BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	696,534	0	G	T	25.4%	255.1 / 49.1	134	intergenic (‑30/+8)	glnX/glnV	tRNA‑Gln/tRNA‑Gln
Reads supporting (aligned to +/- strand): ref base G (39/61); new base T (6/28); total (45/89)
Fisher's exact test for biased strand distribution p-value = 3.44e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 136 total aligned reads displayed.

GAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCG  >  NC_000913/696385‑696684

gaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGa                                                                                                                                                       <  3:1310660/151‑1 (MQ=255)

 aaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGaa                                                                                                                                                      <  3:1334764/151‑1 (MQ=255)

 aaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGGCTAGa                                                                                                                                                       >  5:1410834/1‑150 (MQ=255)

  aCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAAt                                                                                                                                                     <  2:1335736/151‑1 (MQ=255)

   cGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATa                                                                                                                                                    <  7:475646/151‑1 (MQ=255)

    gCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATaa                                                                                                                                                   <  8:822013/151‑1 (MQ=255)

    gCAGAAAAGCAAAAAGCGCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATaa                                                                                                                                                   <  6:296698/151‑1 (MQ=255)

     cAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATaaa                                                                                                                                                  <  7:1566735/151‑1 (MQ=255)

     cAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATaaa                                                                                                                                                  <  7:921772/151‑1 (MQ=255)

      aGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTGGGAATGCGGGCATGAGTGTCCTGGGGGGTAGCGGGTGGCGATACCCCACCGGGGTGGTGTTTCAAGTTAAGCGTCTTgtcgatgg                                                                                                                                                 >  3:458723/1‑144 (MQ=255)

       gAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAAtt                                                                                                                                                <  7:1199965/151‑1 (MQ=255)

       gAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGATGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAAtt                                                                                                                                                >  4:947466/1‑151 (MQ=255)

        aaaaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTg                                                                                                                                               <  5:1218243/151‑1 (MQ=255)

          aaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGc                                                                                                                                             <  7:634418/151‑1 (MQ=255)

              aaaaaGCGCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTggg                                                                                                                                         <  8:1199824/151‑1 (MQ=255)

                aaaGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGGATCAGAATCCGGTGCCTTACCGCTTGGCGCTACCCCCACAGGGTGCTGTTACAAGGTAAGCGTCTTTAATAAATTGGCTGGGGt                                                                                                                                       >  1:480940/1‑151 (MQ=25)

                aaaGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGt                                                                                                                                       <  2:281200/151‑1 (MQ=255)

                aaaGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGt                                                                                                                                       <  3:691607/151‑1 (MQ=255)

                aaaGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGt                                                                                                                                       <  5:1379022/151‑1 (MQ=255)

                 aaGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAAGCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTa                                                                                                                                      <  7:865627/151‑1 (MQ=255)

                  aGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTAc                                                                                                                                     <  2:818227/151‑1 (MQ=255)

                  aGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTAc                                                                                                                                     <  8:187136/151‑1 (MQ=255)

                   gCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACg                                                                                                                                    <  8:1553775/151‑1 (MQ=255)

                     tCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAGAGAGGATGCGCAGCCGTAGCGCGTCCAGAAACGCCCAAGAATTGCAGTTACACGGTAAGCGTCTTGAATAAAATGGCTGGGGttgggg                                                                                                                                  >  1:698399/1‑146 (MQ=16)

                     tCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATGAGCATCAGCTGCCTTCACCCGTCGAGAGACTCCGGCGAGGTGGGGTTTCATGGTACGCGTCTTGAATAAATAGGCTGGGGTTCgtg                                                                                                                                  >  5:225607/1‑149 (MQ=12)

                      cGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAgg                                                                                                                                 <  1:1659098/151‑1 (MQ=255)

                        ccGTAGCGATCTTTTTTAATTTGGCTGGGGTACGATGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTTGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGAt                                                                                                                               <  8:1469065/151‑1 (MQ=255)

