Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,708,8050TA25.6% 101.3 / 38.3 156R629R (CGT→CGA) rsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base T (47/40);  new base A (22/8);  total (92/64)
Fisher's exact test for biased strand distribution p-value = 8.51e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 158 total aligned reads displayed.

ACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAAC  >  NC_000913/1708655‑1708953
                                                                                                                                                        |                                                                                                                                                    
aCCAGAACAACAGGCGGATCCGCGCAAAGCTGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑t                                                                                                                                                      <  3:1178447/151‑1 (MQ=255)
     tataatttcttgATCCGCGGAAAGCCGCCTTCTAAGCCTATATTGAAAGTGTTAAAGAACTCTAGGCTCATCAGATATAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGG‑CAGTTGCCGCGGCTATTGCCCg‑cgctc                                                                                                                                                  <  7:1151483/139‑3 (MQ=9)
     aaatccttggtgATCCGCGAAAATCTGCCGTCGTAGCCGCTATTTCCCGGGCAACAGCTCGCAATCTGGAACATCAACAGGATAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAACCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCaa                                                                                                                                                 <  8:803270/140‑1 (MQ=11)
        cccaGGTGGATCCTCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGc                                                                                                                                              <  2:1366051/149‑1 (MQ=14)
            ggccGATCTTCGCATACCCGCCGGTGAAGCGTCTATTGACCGGGACAAATGTCGCAAGCTGGAAGACCATCAGGCTAATGCGGAACCAGAAAAACAGGGCGATCCCCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGc                                                                                                                                          <  4:769848/148‑1 (MQ=2)
             gacGATCCTCGCAAAGCCGCCGTCGACGCAGCTATTCCCCGGGCAAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAACCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCa                                                                                                                                         <  4:876525/149‑1 (MQ=14)
                gttcctggaaatactgccgTTGAAGAAGCTATTTCAGGTGCAAAATCTCGCAAGCTGGAACATCAACAGGCTAATTAGGAACCAGAAGAAGTTGTTGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGc                                                                                                                                      <  6:380398/136‑1 (MQ=2)
                   cctcgtaaaGCAGCCGTCGAAGCCGCTATCGCCCGTGCCACCGAGCGCAAGCTGGTAAACCAACAGGCTAATGCCGAACCAGAACAACAGGGCGATCCGCGCAAACCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTg                                                                                                                                    <  2:1367521/144‑1 (MQ=11)
                        cAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTGGATCCGCGCAAAGCGG‑CCGTCGCCACAGCGAATGCCCG‑CCCGAAAGCACTCAAgacccaaccg                                                                                                                              >  3:67968/1‑142 (MQ=11)
                          aaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCa                                                                                                                            <  3:272269/151‑1 (MQ=255)
                            gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGTAAGAGAGGAAGAGCTCGCTCCTCGCCACCAGT‑CCGTCGCGAGCGCGTTTGCCCG‑GGCCAAAGCACGCAAGCTGGAACAGCAAc                                                                                                                          >  2:503370/1‑151 (MQ=9)
                               gccgTCGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACATCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAgg                                                                                                                       <  4:930606/151‑1 (MQ=255)
                                  gtagaagaagCTATAGCCCGTGCCAAATCTCGCAAGCTGGACCAGCAACAGGATAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTa                                                                                                                    <  7:565777/142‑1 (MQ=11)
                                  gTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGCTCGAGCCCACCAGACACC‑ACGGCACTGCCTCGCGTGCCGG‑TGCGAAAGCCCGCAAGCGGGAACAGAAAAAGGCt                                                                                                                     >  1:778289/1‑150 (MQ=2)
                                   tCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACACCAACAGGCTAATGCGGAGCCAGAAGAACAGCTCGATCCGCGCAAAGCGG‑CCGTCGAAGCCGCTATTGAACG‑AGCCAAAGCACGCAAGCGGGagcgccgacgcgcgtc                                                                                                                   >  4:1290593/1‑136 (MQ=11)
