Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,269,9940GT26.3% 209.5 / 21.0 180intergenic (+392/+631)yhaC/garKpentapetide repeats‑related protein/glycerate kinase I
Reads supporting (aligned to +/- strand):  ref base G (21/91);  new base T (2/38);  total (23/157)
Fisher's exact test for biased strand distribution p-value = 4.07e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 185 total aligned reads displayed.

GAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT  >  NC_000913/3269845‑3270140
                                                                                                                                                      |                                                                                                                                                    
gAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTg                                                                                                                                                      <  2:968880/150‑1 (MQ=255)
 aatccgttattatcGGTTTTTTACGTATTTCTGGTTTAACTGTCTTATATTCTGATTTCTTTTGGGTATAGTGTCGTGG‑ACAGTTATTCATCTTTCTGCCGCTACAAAAGGATAAACCCGCGGAAGGGGGTTTTTACGTAAATCAGGTGa                                                                                                                                                     <  6:1688803/137‑1 (MQ=2)
 aaaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa                                                                                                                                                    <  6:1614234/151‑1 (MQ=255)
  aaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaaa                                                                                                                                                   <  5:349129/151‑1 (MQ=255)
  aaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaaa                                                                                                                                                   <  4:1684888/151‑1 (MQ=255)
    cccGCCGGAAAGGTTTATTACGTACATCACGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACt                                                                                                                                                 <  5:710470/151‑1 (MQ=255)
     ccgccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTg                                                                                                                                                <  7:767642/151‑1 (MQ=255)
      cgccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑CCCGTGATTGATCTTTCTGCCCCGCCAAAAAAAAAAACCCCCCGCAGCGGGGTTTTTCCTAAATCAGGGGatccgg                                                                                                                                                >  1:1461335/1‑145 (MQ=14)
        ccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc                                                                                                                                             <  7:1042990/151‑1 (MQ=255)
        ccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc                                                                                                                                             <  8:1606448/151‑1 (MQ=255)
         cgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCg                                                                                                                                            <  4:465692/151‑1 (MQ=255)
           gAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGAt                                                                                                                                          <  4:885943/151‑1 (MQ=255)
           gAACGGTTTATTACGTACATCAGGTAAAACTGACAGATAAGCCCCTTTCTATTGGGTATAGTGTCGAGC‑AAAGTCATTCATCTTTAGGCCCCTCCAAAACAAAAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTGaaaatcggt                                                                                                                                             >  1:1687708/1‑142 (MQ=255)
            aaCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCGTGG‑ACAGTCAATCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATa                                                                                                                                         <  4:1006873/151‑1 (MQ=255)
            aaCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATa                                                                                                                                         <  7:1099332/151‑1 (MQ=255)
             aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAcatacgaatac                                                                                                                                        >  1:1086712/1‑141 (MQ=255)
             aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATaa                                                                                                                                        <  6:328893/151‑1 (MQ=255)
             aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATaa                                                                                                                                        <  1:1039772/151‑1 (MQ=255)
               ggTTTATTACGTACATCAGGTAAAACTGAGCGATAAGCCGCTTTCTTTTTGGTATAGTGTCGTGG‑ACAGTCTTTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                                      <  2:802470/151‑1 (MQ=255)
               ggTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                                      <  7:1523188/151‑1 (MQ=255)
               ggTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                                      <  3:428290/151‑1 (MQ=255)
               ggTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                                      <  8:387401/151‑1 (MQ=255)
                gTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGACGTGG‑ACAGTGATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGcc                                                                                                                                     <  6:1421351/151‑1 (MQ=255)
                    attaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctt                                                                                                                                 <  5:1667627/151‑1 (MQ=40)
                      taCTTACATCAATTTAAAATTAGCGATAAGCGGCTTTCTTTTGCCTATAGTCTCGTGG‑AAAGCCTTTCATATTTCTCCCACTCAAAAATCAAAAACCCGCCGAACCGGTTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGcttt                                                                                                                                <  2:510330/150‑1 (MQ=2)
                       aCGTACATCATGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct                                                                                                                              <  8:483834/151‑1 (MQ=255)
                       aCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTTATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct                                                                                                                              <  2:737513/151‑1 (MQ=255)
                        cGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct‑t                                                                                                                            <  6:404281/151‑1 (MQ=40)
                         gttcATCAGGAAATACTGACCGATAAGCCGCATTCTTTATGGTATAGTGTCGTGG‑ACAGTCATTCATCTATCTGCCACTCAAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct‑tt                                                                                                                           <  6:530689/148‑1 (MQ=11)
                          aaCATCAGGCAAAAATTAGCGATAATCCGGTTGCTTTAGTCGGTAGTGTCGTGG‑TCTGGCTTTCCTCTTTCTGGCACTCAAAAAGTACAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGCTAAACTGACCGATAAGCCGCTTTCt‑ttt                                                                                                                          <  8:920971/150‑1 (MQ=9)
                           tgatcacttataaCTGACCGATAAGCCGCTTGCTTTTTGGTTTAGTGTCGTGG‑CAAGTCATTCTTCTTTCTGCCACTCCAAAAGTATAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCt‑ttt                                                                                                                          <  8:620054/139‑1 (MQ=11)
                           aCATCAGTTTAAAATGACCGATAAGGCGGTTTCTTTAGTGTATAGTGTCGGCG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTTAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTg                                                                                                                         <  3:1173694/151‑1 (MQ=11)
                            cctCATGTTAAACTGAGCGATCAGTCGCTTTCTTTTGTGTTTAGTGTCGTGG‑CCAGTCATTCCTCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTgg                                                                                                                        <  4:718114/149‑1 (MQ=11)
                            cATCAGGTAAAACTGACCGATAAGGCGCTTTCTTTTGGGTATAGTGTCGGGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTgg                                                                                                                        <  1:1382150/151‑1 (MQ=255)
                             aTCACGTAAAACTGACCGATAAGCCGCTTTCTTTTGGTTATAGTGTCGTGG‑ACTGTCATTCCTCTTTCTGCCCCTCAAAAAGTAAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTggg                                                                                                                       <  7:622810/151‑1 (MQ=11)
                              ttatttAAAAGTGAACGATATCGCTCTTTCTTTTGTGGATACTTTCTTGG‑ATAGTCTTTGATCTTTCTTTCTCTCAAAAATCATAAACCCGCCGTATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTggg                                                                                                                       <  7:1636105/145‑1 (MQ=2)
                               catgtatcaCTTACCGATAAGCCGCTTTCATTTGCCTCGCGTGTCGGGG‑AAAGGCTTTCCTCTATATCCCCCTCAAAAATGAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGt                                                                                                                      <  3:1090867/142‑1 (MQ=2)
                                    attaCTTACCGATAAGTAGTTTTCTTTTGTCTATAGTGTCGTGG‑ACAGTCTTACTTCTTTATGCCACTCAAAAATTACAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAgtg                                                                                                                <  7:62240/148‑1 (MQ=11)
                                    aagaattagcGATAAGAGGCTTTCTTTTTGCTTTATTGTCGAGG‑AAAGTCTCTCATCTTTATGCCACTCAAAAAGTAAAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAgtg                                                                                                                <  8:705126/142‑1 (MQ=11)
                                    aaaaATGACCGTTCAGGCGCAGTCTTTTTCCGATAGTGACGAGG‑ACAGGCCAACATCTAACTGCCCCTCAAAAATTAAAAACCCGCCGAAGCGGGTTATTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAgtg                                                                                                                <  2:1042307/151‑1 (MQ=2)
                                       aCTGACCGATAATCCGCTGTCTTTTGCCGATCTTCTCGGCG‑ACAGGCCTTCCTCTTTCTGCCCCTCCAAAAGCACAAACCCGCCGCACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCg                                                                                                             <  1:670094/151‑1 (MQ=11)