                        ccGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTATGTGCACTTCCAAGTTAAGCGAATTGAATATAGTTGCTGAATTACGAggct                                                                                                                               >  5:1431764/1‑149 (MQ=18)

                         cGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGATCCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTTGGTGCACTTACAAGGTAAGCTTCTTGAATAAATTGGCTGGGGTACGAGGAtt                                                                                                                              <  6:636266/151‑1 (MQ=255)

                         cGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCTGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGAtt                                                                                                                              <  2:59453/151‑1 (MQ=255)

                         cGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAACTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGAtt                                                                                                                              <  2:524503/151‑1 (MQ=255)

                         cGAAGCGAGCTTTTTTAATGTGGCTGGGGGACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGAtt                                                                                                                              <  3:856863/151‑1 (MQ=255)

                          gAAGCGAGCTTTTTTAATGTGGCTGGGGTACGATGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTTAATAAATTGGCTGGGGTACGAGGATTc                                                                                                                             <  1:1357955/151‑1 (MQ=255)

                          gAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTTAATAAATTGGCTGGGGTACGAGGATTc                                                                                                                             <  6:603179/151‑1 (MQ=255)

                          gAAGCGAGCTTTTTTAATGTCGCTGGGGTACGAGGATTCGACCCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTc                                                                                                                             <  5:264366/151‑1 (MQ=255)

                           aaGCGAGGTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAACTCTGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCg                                                                                                                            <  4:1616508/151‑1 (MQ=255)

                           aaGCGAGCTTTTTTAATGTGGCTGGGGGACGAGGCTTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGCTACCCCAACTGGGTGCACTTACCAGGTAAGCGTCTTTAATAAATTGGCTGGGGTACGAGGATTCg                                                                                                                            <  1:1024939/151‑1 (MQ=255)

                             gagAGGTTTTTTAATGTGGCTGGGGTACGAGGTCTCGATCCTCGGAATGCCTGCATCAGAATCCGGTGCCTTAGCGCTTGGCGATACCCCAACTGGGTGCACTTACTAGGTAAGGGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGaa                                                                                                                          <  8:1657120/149‑1 (MQ=255)

                             gCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGACTCAGAATCCGGTGCCTTACCGCTTGTAGATACCCCAACTGGGTGAACTTACAAGGTAAGCTTCTTTAATAAATTGGCTGGGGTACGAGGATTCGaa                                                                                                                          <  1:692165/151‑1 (MQ=25)

                              cGAGCTTTTTTAATGTGGCTGGGGTACGATGATTCGAAACTCGGAATGCATGAATCAGAATACTTTGCATTAGAGCTTGGAGATACCCAAACTTGGTTCACTTACAACGTAAGGGTCTTTAATAAATTGGCTGGGGTACGAGGATTCGAAc                                                                                                                         <  4:415708/151‑1 (MQ=255)

                              cGAGCTTTTTTAATGTCGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCAAACTGGGTGCACTTACAAGGTAAGCTTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAAc                                                                                                                         <  5:1038862/151‑1 (MQ=255)

                                aGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCTGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTTAATAAATTGGCTGGGGTACGAGGATTCGAAc                                                                                                                         <  3:1463643/149‑1 (MQ=255)

                                aGCTTTTTTAATGAGGCTGGGGGACGAGGATTCGAACCTCGGAATGACGGAATCAGACTCCGGGGCCTTACCGCTTGCCGATACCCCAACTGGGTGCAATTACAAGGTAAGCGTCTTTAATAAATTGGCTGGGGTACGAGGATTCGAACCt                                                                                                                       <  3:1410943/151‑1 (MQ=25)

                                    tttttAAAGTGGCTGGGGGACGAGGACTCGATACTCGGAATGCCGGAATCAGAATCCGGGGCCTTACCGCTTGGCGATACCCCAAATGGGTGCACTTACAACGTAAGCGTCTTTAATAAATTGGCTGGGGTACGAGGATTCGAACCTCgg                                                                                                                    <  1:1622753/150‑1 (MQ=25)