                                    ggtatccGCTATGGCGCGAGCCAACGCGCGCCAGCTTGAGCACCAACAGGAAACTCCGGAACCAGAACAAGTGGCCGATCCCCGCAAACCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt                                                                                                                  <  1:137512/146‑1 (MQ=2)
                                    ccaaGACGCTATTCCCGGGGCCAACCCGCGCAAGCAGGAACAGCAACAGCCAAATGCGGACCCAGAACAACAGGTCGATCCGCGCAAAGCGG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt                                                                                                                  <  3:1626007/149‑1 (MQ=11)
                                    cGAAGCCGGACTGGCGCGAGCGAACGCGCGCCAGCTGGACCACCACCAGGCTAATCCGGACCCAGCACAACAGGTCGATCCGCGCAAACCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt                                                                                                                  <  1:129619/151‑1 (MQ=11)
                                    cGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACATCATCAGAATAAAGACGACCCAGAAAAACATCTAGATCCAAGAAAAGCAG‑CCGTCGCACCCCCTATTACAAA‑AACAAAAGCACCCAAGCAGGAagaggatcggaggagg                                                                                                                  >  4:267505/1‑139 (MQ=2)
                                      aaGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGAAGAACAGGTAGATCCGCGCAAAGCGG‑CCGTCGAAGCCGCTATTGCACG‑GGCCAAAGCCCGCACGCTGGATCGGCAGCGGGcgcgtgg                                                                                                                >  3:300071/1‑145 (MQ=14)
                                          cGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGTAACATCGGAAGAGCTCGCTTCTC‑AAAACCAGTCCGTCGGCACCGGTATTGCCCG‑CGCCAAAGCACGCAAAATCAAACAGCAACCGGcgcctgggggg                                                                                                            >  2:959249/1‑141 (MQ=9)
                                          agcacttcccccgcccAAAGCGCGCAAGCTGGAACAGCAACAGCCTACTGCGGACCCAGAACACCCGGGCGATCCGCGCAAACCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg                                                                                                            <  2:341333/137‑1 (MQ=11)
                                            cTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCGGCTATTGCCCG‑AGCGCAGGCCCGCAACCGCGACCAGCACCAGGCTAATGCCGAGcc                                                                                                          >  1:151324/1‑151 (MQ=14)
                                                 gCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGG‑CAGGCGAGGAAGCTAATGCCAG‑TGCAAACGAGAGCCACCTGAGACAGCCCCAGGCTAATGCCGGGCCAGaac                                                                                                     >  1:806656/1‑151 (MQ=2)
                                                   ccgggacaacactcgcAACCAGGAACAACAACAGCATACTCACGAAGCAGAACAACATGGCGATCCTCGCAAAGCCG‑CCGTCGAAGCAGCTATTGCCCG‑GGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaacaa                                                                                                   <  5:787677/138‑1 (MQ=2)
                                                   ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGATCCAGAAGAACAGGTAGATCCGCGCAAAGCAG‑CCGTCGAAGCGGCTATTGCACG‑AGCCaa                                                                                                                                                 >  8:126667/1‑105 (MQ=11)
                                                      ccccactgcgcgcATGCTTGAACAGCAACAGTCAAATGCGGAAGCAGAAGAACAGGGCGATCCTCGGAAACCGG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaacaac                                                                                                  <  5:626220/142‑1 (MQ=14)
                                                       gCCAAAGCGCGCAAGCTGGAACAGCAACATCCTATTAGTGAACCCCCTTAACAGGTCGACCCTGGCAAACCCG‑CCGTCGAAGCAGCTATTGCCCG‑TGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg                                                                                                <  3:342886/150‑1 (MQ=11)
                                                           aacgcgggaatcTGGAAGAGCTTCAGGATACTTCGGAACCAGAATAAGTTGGCGATCCTCGGAAAGCTG‑CCGTTGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGa                                                                                           <  8:1633446/140‑1 (MQ=14)
                                                            aGCGCGCAAGCGTGAAGAGCAAGATGCTAATGCGGAACCAGAACAAGATGGCGATCCGCGGAAACCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGAt                                                                                          <  2:1125028/151‑1 (MQ=11)
                                                               gcggAACCTGGAACAGCAACAGGATAATGCGGACCCAGAACAACAGGGCGATCCTCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcg                                                                                       <  5:1639246/151‑1 (MQ=11)
                                                                  cAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CCGTCGCAGCCGCTATTGCCCG‑CGCCAAGGCACGCAAGCGGGAACAGCACCAGGCTTATGCCGAGCCAGAACTACAGGTCGGTACgcgc                                                                                    >  2:419541/1‑151 (MQ=14)