                                        atGACCGATAAGACGCTTTCTTTATCCTACAGTCTCGCCG‑ACAGCCAAACCACTAACTCCCACTCAAAAAGGAAAAACCCGCCGCACCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGt                                                                                                            <  2:1589762/150‑1 (MQ=2)
                                          gtgcGATAAGCCGCTGTCTTTTGGGTATCGTGTCGGGG‑AATGTCTTTCATCTTTCTCCCCCTCCACAAGTTCAAACCCGCCGCAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTg                                                                                                           <  3:817651/147‑1 (MQ=11)
                                           cgcGATAAGTCGCTTGCTGTTGCCTCTTGTGTCGTCG‑CCAGACTTTCCTCTTTCTCCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGa                                                                                                         <  8:1377174/149‑1 (MQ=11)
                                           agcgatctggcgatttctttTTGGTATTGTGTCGTGG‑ACAGTGATTCATCTTTATGGCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGa                                                                                                         <  3:27766/138‑1 (MQ=11)
                                            ccGATAAGCCGCTTTCATTTTGGTATAGTGTCGGGG‑ACAGTCATTCATCTTTCTGCCACTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGAc                                                                                                        <  5:1294497/151‑1 (MQ=255)
                                             cGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑CCAGTCATTCATCTTTGTGCCCCAACAAAACCAAAAACACGCCCAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAACCCGGGTTCT‑TTTGTGTAAAgtctagtatca                                                                                                        >  1:740246/1‑141 (MQ=11)
                                              gttatgCCGCTTTCTTTTTTGTTTATTGTCGTGGAATGGGTATTTA‑CTTTCTGGCCCTCAAAAATTTTAAACCCGCCGTATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑g                                                                                                     <  4:980893/146‑1 (MQ=2)
                                              gATAAGACGCTTTCTTTTGTGTATAGTGTCGGCG‑ACAGTCATTCATATTTCTGCCACTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑g                                                                                                     <  3:488972/151‑1 (MQ=11)
                                                  agcagcTTTCTTGTGCCTATAGTGTCGCGG‑ACAGGCAATCATCTTTCTGCCCCTCCAAAAGGAAAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑Gtcat                                                                                                 <  2:766814/151‑1 (MQ=11)
                                                   gCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGGGATTCATCTTTCTGGCCCTACAAAAGTAAAAAACCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTTTGGTGTCggggcccgggggc                                                                                                 >  2:1034005/1‑142 (MQ=11)
                                                     cGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATATTTCACACCCAACAAAAACAAAAAAACCCCGAAGAGCGGTTTTAAGTAAAACACGTGAAACTTAACGCCAACCCGCGGTGTGTTTGGGT‑TAGTGTTGTgggagccaaaca                                                                                                >  6:1185775/1‑140 (MQ=0)
                                                        tttctttTGGGTATAGTGTCGTGG‑ACAGTCAATAAACGTTCAGCCACGACAAAAGAAAAAAACAGCCGAAAAGGGTTTATAACTAAAACAGGAGAAACATAAAAAAAAAACGCTTTGT‑TTTGGGTATAGGGTCGTgggcggggatggtggg                                                                                            >  6:736026/1‑137 (MQ=2)
                                                         ttctttTTCGGATCGTGTCGCGG‑ACAGTCATTTATATTTCGCCCACTCAAAAAGTAAAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCt                                                                                           <  5:253285/150‑1 (MQ=11)
                                                         ttctttTGGGGCTAGTCTCGTGG‑ACACTCATTCATCTTTCTGCCACTCCAAAAGGACAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCt                                                                                           <  1:948750/150‑1 (MQ=11)
                                                         ttcttgtgatttttgtgtCGTGG‑ACAGTGTGTCTTATTTCTGGCACTCCAAAAGTTGAAACCCGCCGCATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCt                                                                                           <  6:1346123/136‑1 (MQ=11)
                                                         ttctgttgcctcctgtgtCGTGG‑ACAGCGTTTCTACTTTCTGCCCCTCCAAAAGTACAAACCCGCCGAAGCGGGTTATTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCt                                                                                           <  3:816195/136‑1 (MQ=11)
                                                          tctttagcatatcGTGTCGAGG‑ACTGTGATTAATCTTTCTGGCACTCAACAATTATAAACCCGCCGTATCGGTTTTTTACGTATATCAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCtt                                                                                          <  8:339306/141‑1 (MQ=11)
                                                                           cgcgg‑ACAGGCACACCTCTTTCTCCCACTCCAAAAGAAAAAACCCGCCGAACCGGGTTTTTACGTACAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCa                                                                        <  2:601695/148‑1 (MQ=11)
                                                                                 caagtgtctttacTTTATGCCACTCAACAATAACAAACCCGCCGAATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTGGTTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAc                                                                   <  6:860321/139‑1 (MQ=11)