                                       ttatagttgcaggggTACGATGTTTTGATACTTTGAATGACTGCATCAGTATCCTGTGCATTACAGCTTGCCGTTACGCATACTTGGATCACTTACCAGGTATGCTGCTTTATTAATTTGGCTGGGGTACGAGGATTCGAACCTCGGAAt                                                                                                                 <  7:365556/139‑1 (MQ=9)

                                       ttAATGTCGCTGGGGTACGATGTGTCGATCCTCGGAATGCAGGTAGCAGTATCCGTGGCCTTACCGCTTGGCGATACCCCAACTTGGTGAACTTACCAGGAAAGGTTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAAt                                                                                                                 <  1:220109/150‑1 (MQ=21)

                                          aagtgGCCGGGGTACGATGCATCCCTACTCGGAATGCCTCAATCAGAATACCGCGCCTTACCGCTTGCCGATACCCACACTTGCTCAACTTACCACGAACCCCGCTTTAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCg                                                                                                             <  5:1545844/149‑1 (MQ=12)

                                          aTGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACAGCTTGGCGATACCCCAACACCGTGCAATTAAAATTTAAGAGGCTTGAATATAGTGGCTGGGGTTCGTGGATACGaccgtagtcgtgccg                                                                                                             >  4:870566/1‑137 (MQ=9)

                                              ggCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGaa                                                                                                          <  2:279376/150‑1 (MQ=255)

                                                cggcgggaCGCGGATTCGACCCTGGGAATGCCGGCATCAGAATCCCGCGCATTACCGCTTGGCGATACCCCCACTCGGATCACTTACAACGTACGCCTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCa                                                                                                       <  1:293706/144‑1 (MQ=25)

                                                cTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCGTACCGCTTGGCGATACCCAAACTGATTGAACTTACAAGGTACGACGCTTGATGAAAGTTTCTGCGGTACGAGTCTTCGAAGCTCggcggccaggagtcc                                                                                                       >  2:852675/1‑138 (MQ=9)

                                                 gggggTACGAGGGCTCGAGCCTCTGAATGCCGGAATCAGTATCCGGGGCCTTACCGATTGCCGATACCCCAACTGGGAGCACTTACAACGTACGCCTCTTTAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCAGAATCAg                                                                                                      <  2:1042593/150‑1 (MQ=25)

                                                        cGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGACATACCGCTTGACCATCCCCCACCTGGGTGCAATTACAAGGTACGAGTGGTGAATAAAATTGCTGCCGTAGGTGGATTCGAAGCTGGGCCTGCCGGAATCAgcaggggg                                                                                               >  5:1645029/1‑144 (MQ=12)

                                                            gATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAGCTTGCACTTACAAGTTAAGAGACTTGAAGAAAAAGGCTGCGTTACGAGGCTTCGACCCTCGTAGTGCCTGAGTCAGAATcatgttg                                                                                            >  5:30361/1‑144 (MQ=17)

                                                             agtccaaacTCGGAATGACGCCATCAGACTCCGGGGCCTTACCGCTTGGCGATACCCCAACTGGCTTCACTTACAAGGTAAGCGTCTTTTATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCt                                                                                          <  5:1447684/143‑1 (MQ=25)

                                                                   aCCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGTTGCACTTACAATTGAAGACGCTTTTATAAAATTGCAGAAGTACGAGGCTTCGAACCTAGTAAAGCCGGTATCAGAATcatgttcattcaggg                                                                                    >  4:1581972/1‑137 (MQ=12)

                                                                       gggAATGCAGGAACCAGAATACCGCGCCTTACAGCTTGGAGGTACCCCCACTGGCTTCACTTACAACGTAAGCTTCTTTAATAAAGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCtt                                                                                  <  3:693768/148‑1 (MQ=18)

                                                                        ggAATGCCGGAAGCAGACTCCGGTGCCTTAGCGCTTGGCGCTACGCCCACTGGGTGCACTTACCAGGTACGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGc                                                                               <  3:1639410/151‑1 (MQ=25)