                                                                  cAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCACAACGCAA‑CCGACTCAGCCGCTAAAACACT‑TGCCAAAGATCGCAAGATGTAACAGCAACCCGATAAATAAAAAAAAGAACAACAGGTGGATCcgcgg                                                                                    >  4:1269389/1‑150 (MQ=2)
                                                                    aGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAGCGG‑CAGTGGAAGCGGCTATTGACAT‑CGCAACAGCACGCGAGGTCGCTCAGCACCAGCCTAATCAGGTGCCAGAAGAACAGGTGGATCcgcgaa                                                                                   >  5:401052/1‑148 (MQ=2)
                                                                        gcaaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGATCATCGGAAGGCCG‑ACGTCGAAGGAGCTATTGACCC‑TGGATAAGGACGGAACCGGGCTCGCCGAAAGGATAATGACGATCCAGTAGACCAGGTGGATGcgcgggagggg                                                                              >  7:1179168/3‑144 (MQ=2)
                                                                          aaCAGCAACAGGCTAATGCGGAACCAGAAGAGCAGGTCGATCCTCGCAAATCCG‑CAGTCGAAGCAGCTATTGCCCG‑AGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTGCCAGATCGGCAGGTGGCTCCGCGGaactccgg                                                                            >  5:271452/1‑145 (MQ=11)
                                                                           aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAGCGG‑CCGTGGACGCGGCTATTGCCCG‑AGCCAAGGCCCGCAAGCGCGCCCAGCAGCAGGCTAATGCCGAGCCAGAAAAACTCGTCGATAAGCGGAGAgccccc                                                                           >  5:111179/1‑151 (MQ=2)
                                                                             aGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGG‑CAGTCGAACCCTCTAAAGCCCG‑CGCGAAAGCACTCAAGAGCCACCCGACACAGGCTAATGCCGAGCCAGAAGAACAGGTAGATCCGCGCAAAGcggccgg                                                                         >  5:920250/1‑150 (MQ=2)
                                                                              gCAACAGGCTAATGCGGAACCAGAAGCTCCGGTGGGTCCGGTCTAAAGAG‑GTGTCGTAGCCGGTTCTGCCCG‑TGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTc                                                                        <  5:730251/151‑1 (MQ=11)
                                                                              acttcaggatacttaggAAGCAGAATAAGTTGTTGATCCTCGTAAAGCTG‑CCGTCGAAGCAGCTATTGCCCG‑GGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTc                                                                        <  4:120242/136‑1 (MQ=11)
                                                                                    gcatacttccgacccAGAAGACCAGGTGGATCCTCGAAAAGCAG‑CCGTCGAAGCCGCTATTGCCCG‑GGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc                                                                  <  1:795531/138‑1 (MQ=14)
                                                                                     gCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAGAGCAG‑CCGTCGAAGCGGCTATTGCACG‑GGACAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTGGAGCGGGGCAGCGCCGCCGTCGGAGcgg                                                                 >  3:1137943/1‑149 (MQ=11)
                                                                                     gCTAAGGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAGAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCg                                                                 <  5:365177/151‑1 (MQ=255)
                                                                                         aTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CAGTAGAAGCCGCTATTGCCCG‑CGCCAACGCCCCAAACCGCGAACAGCACCAGGGTATTGACGAGCCAGAAATCCAGGTCGCACAGCGAAAAGCCGCAGTTCCAGCCTCTAt                                                             >  1:510115/1‑151 (MQ=2)
                                                                                         aTGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCG‑CAGTAGAAGCCGCTATTGCCCG‑AGCAAAAGCAAAAAAACACGAACAGCAGCACGCAAAAGCGGAGACTAAAGAAAAGGTGGATCCGAGCAAATAGGACGTGGAAGCCGCTAt                                                             >  4:202886/1‑151 (MQ=2)
                                                                                           gaggAAGCAGAATCAGATGTAGATCCTCGCAAATCTG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAtt                                                            <  4:935324/148‑1 (MQ=11)
                                                                                             ggAACCAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCGGCTATTGcc                                                         >  5:1446254/1‑151 (MQ=255)
                                                                                              gAACCAGAAGAACAGGTCGATCCGCGCAAAGCAG‑CCGTAGAACCCGATATAGACCG‑TGACAAAAAAAGAAAGCGGGAAAAGCTACAGGCTAATGCGGAGCCAGAACAAAAGATAGATCCGCGCAAAGCGGCCGTCgcgggggcgaggggcg                                                        >  7:547276/1‑136 (MQ=2)
                                                                                                acccgccccccAGCTCGATCCCCGCAAAACAG‑CCTTTTAAGCAGCTATCGCCCG‑CGCCAAAGATCGAAAGCTGGAACACCAACAGTCTAATCCCGAACCAGAACACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa                                                      <  8:426462/141‑1 (MQ=11)