                                                                                 acagcgtctcctCTTTCTGCCACTCAAAAAGTTTAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAc                                                                   <  7:1271771/140‑1 (MQ=11)
                                                                                    gTCATTCTTCTTTCTCGCACTCAAAAAGTACAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccg                                                                <  1:356259/151‑1 (MQ=11)
                                                                                    gTCATGCAGCTATCAGCCCCTCCAAAAGTAAAATCCCGCCGAAGCGGGTTTTTACGTAAACCATCTGACCATTCCCTTTACTCCCCTGTCT‑TTATCTTACCCTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccg                                                                <  5:969026/151‑1 (MQ=2)
                                                                                      gtctacaatatctcCCCCTCCAAAATTTTAAACCCGCCGTACCGTGTTATTACGTAATACAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCTAAAACccgcc                                                              <  7:484393/141‑1 (MQ=11)
                                                                                        atttaatatCTGGCACTCAAAAATTATAAACCCGCCGAATCGGTTTATTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgccg                                                             <  8:180016/142‑1 (MQ=11)
                                                                                        aaactatatatGCCACTCAAAAAGGTCAAACCCGCCGCAGCGGTTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGa                                                            <  3:23740/141‑1 (MQ=11)
                                                                                         acatCTAACTCCCACTCCAAAAGTACAAACCCGCCGAACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGaa                                                           <  2:1238151/150‑1 (MQ=11)
                                                                                                  gcgcacTCCAAAAGAACAAACCCGCCGAAGCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtttt                                                  <  3:921835/146‑1 (MQ=11)
                                                                                                   ggcccTCAAAAAGTACATACCCGCCGGAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAATAGCAAAAACCCGCCGAAGCGGGtttt                                                  <  2:1370509/148‑1 (MQ=11)
                                                                                                   gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAGGCTGAGCGATAGGCCGCTGTCT‑TTTGGGTAGAGTGTCGTGGGCA‑GTCCTTCATGTTTCTGGCCCTCCAAAAGCAAAAACccgcgggcggggggggtt                                                 >  2:133030/1‑137 (MQ=11)
                                                                                                    gcccTCAAAAAGATCAAACCCGCCGGATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa                                                <  6:1249853/150‑1 (MQ=11)
                                                                                                    ccccTCCACAAGCACAAACCCGCCGCACCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAACCCGCTTTCT‑TTTGGGTATAGTGGCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAACCAAAAACCCGCCGAAGCGGGTTTTTa                                                <  2:320499/151‑1 (MQ=11)
                                                                                                    ccactcaacaatgtcaaaCCCGCCGTATCGGGTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa                                                <  4:1534108/136‑1 (MQ=11)
                                                                                                    ccacTCCAAAATCAAAAACCCGCCGTACCGGGTTTTTACGTACAACAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa                                                <  1:504716/148‑1 (MQ=11)
                                                                                                     cccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGAACTAAAAGCAGATTTCT‑TTTGGTTATACAGTAGTTGAAA‑ATCAATAATCTATAAGAAAATAAAAAAAAAAAAAACACCCGAAGCGGGTTTTTa                                                >  6:108042/1‑150 (MQ=2)
                                                                                                     cccTCCAAAAGCACAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTCCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc                                               <  5:794223/151‑1 (MQ=255)
                                                                                                         ccAAAAGCAGAAACCCGCCGCAGCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGt                                             <  5:580067/149‑1 (MQ=255)
                                                                                                         caacaagcagaaaCCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTa                                            <  1:1651440/140‑1 (MQ=255)
                                                                                                           aaaaTTACAAACCCGCCGTACCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAc                                         <  4:1600072/151‑1 (MQ=11)
                                                                                                           aaaaGCACAAACCCGCAGAAGCGGGTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAc                                         <  8:790070/151‑1 (MQ=2)
                                                                                                             aagcacaaaCCCGCCGCACCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa                                       <  3:1325242/145‑1 (MQ=11)
