Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,269,9940GT27.6% 240.8 / 18.2 181intergenic (+392/+631)yhaC/garKpentapetide repeats‑related protein/glycerate kinase I
Reads supporting (aligned to +/- strand):  ref base G (13/100);  new base T (2/41);  total (17/164)
Fisher's exact test for biased strand distribution p-value = 2.40e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 184 total aligned reads displayed.

GAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT  >  NC_000913/3269845‑3270140
                                                                                                                                                     |                                                                                                                                                  
gAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGa                                                                                                                                                   <  5:489668/151‑1 (MQ=255)
  acgaggccgtatagttttATTAAGTACATGAGGTAATACTGAGCTATATGCGTGTTTGTTTTTGTTTTAGTGTCGTTGACAGTCATTCATCTTTCTGCCCCTCCTAAAGTAAAAACGCTCCTAAGCTGGTTTTTACTTAAAACATGTGaaa                                                                                                                                                 <  8:315805/136‑1 (MQ=9)
  aaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaaa                                                                                                                                                 <  7:231723/151‑1 (MQ=255)
   aCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAc                                                                                                                                                <  4:1232172/151‑1 (MQ=255)
    cccGCCGGAACGGTTTATTACGTACTTCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCAAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGCGAAACt                                                                                                                                               <  2:825764/151‑1 (MQ=255)
    cccGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACt                                                                                                                                               <  2:637241/151‑1 (MQ=255)
    cccGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACAGATAAGAAGCTATAATTTTAGTATAAAGTAGTAGACAATAATTAATATTTCTGACCAACCAAAATCAAAAAAAAAAAAAAGCGGGTTTTTACGGAAAAGAGGGGAAACt                                                                                                                                               >  3:1070917/1‑151 (MQ=255)
     ccgccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTg                                                                                                                                              <  7:557344/151‑1 (MQ=255)
      cgccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                                                                                                                             <  5:1229214/151‑1 (MQ=255)
         cgGAACGGGTTATTACGTACATCAGGTAAAACTTATTTATAAGTCTTTTTCTTTTGTGTTTATTGTCGTGTACAGTCATTCATCTTTCTGTCCATCCATAAGTTAAAATCTGCCGTATCGGTTTTTTACGTAAATCAGGTGAAACTGACCg                                                                                                                                          <  1:671358/151‑1 (MQ=9)
          ggAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGa                                                                                                                                         <  6:1110442/151‑1 (MQ=255)
             aCGGTTTATTACGTACATCAGTTAAAACTGACCGATAAGACGCTTTCTTTTGTGTATTGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCTGGTTTTTACGTAAAACAGGTGAAACTGACCGATaa                                                                                                                                      <  2:1023201/151‑1 (MQ=255)
             aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATaa                                                                                                                                      <  5:162982/151‑1 (MQ=255)
             aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATaa                                                                                                                                      <  6:288852/151‑1 (MQ=255)
             aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATaa                                                                                                                                      <  7:808777/151‑1 (MQ=255)
              cGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg                                                                                                                                     <  8:1417619/151‑1 (MQ=255)
               gggttattaCGTACATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGCGCATAGTGTCGTGGACAGTAATTCTTCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGTAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                                    <  5:650330/148‑1 (MQ=11)
               ggTTTATTACGTACATCAGGTAAAACTGTCCGATAAGCCGCTTTCTTTTTGTTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCGCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                                    <  7:376328/151‑1 (MQ=255)
               ggTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                                    <  5:1247496/151‑1 (MQ=255)
               ggTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                                    <  2:876235/151‑1 (MQ=255)
                gTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGcc                                                                                                                                   <  6:1538653/151‑1 (MQ=255)
                 tttATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCGTGGCCAGGCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAATGTCGGATGCGCCg                                                                                                                                  >  7:1279615/1‑151 (MQ=14)
                  ttattaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCg                                                                                                                                  <  1:1085111/150‑1 (MQ=255)
                  ttattaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCg                                                                                                                                  <  1:231562/150‑1 (MQ=255)
                   tattaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc                                                                                                                                 <  3:393456/150‑1 (MQ=255)
                   tattaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc                                                                                                                                 <  1:122398/150‑1 (MQ=255)