                                                                                                 ccagaacccgttggcGATCCACGCAAAACTG‑CCGTAGAAGCCGCTATCGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg                                                     <  1:236423/137‑1 (MQ=11)
                                                                                                 ccAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CAGTCGACGCCGCTATTGCCCG‑CGCCAAAGCACGCAAGCTCGAACAGCAACAGGCTACTCCCGACCCAGAAGAGCAGGTTGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCgcg                                                     >  2:243276/1‑149 (MQ=11)
                                                                                                   agaagaACAGGTCGATCCGCGCAAAGCCG‑CAGTCGCAGCCGCTATTGCCCG‑AGCGAAAGCACGCAAGCACGAACAGCAACAGGCTAATGACGAGCCAGAACAACAGGTCCATCCGCGAAAAGCCGCAGTTAACGACGCTATTGCCCgctct                                                   >  6:114835/1‑147 (MQ=14)
                                                                                                    gcacaagatgttgATCCGCGAAAACCGG‑CCGTAGAAGCAGCTATTGCCCG‑GGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATCCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCa                                                  <  2:1291951/139‑1 (MQ=11)
                                                                                                     aagaaCAGGTCGATCCGCGCAAAGCCG‑ACCTCGAAGCCGCTATTGCCCG‑TGCCAAAGCCAGCAACCTGGACCAGCACCCGGCTAATGCCGTACCAGAACAACAAGTCGATCCGCGCAAAGCGGCGGTCGCAGgcgcgagggggcgcgcc                                                   >  7:419554/1‑136 (MQ=2)
                                                                                                     aaaccgaggcggATCCGCGAAAACCGG‑CGGTCGCAGCAGCTTTGGCGGG‑AGCCAACGCCCGCAAGCTGGAACACCATCAGGATAATTCCGACCCAGAACAAGAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaa                                                 <  3:1505647/140‑1 (MQ=2)
                                                                                                       gcaccggacgctCCGCCCAACCCCC‑CCGTCCACGCCGCATCTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAg                                               <  1:332302/140‑1 (MQ=14)
                                                                                                        acgatggggATCCCCGGAAAGCAG‑CCGTCGAAGCTGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACACCAACAGGCTAATGCCGAGGCAGAACAAGAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc                                              <  5:156976/143‑1 (MQ=14)
                                                                                                        aagaGGTCGATCCCCGCAAACCCG‑CCGTAGAAGCCGCTATGGCCCG‑AGCCAACGCGCGCAAGCTTGAACAGCAACAGGATAATGCCGACCCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc                                              <  5:177209/148‑1 (MQ=11)
                                                                                                        aaCAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACATCCTAATAGCGACCAAGAAGAAAAGGTAGATCCTCGAAAAGAAGAAGTCGAAGCGGCTATTgacagaaaaaaaa                                               >  4:577021/1‑138 (MQ=2)
                                                                                                        aaCAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTTGATCCGCGCAAAGCGGCCGTCGCCGCGGCTATTGCCCGAGcgcacgc                                              >  5:260740/1‑145 (MQ=14)
                                                                                                          cAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑GGCCAAAGCACGCGAGCTGGAACAGCCACAGGATAATGCCGAGCCGGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgggg                                            >  1:468489/1‑148 (MQ=14)
                                                                                                           cggTCGATCCGGGGAAACCCG‑CCGTGGAAGCCGCTATTGCCCG‑GGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGACCCAGAACAAGAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgcg                                           <  1:1036280/150‑1 (MQ=14)
                                                                                                           aGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCCAGCAAGCAGGAACAGCAACAGGATAATGCCGACCCAGAAGAACAAATAGATCATCCCAAAGCGGCAGTGGAAGCGGCTATAGCCATCGCTAAAgcgc                                            >  6:1384078/1‑150 (MQ=2)
                                                                                                              tCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑GGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTAGATCCGCGCAAAGCCGCCGTAGCAGCGGCTATTGCCCgcgcgcaggcgagca                                         >  1:722824/1‑139 (MQ=11)
                                                                                                               ccccccGCCCCAACCCG‑CCGTCGAAGCCGCTATTGTCTT‑TTCAAAAGCCCGCTAGCTGGAAGAGCAACAGTCTAATGCCGACCCATAACAACATCTCGTTCCGTGCTAAGTCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaaa                                       <  4:511406/147‑1 (MQ=9)