                                                                         gAATGCGGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGCTGCACTTACAACGAAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTg                                                                                 <  5:86840/148‑1 (MQ=255)

                                                                         gAAGGCCGGAATCAGTATCCTGTGCCTTACAGCTTGGCGATACCCCAACTGGGTGCACTTACAACGTAAGCGTCTTTAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTg                                                                                 <  5:78208/148‑1 (MQ=25)

                                                                                  aaTCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCAGTTACAAGGTAAGCGGCTTTAATAAATTGTCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGTAACAGCATCAGTTGCCTTGACGGTAGGCGAGAcactc                                                                      >  2:774434/1‑146 (MQ=25)

                                                                                   aTCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGACTCAGCATCCGGAGCCGTACAGCTTGGGGATAcacggac                                                                    >  1:649327/1‑145 (MQ=37)

                                                                                         aTCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTTCAATTTCCAGGTAAGGCTCTTTAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTg                                                              <  2:562687/151‑1 (MQ=21)

                                                                                          tCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGACCCTCGGATAGCCGGAGTCAGAATCCGGTGCCGTCCCGAGTGGCGATAACCGCACAAATTgg                                                             >  1:1685665/1‑151 (MQ=37)

                                                                                           actgggcattcccGATTGCCGAAACCCAAAAAGGCTTCACTTTCGAGGAACGCGTCTTTTATAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTg                                                              <  3:903732/138‑1 (MQ=2)

                                                                                                 ccTTCCCGCTTGCCGCTACGCCAACTGGGTGCACTTACAACGTACGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGaa                                                      <  8:836627/151‑1 (MQ=21)

                                                                                                  cTTACCGCTTGGCGATACCCCAAGTGCCTGCAGTTGCAAGGTAAGCGTCTAGAATATATTTGCTGGCGTACGAGGCAACGACACTCGGAATGCCTGAATCACAAGCCGGGCACTTACAGCTGGGGGATACACCAAAAAAATgcatgtgaac                                                     >  1:1093078/1‑142 (MQ=255)

                                                                                                  cTTACCGCTTGGCGATACCCCAACTGCGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGTCTGCCGTACGAGGATTCGAACCTCGGAAAGCCGGAATCAGAATCCGGTGCCTTACCGCTTGCCGATACCCCCACAAATTGGTAGTGAAt                                                     >  2:283477/1‑151 (MQ=25)

                                                                                                    tACCGCTTGGCGATACCCCAACTGGGTGCAGTTACAATTTACGCGTATTTAATAAATTGTCTGCATTACGAGGCTTCGACCCTCGTAAAGCCTGAGTCAGAATCAGGTTCCTTACAGATGTGCGAACAACCAACAAAGTGGATATGAAtat                                                   >  8:334301/1‑149 (MQ=255)

                                                                                                       cgcgttgCGATACCACAACTTTGTGGAATTAGATTTGAATCGTCTTGTATATTTTGTTTTGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGcc                                                <  4:820666/145‑1 (MQ=14)

                                                                                                       cGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGTCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGcc                                                >  1:448846/1‑151 (MQ=255)

                                                                                                          ttGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGa                                              >  8:1375593/1‑150 (MQ=255)

                                                                                                           tGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAAc                                            >  1:1522830/1‑151 (MQ=255)

                                                                                                           tGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGACAGAATAAGAAACCCGTGAATTAAAGGATGGCGAAACAAAAACAAATTGGTGTTGAAgttacatac                                             >  4:1242859/1‑144 (MQ=21)

                                                                                                             gatcaaCCCCCACTCGGTGCACTTTCGCGGAAACGTTCTTTATTAATTTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACat                                          <  2:1117423/146‑1 (MQ=17)

                                                                                                                 tACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTc                                      >  5:634031/1‑151 (MQ=255)

