGCGGCGtcacccg                                                                           >  6:501302/1‑145 (MQ=18)

                                                                               aaTAGTTTGTAGTGAATGTGTAGGCCTGATATGCGTAGCGCATCAGTCAATGTTGCGTTTGTGATCAGTTTGAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCt                                                                         <  2:753084/151‑1 (MQ=21)

                                                                                      tGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg                                                                   <  8:1573390/150‑1 (MQ=255)

                                                                                      tGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTATAAGGGGTCATTTTAATATTGTTGACAAAGTAGGCTTTGTTAATGCAGGATGCGGCTTGAAAGCCTTATCAgg                                                                  >  5:1120235/1‑151 (MQ=18)

                                                                                       gCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                 <  6:885893/151‑1 (MQ=255)

                                                                                        cAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCa                                                                <  5:1246873/151‑1 (MQ=255)

                                                                                        cAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCAGGATGCGGCGTGAACGCCTTATCCGGc                                                                 >  4:62105/1‑150 (MQ=255)

                                                                                            gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGa                                                             <  8:895734/150‑1 (MQ=255)

                                                                                            gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGa                                                             >  4:1013041/1‑150 (MQ=255)

                                                                                             aaCGTGTAGGCCTGATACGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGaaa                                                           <  1:981917/151‑1 (MQ=255)

                                                                                                gtgtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAcc                                                        >  8:183894/1‑151 (MQ=255)

                                                                                                  gtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCt                                                      <  6:1333659/151‑1 (MQ=255)

                                                                                                   tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCAGGATGCGTCGTGAAAGACATATCCGGCATGAAAACCCtt                                                     >  2:1247342/1‑151 (MQ=255)

                                                                                                   tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGGCATTTTGATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCTTGAACGCGTTATCCGGCATGAAAACCCtt                                                     >  6:1168203/1‑151 (MQ=255)

                                                                                                    aGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTGATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACCCCTTAGACGGCATGAAAACCCTTc                                                    >  5:608346/1‑151 (MQ=255)

                                                                                                    aGGACTGATAAGCGTAGCTCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCtt                                                     <  3:853147/150‑1 (MQ=255)

                                                                                                        cTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGGGCTGTAAAAGGCGTCATTTTAATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAAt                                                >  6:309101/1‑151 (MQ=255)

                                                                                                         tGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATc                                               >  7:1011017/1‑151 (MQ=255)

                                                                                                         tGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCGGATCCGGCATGAAAACCCTTCAAATc                                               >  5:321840/1‑151 (MQ=255)

                                                                                                          gATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATcc                                              <  6:1432914/151‑1 (MQ=255)

                                                                                                          gATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTATAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAAt                                                <  4:250485/149‑1 (MQ=255)

                                                                                                             aaGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAAt                                           <  5:1043344/151‑1 (MQ=255)

                                                                                                               gCGTATCGCATCAGTCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAg                                         <  3:1487722/151‑1 (MQ=255)

                                                                                                                   aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTAATATTGTAGACACCGTAGGCTTTCTTCATGCCGGATGCGGCGTTAACGCCATATCCGGCATGAAAACCCTTAAAATCGAATAGATTg                                     >  1:1435044/1‑151 (MQ=18)

                                                                                                                    gcgcATCAGTCTATGTTGGGGTTGTCATCAGTTTCAAATGGCGATGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGc                                    <  7:1086523/151‑1 (MQ=255)

                                                                                                                    gcgcATCAGGCAATGTTGCGTTTGTCATCAGTTTGAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGACTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGc                                    >  2:1101761/1‑151 (MQ=255)

                                                                                                                       cATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTTTAAAAGGAGTCATTTTAATATTGAAGAAAACGTAGGCTTACTTCATTCCGGATGAGACTAGAGCGCCTTTTCCGGCAGGAAAACCCTTCAAATCAAATAGATTGCAGt                                 >  5:68221/1‑151 (MQ=25)

                                                                                                                        aTCAGTGAATGTTTTTTTTGTGATAAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTg                                <  3:1112245/151‑1 (MQ=14)

                                                                                                                        aTCAGGCAATGTTTCGTTTGTTATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTg                                <  3:663357/151‑1 (MQ=255)

                                                                                                                        aTCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAACGCGTCATTTTGATATTGTAGAAAAAGTAGGCTTTGTTCATGCCGGATGCCGCTTGAAAGCCTTATGCGGCATGAAAACCCATCAAATCCAATAGAttcaagt                                 >  6:1539743/1‑145 (MQ=17)

                                                                                                                           agtcAATGTTGCTTTTTTCATCAGTTTCAAATGGCGCTGTAAAAGTAGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAAc                             <  3:443270/148‑1 (MQ=255)

                                                                                                                           aGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAAc                             <  8:359936/151‑1 (MQ=255)

                                                                                                                              cAATGTTGCGATTGTCATATGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACgt                           <  8:572605/150‑1 (MQ=255)

                                                                                                                              aaaTGTTGAGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACgt                           <  4:1583924/149‑1 (MQ=255)

                                                                                                                                  gTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTAATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGACTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAgg                      >  2:1304149/1‑151 (MQ=255)

                                                                                                                                        tttttgattaGTTTCTTATGGTGCTGTAAGATGTTGCTTTGTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCt                   <  1:1004768/139‑1 (MQ=11)

                                                                                                                                        ttttTCTTCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGa                 <  4:1535950/150‑1 (MQ=255)

                                                                                                                                         ttGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGAt                >  3:378526/1‑150 (MQ=255)

                                                                                                                                               tcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACCCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGt          >  7:48735/1‑150 (MQ=38)

                                                                                                                                                 aGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgc       >  5:1324295/1‑151 (MQ=35)

                                                                                                                                                 aGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgc       >  6:812354/1‑151 (MQ=35)

                                                                                                                                                    ttCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgcgc     >  8:477096/1‑150 (MQ=33)

CATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATC  >  NC_000913/1552041‑1552341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`