                                                                                                                 aTCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGAAGCGGCTATTGCCCGCGCGAACgccagaaaagc                                     >  1:1513984/1‑142 (MQ=11)
                                                                                                                 aTCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCCGTAGACGCCGCTATTGCACGCGCGAAAGCGCGCAAAcc                                     >  6:1667405/1‑150 (MQ=11)
                                                                                                                 aTCCCCGCAAACCCG‑CCCTCGACCCAGCGA‑TGCCCGCAGCCATAGCCCGCACCCTGGAACACCAACAGGATAATCCCGACCCAGCACACCAGGCGGATCCCCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACg                                     <  2:365858/151‑1 (MQ=255)
                                                                                                                  cccGCCCACACCCG‑CCGTCCCACCCGCGCTCGCCCG‑AGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACgg                                    <  5:1229377/150‑1 (MQ=11)
                                                                                                                    cgcgCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTGGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGGCCCAGCGGGCaacctggg                                  >  5:921230/1‑145 (MQ=1)
                                                                                                                    cgcgCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGAAGCGGCTATTGCACGAGCAAAAgcaaaaaaacacg                                   >  6:1078739/1‑139 (MQ=11)
                                                                                                                       gcAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGACGCGGCTATTGCCCGCGCCAAAgccagaaaacccgcac                                >  6:609054/1‑136 (MQ=14)
                                                                                                                       gcAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑GGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa                               <  1:482165/151‑1 (MQ=255)
                                                                                                                        cAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGCAGCGGCTATTGCCCGCGCGCACGCCAGCAAACGCGacc                                >  8:1018551/1‑147 (MQ=11)
                                                                                                                         aaaGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGCTCGCTACGCGCAAAGGCGCCGGAGAAGCCCCTATTGCCCGAGCCAAAGCGCGCAAGCTGGAACAGc                             >  2:1236986/1‑151 (MQ=11)
                                                                                                                          aacccg‑ccgTTGAATCCGCTATTGCCCG‑AGCCAAAGCCCGCAAGCGTGATCAGCAACTGGCTAAGTCAGATCCAGTAGAACCCGTGGATCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa                            <  2:1399866/148‑1 (MQ=2)
                                                                                                                           aGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGCGCCCAGGCCCGAAAACGCGACCAGCa                            >  2:879643/1‑150 (MQ=11)
                                                                                                                           aGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAGCCAGCAAACGCGAACAGCa                            >  8:541873/1‑150 (MQ=255)
                                                                                                                            gccg‑ccGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTGGATCCGCGCAAAGCGGCAGTCGACGACGCTATTGCACGCGCCTCAGCTCGCAACCGGCCCCAGCAAc                          >  2:1596732/1‑151 (MQ=11)
                                                                                                                            gccg‑ccGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGCGCTAACGCCCGAAAACCCGAACAGCac                           >  6:376669/1‑149 (MQ=14)
                                                                                                                             ccg‑ccgTCGAAGCCGCTATTGCCCG‑GGCCAAAGCGCGAGATCTGAAGCACCAACAGGATAATAAGGATCAAGAAGAAAAGGTAGATCACCGGAAAGCAGCCGTCGAAGAAGATATTGCACGCGCCAAAGCGCGCGATCGGGagcggggggg                         >  8:1548338/1‑142 (MQ=0)
                                                                                                                             ccg‑ccgCCCAACCCCCCATCGCCCG‑CGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGACCCAGAACAACACGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAAcc                         <  1:200162/151‑1 (MQ=14)
                                                                                                                              gg‑ccgTCGAAGCAGCTATCGCCCG‑CCCCAAAGCCCGCTAGCGGGTACAGCAACAGGCTCATGCCGAGCGCTCACAACAGGGCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg                        <  5:1477150/150‑1 (MQ=11)