                                                                                                                    cccAACTTGGAGAACTGTCAACGTACGCCGCTTTATTAATTTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGAt                                   <  1:961858/151‑1 (MQ=17)

                                                                                                                     ccAACTGGTTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGc                                                                               <  8:1292600/106‑1 (MQ=21)

                                                                                                                          tgtgTGCACTTACAATGTAAGCTTCTTGAATAATTTGGCTGGGGTACGAGGATTCGAACCTGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGa                                                                             <  7:223584/100‑1 (MQ=17)

                                                                                                                          tcgttGCACTTACAATTTAAGCGTCTTGAATAAATTGGCTGGGGTACGTGGATTCGAACCTGGGAATGCCGGTATCACAAACCGGTGCCTTACCGCTTGGCGATAcccc                                                                       <  1:93827/105‑1 (MQ=17)

                                                                                                                          tGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATAcccc                                                                       >  6:93605/1‑109 (MQ=255)

                                                                                                                            gcttaaattACAAGGTACGGAGCTTTTATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAg                           <  1:1508491/144‑1 (MQ=18)

                                                                                                                                  agcactcggTACGCCTCTTTATTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTtg                     <  3:753754/144‑1 (MQ=18)

                                                                                                                                   ttACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTtgg                    >  4:233118/1‑151 (MQ=255)

                                                                                                                                      aaaGTTAACCCTCTTGAATAAATTGGCTGGGGTACGTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCt                                                                                          <  1:383585/77‑1 (MQ=1)

                                                                                                                                       aaGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGc                >  1:1144488/1‑151 (MQ=255)

                                                                                                                                         ggTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCATAAACCGGTGCCTTACCGCTTGGCGATACCCca                                                                      <  8:1206497/95‑1 (MQ=255)

                                                                                                                                         ggTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCca                                                                      >  3:1204388/1‑95 (MQ=255)

                                                                                                                                          gtatcgtgcTTTAATAATTTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCAGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTac             <  6:1398673/143‑1 (MQ=21)

                                                                                                                                           tAATCGTATAGAATAAATTTGCTGCTCTACGATTAATTGAACGTCGGTATTCCGTTATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTac             <  6:1625943/150‑1 (MQ=25)

                                                                                                                                                 tCTTTAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGTATCACAATCCGGTGCCTTACCGCTTGGCGATACCCcaataaccgggc                                                            <  4:222216/97‑7 (MQ=14)

                                                                                                                                                 tCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCg                                                                              >  6:392998/1‑79 (MQ=255)

                                                                                                                                                  cTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTGGGAATGGCGGAATCGCGTTGAGGTGGGTTAGCGGTTGGCGATAGGACAAGATATTGGTTGTGAATTTGGCGATCATATTAGATACTGTCAGAAGTTGGTGGGTAGGGCGGGAt     >  6:1604789/1‑151 (MQ=255)

                                                                                                                                                  cTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTg                                                                                 <  7:1392125/75‑1 (MQ=17)

                                                                                                                                                  cTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTg                                                                                 >  2:1387749/1‑75 (MQ=255)

                                                                                                                                                  cTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCcaataaccggg                                                             >  2:1149039/1‑90 (MQ=255)

                                                                                                                                                  cTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCACAATCCGGTGCCTTACCGCTTGGCGATACCCcaataaccggg                                                             <  7:1152077/95‑6 (MQ=14)

                                                                                                                                                   ttGAATAACTTGGCTGGGGTACGAGGATTCGAACCTGGGAATGCCGGTATCACAATCCGGTGCCTTACCGCTTGGCGATACCCcaataaccgggc                                                            <  3:1646101/95‑7 (MQ=11)

                                                                                                                                                    tGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGTATCACAAACCGGTGCCTTACCGCTTGGCGATACCCcaataaccgg                                                              <  7:1141494/92‑5 (MQ=14)

                                                                                                                                                    tGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCcaataaccgg                                                              >  2:1138404/1‑88 (MQ=255)

GAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCG  >  NC_000913/696385‑696684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`