                                                                                                             aagcacaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa                                       <  1:1263783/145‑1 (MQ=18)
                                                                                                              aggaaaaaCCCGCCGAACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg                                      <  5:1472341/148‑1 (MQ=25)
                                                                                                              agcacaaaCCCGCCGCACCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg                                      <  2:225688/146‑1 (MQ=255)
                                                                                                                    aaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGCCA‑GGGCTTGATCTTTGTGGCCCTCCAAAAGCAAAAACCCGCCGCAGCGGGGTTTTTCGTAAACCCggggcac                                >  5:1224919/1‑146 (MQ=11)
                                                                                                                     aCCCGCCGAAGCGGTTTATTACGTACAACAGGTTATACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAAc                               <  6:358746/151‑1 (MQ=255)
                                                                                                                     aCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAAc                               <  3:52924/151‑1 (MQ=35)
                                                                                                                     aCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAAc                               <  1:1566353/151‑1 (MQ=25)
                                                                                                                        cgccgGAGCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa                            <  3:17119/151‑1 (MQ=255)
                                                                                                                           cgcatcGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCg                         <  2:820753/146‑1 (MQ=25)
                                                                                                                           cgcaGCGGGTTATTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCg                         <  5:1326952/148‑1 (MQ=25)
                                                                                                                            ggatcGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGa                        <  5:898630/147‑1 (MQ=25)
                                                                                                                              agttggTTTTTTAGTAAATTAGGTCAAACTGACGTATAAGCTTGTTTTT‑TTTGTGTATATTGTCGTTGAAA‑GTGTTTTTTCTTTATGCCCCTAAAAAATCAAAAACCCGCCGAAGCTGTTTTTTACGTAAACCAGGTGAAACTGACCGATa                      <  6:1145066/147‑1 (MQ=255)
                                                                                                                              accGGTTTTTTACGTACATCAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATa                      <  3:1435970/149‑1 (MQ=9)
                                                                                                                                 gggTTTTTACGTACATCAGGTTATAATTACCGATAAGCCGCTTTCT‑TTTGGTTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGc                   <  7:102556/151‑1 (MQ=11)
                                                                                                                                  gttttttACTTAAATAAGGTGTTACTTTCTGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATaa                     <  7:1051167/146‑1 (MQ=11)
                                                                                                                                   tttattACGTACATCATGATAAACTGATAGATAATCAGTTTTCT‑TTTCGTTTTAGTTGATTGGATA‑TTGATTTTTATTTATGGCACTCAAAAATCAAAAACCCGCCGAATCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGca                  <  4:1437810/146‑2 (MQ=255)
                                                                                                                                            tAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGGGTCGTGGACACGGCA‑TCATCTTTGTGCCCCTCCAAAAGCAAAAAAACCCCGAAGCGGGTTTTTACGTAAAGCAGGTGCAACTGCCCGAtgcgcggctggggggg        >  3:303048/1‑136 (MQ=11)
                                                                                                                                              aaaCAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GGCATTCAAATTTTGGCCCCAGCAAAAGCAAAAACCCCCCGCAGCGCGGTTTTACGTCAAGCAGGTGAAACTGACCGATAAGCCGCGTTGTTTTgg      >  2:1365575/1‑151 (MQ=11)
                                                                                                                                                    gTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGAGA‑GTCAATCATAATTGAGCCCCAGCAAAAACAAAAACCCGCCGCAGCGGGTTTTTACGTTAACCACGTGAAACGGAACGGTAAGCCGCTTTGTTTTggggta  >  8:1334750/1‑146 (MQ=11)
                                                                                                                                                      |                                                                                                                                                    
GAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGG‑ACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCT‑TTTGGGTATAGTGTCGTGGACA‑GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT  >  NC_000913/3269845‑3270140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