                                                                                                                              cg‑ccgTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCCGTAGAAGCCGCTATTGACCGCGCCACAGCCCGCTACCGCGAACAGCACCCg                        >  1:346687/1‑151 (MQ=14)
                                                                                                                               g‑ccgTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTCGCAGCGGCTATTGCCCGCGCGCACGCCCGCAAACGGGCACAGCGAGCgg                       >  5:1060709/1‑151 (MQ=14)
                                                                                                                                    tCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGACGCGGCTATTGCCCGCGCCAAAGCCCCAAAACGCGACCAGCACCAGGc                      >  1:1122083/1‑148 (MQ=11)
                                                                                                                                     cGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGCGCCAACGCGCGCAAACGGGCCCAGCACCCGGCTCAt                  >  2:1220591/1‑151 (MQ=17)
                                                                                                                                     cGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCAGTAGCAGCCGCTATTGCCCGCGCGAACGCAAGCCCGCCGGCTCAGCAACCGGCTa                    >  4:703212/1‑149 (MQ=11)
                                                                                                                                       aaGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAGCCAACAAACGCGAACAGCAGCAGGCTAAtcc                >  4:682414/1‑149 (MQ=14)
                                                                                                                                        aGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGACGCGGCTATTGCCCGCGCGAACGCCCGCAACCGGGAACAGCACCAGGCTACTGCg               >  2:1330070/1‑151 (MQ=14)
                                                                                                                                        aGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGACGCCGCTATTGCCCGCGCCAACGCCCGAAAAGCCGCCCAGCACCAGGCGAATGCg               >  2:625541/1‑151 (MQ=14)
                                                                                                                                          ccGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGACCAGCAACCGGCTAATGCgg              >  5:604175/1‑150 (MQ=255)
                                                                                                                                           cGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGACGCGGCTATTGCCCGCGCGCACGCCCGCAAAGGGGCCCAGCATCAGGCTAAAGCgg              >  3:8316/1‑149 (MQ=14)
                                                                                                                                              tATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCCACGCGCACAAACGCGACCAGCACACGGCtgaagccgacgcc         >  6:1623544/1‑139 (MQ=17)
                                                                                                                                              tATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCAAAAGCCAGCAAACGCGAACAGCAGAAGGATAATGAGGAGcc          >  4:1249857/1‑150 (MQ=14)
                                                                                                                                                  gCCCG‑CGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGCACAACAGGGCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag     <  1:1607766/151‑1 (MQ=11)
                                                                                                                                                   cccG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGCCGCCGCTATTGCCCGCGCGAAAGAGCGCAACCGGCCACCGCAGCACGCCACTGCGGCCCCagaagc    >  3:715232/1‑150 (MQ=14)
                                                                                                                                                   cccG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGACGCCGCTATTGCCCGCGCAAAAGCCAGCAAACGAGAACAGAAACCCGATAATGAgggaacaga       >  4:887389/1‑141 (MQ=14)
                                                                                                                                                    ccG‑TGCCAAAGCACGCAAGCTGGTACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGAGCAAACCGGCACAGCAACCGGCTAATGAGGAGCCagaaga    >  5:807077/1‑150 (MQ=255)
                                                                                                                                                      g‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGACCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTAGAAGCAGCTATTGACCGAGCAAAAGCCACAAAACCCGAACAGCACCAGGATAATAAAGAGCAAGAATAAc  >  4:1433683/1‑150 (MQ=9)
                                                                                                                                                        |                                                                                                                                                    
ACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCG‑CCGTCGAAGCCGCTATTGCCCG‑TGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAAC  >  NC_000913/1708655‑1708953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