                    attaCGTAGATCATGTAAAACTGACCGATATGCCGCTTTCTTTTGGGTTTCGTGTCGTGGACAGTGATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctt                                                                                                                               <  7:956328/151‑1 (MQ=14)
                    attaCGTACATCAGTTAAAAATGAGCGATAAGACGCTTTCTTTTGGTTATAGTGTCGTGGAAAGTCATTCATCTTTCTGCCCCTCCAAAATTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctt                                                                                                                               <  3:1537960/151‑1 (MQ=14)
                       aCGTACCACAGGTAAAACTGACCGATAAGGCGTTGGCTTTTGGGTATCGTGTCGTGGACAGCCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttc                                                                                                                             <  1:1327922/150‑1 (MQ=11)
                       aCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct                                                                                                                            <  4:1048254/151‑1 (MQ=255)
                        cGTAGATCAGTTAATACTGACCGATAAGTTGCTTTCTTTTGTTTATAGTGTCGTGGACAGTCTTTCATCTTTCTGCCCCTCAAAAAGTAAAAACCCGCCGAATCGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttctt                                                                                                                           <  2:1123462/151‑1 (MQ=14)
                        cGTACATCAGTTAACACTTACCGATAAGCCGCTTTCTTTTGGGTATAGTCTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttctt                                                                                                                           <  3:302892/151‑1 (MQ=255)
                        cGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATCGTGTCGTGGACAGGCATTCATCTTTCTGCCACTCCAAAAGTAAAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttctt                                                                                                                           <  8:1248374/151‑1 (MQ=255)
                          tACATCATTTAACACTGACCGATAAGCCGCTTTCTTTTTTTTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttctt                                                                                                                           <  3:1421731/149‑1 (MQ=11)
                           atataagttAAATCTTACCGATAATTCTATTTCTTTTGGTTATAGATTTGTCTACAGTAATTGATTTTTATGTCACTCAAAAATCTTAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGggttctgtc                                                                                                                         <  4:451073/142‑4 (MQ=9)
                           aCATCAGGTAAAACTGACCGATCAGCCGCTTTCTTTTGGGTAGAGTGTCGTGGACAGGCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg                                                                                                                        <  5:236634/151‑1 (MQ=255)
                           aCATCACGTAAAACTGACCGATAAGCCACTTTCTTTTGGGTATAGTGTCGCGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCtttt                                                                                                                         <  8:79023/150‑1 (MQ=255)
                             aTCAGTTAAAACTGTCCGTTAATCCGCTTTCATTTGTGGTTATTGTCGTGGACAGTGCTTCTTCTTTATGGCACTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTggg                                                                                                                      <  2:1153886/151‑1 (MQ=11)
                             aTCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTggg                                                                                                                      <  6:1216807/151‑1 (MQ=37)
                               cAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAAAAGGTAAAACGGCCGGATAGGCAACATTGTTTTGGGt                                                                                                                     >  4:1507594/1‑150 (MQ=11)
                                aGGTAAAACTTACCGATCAGCCGCTTTCTTTTGGTTATCGTGTCGTCGACAGTGATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtat                                                                                                                   <  8:184463/151‑1 (MQ=11)
                                aGGTAAAACTGACCGATAAGCCGCTTTCTTTTGCGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtat                                                                                                                   <  6:480026/151‑1 (MQ=25)
                                 ggTAAAACTGAACTATAAGCTTCTTTCTTTTGGTTATAGAGTCTTTTACAGTCTTTATTATTTATGCCACTCCAAAATCATAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGtata                                                                                                                  <  4:265632/151‑1 (MQ=2)
                                 cgTAACACTGACCGATCAGCCGCATTCTTTTGCTTACTGTGTCGTGGACTCTCATTCCTCTTTATGCCACTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt                                                                                                                     <  4:1193737/147‑1 (MQ=11)
                                    atcaCTGACCGATAATCCGTTTTCTGTTGTGTAGAGTGTCGTCGACAGTCTTTCTTCTTAATCGCACTCCAAAATTAAAACCCCGCCGAACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtg                                                                                                               <  1:572788/148‑1 (MQ=11)
                                    aacactttccGTTATGCTGCTTTCTTTATCGTTTTGTGTCGTGGACAGTGATTATTATTTCTTCCCCTCAAAAATTATAAACCCGCCGTATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtg                                                                                                               <  2:517650/143‑1 (MQ=2)
                                     aaaCTGACCGATAAGCCGCTTTCTTTTTGCTATAGTGTCGTGGACAGTCATTCCTCTATCTGCCACTCCAAAAGCAAAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt                                                                                                              <  8:1149384/151‑1 (MQ=11)
                                        atGACCGATAAGGCGCTTTCTTTTGGCGATAGTGTCGGGGACAGTCCTTCATATTTCTGGCCCTCAAAAAGGAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGt                                                                                                           <  8:566353/150‑1 (MQ=11)
                                           acggATATGCAGCTTTCTTTTTTTTATAGTGTCGTTGACTGTCATTCATCTTTCTGCCCCTACAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCGTgg                                                                                                         <  7:673161/147‑1 (MQ=11)
                                              gATAAGCCGCTTTCTTTTGGGTATAGTGTCGGGGACAGTGATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAg                                                                                                     <  6:1013640/151‑1 (MQ=255)
                                                 atgctgttttctttTTGTTATCTTGTCGTGGAAAGTCATTGTTATTTCTGGCACTCCAAAATTATAAACCCGCCGAAGCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtca                                                                                                  <  3:329241/144‑1 (MQ=11)
                                                 aaGCCGCTTTCTGTTGGGTATAGTGTCGTCGAAACTGTATCTACTATATGCCACTCAAAAAGGAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtc                                                                                                   <  6:1482419/150‑1 (MQ=11)
                                                  aGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGAAAAAACCCGCCGAAGCGCGTTTTTAAGTAAAACAGGTGAAACTGCCCGATAAGCCGCGTTCTTTCGTGGATAGtctctccgaaacgcc                                                                                                  >  7:406632/1‑139 (MQ=11)
                                                    atgCTTTCTTTTTGGTATTGTGTCGTGGAAAGTCATTCATCTTTATGCCACTCAAAAATTAAAAACCCGCCGAATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtcatt                                                                                                <  4:626217/148‑1 (MQ=11)
                                                      gCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAACTAAAAAACCCCCCAAGCGGGTTTTTAACTAAAAAAGGTGAAACAGACCGATAACCCGCTTTGTTTTTGGTATAGTGTCGAGGGCaaacgagact                                                                                             >  5:592164/1‑142 (MQ=11)
                                                      gCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTAATCTTTATGCCCCTACAAAAAAAAAAAACACCCGAAACGGGTTTTTAAGTAAAAAACGTGAAAATTAACAAAAAAACGCGTTCTTTAGTGTAAAgtg                                                                                                               >  1:449198/1‑133 (MQ=2)
                                                         ttctttTGGTTCTAGTGTCCGGGACAGGCATTAATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCt                                                                                           <  2:600476/150‑1 (MQ=11)
                                                             ttaggctataGTGTCGTGGACAGGCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCttt                                                                                         <  8:1076122/142‑1 (MQ=255)
                                                             tgtGGGGATAGTGTCGGCGAAAGTCCTTCCTCTTTCTGCCACTCCAAAAGCACAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCt                                                                                       <  7:497843/148‑1 (MQ=11)
                                                                tgcgagaGTGTCGTCGACAGTGATTCATCTTTATGCCCCTCCAAAAGTTTAAACCCGCCGAAGCTGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGcc                                                                                    <  8:635365/144‑1 (MQ=11)
                                                                    atatTGTCGTGGAATGTCATTTTTATTTATGCCACTCAAAAATTATAAACCCGCCGTATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTca                                                                               <  3:494039/151‑2 (MQ=11)
                                                                         gtcgacgACAGTCACTCAACTTTCTCCCCCTCCAAAAGTAAAAACCCGCCGCAGCGGGTTTTTACGTACAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAg                                                                          <  6:1489447/145‑1 (MQ=11)
                                                                             gcgaaagtgcttcatCTATATGCCACTCAAAAATTATAAACCCGCCGCACCGGTTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTCTCTGCCCCTCCAAAAGCaaa                                                                      <  3:1248725/141‑1 (MQ=11)
                                                                              ggaaagtgttttttatttATGCCACTCAAAAATTATAAACCCGCCGTATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCaaaa                                                                     <  2:364924/136‑1 (MQ=11)
                                                                                acagtgatttttatatCTGCCACTCCAAAAGTTTAAACCCGCCGTATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAc                                                                   <  4:21223/136‑1 (MQ=11)
                                                                                     gtttgtaatttCTGCCACTCCAAAATTATAAACCCGCCGTATCGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgcc                                                              <  4:827017/143‑1 (MQ=11)
                                                                                       tttttatttatggcacTCAAAAATTATAAACCCGCCGTATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgccg                                                             <  3:661162/135‑1 (MQ=11)
                                                                                       ttcttatatatcgcacTCAAAAATTACAAACCCGCCGAATCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgccg                                                             <  1:1420101/135‑1 (MQ=11)
                                                                                       ttattatatCTGCCACTCAAAAAGGACAATCCGGCCGAACCGGTTTATTACGTAAATCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgccg                                                             <  3:49420/142‑1 (MQ=11)
                                                                                        tcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGATTTTTACGTAAAAAAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACACTAATTAAAAATTATGCCCCTCCAAAAGCAAAAACCCGCCGa                                                            >  4:538238/1‑150 (MQ=11)
                                                                                            atttCTGCCCCTCCAAAAGCATAAACCCGCCGAATCGGTTTTTTACGTAAAACAGGTTAAACTGAGCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgg                                                       <  6:681297/150‑1 (MQ=11)
                                                                                              ttCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgg                                                       <  7:539899/149‑1 (MQ=35)
                                                                                              tacTGCCACTCCAAAATTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGc                                                         <  7:1527673/145‑1 (MQ=255)
                                                                                               acTGCCCCTCCAAAAGGAAAAACCCGCCGAATCGGGTTATTACGTAAAACAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtt                                                    <  3:1172498/150‑1 (MQ=255)
                                                                                                  gCCACTCAAAAATTAAAAACCCGCCGCATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt                                                 <  1:307226/151‑1 (MQ=11)
                                                                                                  cccccTCCAAAAGGACAAACCCGCCGAAGCGGGTTATTACGTAAATCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt                                                 <  7:453710/150‑1 (MQ=255)
                                                                                                      cTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGCGCGATAAGCCGCTGTCATTTGGGTATAGTGTCGTGGCCAGGGATTGAACTTTCAGCCCCGGGCAAAGCAAAAACCCGCCGCAGCGGGGTTTTAGGt                                             >  7:1093912/1‑151 (MQ=11)
                                                                                                        ccacaatcacaaaCCCGCCGCAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTaa                                           <  8:765231/141‑1 (MQ=255)
                                                                                                        ccaaaatataaaaCCCGCCGTATCGGGTTATTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGt                                             <  2:1574926/140‑1 (MQ=11)
                                                                                                        caaaaaTTATAAACCCGCCGAATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGt                                             <  4:1392437/147‑1 (MQ=11)
                                                                                                        caaaaaGAAGAAACCAGCCGAATCGGTTTTTTAAGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTa                                            <  1:841840/148‑1 (MQ=11)
                                                                                                         aaaaaTTATAAACCCGCCGAATCGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAAGTaaa                                          <  4:42224/150‑1 (MQ=11)
                                                                                                          acaagaacaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAc                                         <  8:422994/143‑1 (MQ=21)
                                                                                                          aaaagctcaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAc                                         <  5:1529394/143‑1 (MQ=18)
                                                                                                            aagcacaaaCCCGCCGCACCGGTTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa                                       <  6:182522/145‑1 (MQ=11)
                                                                                                             agcacaaaCCCGCCGCACCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg                                      <  7:915506/146‑1 (MQ=11)
                                                                                                             aGTTAAAACCCGCCGTAGCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg                                      <  4:1402563/151‑1 (MQ=255)
                                                                                                              ggacaaaCCCGCCGAAGCGGGTTTTTACGTACAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg                                     <  7:762376/147‑1 (MQ=255)
                                                                                                              gTAAAAACCCGCCGAACCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg                                     <  6:810747/151‑1 (MQ=255)
                                                                                                              agtaaaaCCCGCCGGAACGGTTTTTTAAGTTAAACATGTTAAAATGACCGTTTAGGCGCTTTCTTTTTGGTATATTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg                                     <  3:1393246/148‑1 (MQ=11)
                                                                                                                aaaacCCCGCCGCACCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGt                                    <  6:577305/150‑1 (MQ=255)
                                                                                                                   aaCCCGCCGCAGCGGGTTTTTACGTACAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaaa                                <  5:1072969/151‑1 (MQ=255)
                                                                                                                    aCCCTCCGTAGCGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAAc                               <  1:438269/151‑1 (MQ=255)
                                                                                                                     cccGCCGTATCGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACt                              <  2:1199630/151‑1 (MQ=255)
                                                                                                                               cGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg                    <  7:987554/151‑1 (MQ=25)
                                                                                                                                gggTTTTTACGTACAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGCGTCTAGTGTCGTGGACAGGCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGc                   <  6:1294207/151‑1 (MQ=255)
                                                                                                                                 gttttttACGTAAAACATTTTAAAATGAGCGATAAGTTGCTTTCTTTTGTTTTTAGTGTCGTGGAAAGTGATTCATATTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGcc                  <  4:1599978/149‑1 (MQ=11)
                                                                                                                                    ttttACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGGGAGTCATTCATATTTTTGGACCGTCAACAGCAAAAAACCGCCGAAGCGGGGTTTTTCGTATAACACGGGAAAAAGCCCCATAAGCCggt               >  7:63450/1‑149 (MQ=2)
                                                                                                                                         cGTAGAACAGGTTAAACTGACCGATAAGCCGCATTCATTTGGGGATCGTGACGGGGACAGCCTTTCCTCTTTCTCCCCCTCAACAAGCACAAACCCGCCGAACCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttctt          <  8:154378/151‑1 (MQ=11)
                                                                                                                                                 agctGAAGCTCACCGATAAGCGGATTACTTTCTGGTCTTCTGTCGTGTGCTCTCACTCTGGTTTATCGCACTCAAAAATCATAAACCCGCCGAATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGtat  <  5:1008623/148‑1 (MQ=2)
                                                                                                                                                     |                                                                                                                                                  
GAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT  >  NC_000913/3269845‑3270140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